Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47478 * 2 1 4 4 N 1.46505 * 109.46862 * 240.00504 * 2 1 3 5 5 C 1.38851 * 120.00056 * 85.00115 * 4 2 1 6 6 C 1.39578 * 119.84331 * 179.97438 * 5 4 2 7 7 C 1.36335 * 120.16021 * 180.02562 * 6 5 4 8 8 C 1.40880 * 119.83920 * 0.02562 * 7 6 5 9 9 C 1.41143 * 120.15448 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99694 * 206.70346 * 9 8 7 11 11 C 1.39861 * 120.00029 * 26.70526 * 9 8 7 12 12 N 1.30902 * 119.99900 * 198.15365 * 11 9 8 13 13 Si 1.86803 * 120.00117 * 18.14548 * 11 9 8 14 14 H 1.48495 * 109.47215 * 264.83027 * 13 11 9 15 15 H 1.48493 * 109.46988 * 24.83287 * 13 11 9 16 16 H 1.48502 * 109.46967 * 144.82591 * 13 11 9 17 17 C 1.40887 * 119.69123 * 0.26866 * 8 7 6 18 18 C 1.36346 * 119.83175 * 359.45155 * 17 8 7 19 19 C 1.52992 * 109.47217 * 120.00560 * 2 1 3 20 20 H 1.09002 * 110.27921 * 59.36168 * 19 2 1 21 21 C 1.54596 * 110.30855 * 297.16884 * 19 2 1 22 22 C 1.54941 * 102.92505 * 219.12727 * 21 19 2 23 23 N 1.48535 * 103.22536 * 37.41168 * 22 21 19 24 24 C 1.47904 * 105.82182 * 320.79704 * 23 22 21 25 25 H 1.09006 * 109.46904 * 59.99705 * 1 2 3 26 26 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47236 * 299.99463 * 1 2 3 28 28 H 0.97000 * 119.99510 * 264.99430 * 4 2 1 29 29 H 1.08001 * 119.91737 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.07943 * 179.97438 * 7 6 5 31 31 H 0.97001 * 119.99733 * 179.97438 * 12 11 9 32 32 H 1.08001 * 120.08605 * 179.69888 * 17 8 7 33 33 H 1.08003 * 119.91471 * 180.27129 * 18 17 8 34 34 H 1.09003 * 110.72406 * 337.48229 * 21 19 2 35 35 H 1.09002 * 110.72526 * 100.76694 * 21 19 2 36 36 H 1.09001 * 110.66305 * 278.98078 * 22 21 19 37 37 H 1.08995 * 110.66919 * 155.84968 * 22 21 19 38 38 H 1.00900 * 111.00082 * 200.28095 * 23 22 21 39 39 H 1.09001 * 109.91628 * 265.97810 * 24 23 22 40 40 H 1.08997 * 110.08360 * 144.77649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1509 0.0022 -2.3923 6 6 2.6169 -0.6588 -3.5299 7 6 2.7501 0.0153 -4.7074 8 6 2.4166 1.3824 -4.7742 9 6 2.5514 2.0866 -5.9899 10 1 2.7226 3.1529 -5.9802 11 6 2.4631 1.4035 -7.2072 12 7 2.9286 1.9522 -8.3008 13 14 1.6813 -0.2918 -7.2724 14 1 2.7397 -1.3290 -7.1770 15 1 0.7350 -0.4444 -6.1383 16 1 0.9476 -0.4495 -8.5538 17 6 1.9527 2.0447 -3.6204 18 6 1.8190 1.3566 -2.4509 19 6 2.0400 -0.7213 1.2491 20 1 1.6747 -1.7481 1.2680 21 6 1.5947 0.0323 2.5233 22 6 2.8355 -0.0809 3.4444 23 7 3.9736 0.0498 2.4989 24 6 3.5794 -0.7009 1.2871 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.8734 -1.7065 -3.4769 30 1 3.1112 -0.4974 -5.5868 31 1 2.8677 1.4782 -9.1450 32 1 1.6998 3.0938 -3.6632 33 1 1.4594 1.8619 -1.5668 34 1 1.3760 1.0761 2.2975 35 1 0.7315 -0.4543 2.9775 36 1 2.8581 -1.0505 3.9419 37 1 2.8474 0.7279 4.1749 38 1 4.8204 -0.3267 2.8980 39 1 3.9630 -1.7198 1.3403 40 1 3.9662 -0.2048 0.3970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400420829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = 1.018681 kcal Electronic energy + Delta-G solvation = -19274.545654 eV Core-core repulsion = 16473.372339 eV Total energy + Delta-G solvation = -2801.173314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50129 -39.41239 -36.88569 -35.11750 -33.03022 -31.64750 -30.70553 -29.60572 -29.21097 -26.07409 -24.05370 -22.89992 -22.38478 -21.91547 -20.76659 -19.18870 -18.18172 -17.53050 -17.28786 -16.61984 -15.96093 -15.53274 -15.14456 -14.84548 -14.62327 -14.29804 -14.20780 -14.02624 -13.87370 -13.56512 -13.32294 -13.06518 -12.78490 -12.56770 -12.48588 -12.42032 -12.06207 -11.93300 -11.82035 -11.72599 -11.38977 -11.32372 -10.97031 -10.42641 -9.54370 -9.43245 -8.77528 -8.28826 -6.15152 0.89447 0.98970 1.28439 1.44560 1.52757 2.18216 2.71694 2.81080 3.38520 3.63359 3.67217 3.79017 3.95681 4.25042 4.35690 4.38337 4.44959 4.47412 4.53086 4.70615 4.72660 4.78884 4.84970 5.00053 5.00595 5.07351 5.08163 5.12847 5.17300 5.26706 5.33675 5.44940 5.57778 5.61456 5.81250 5.89153 6.00470 6.26232 6.43598 6.44330 6.70015 6.91851 7.00710 7.24974 8.33061 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040120 B = 0.004334 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.743314 B = 6459.163721 C = 6514.398464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.059 0.941 4 N -0.742 5.742 5 C 0.129 3.871 6 C -0.157 4.157 7 C -0.205 4.205 8 C 0.026 3.974 9 C -0.489 4.489 10 H 0.047 0.953 11 C 0.040 3.960 12 N -0.870 5.870 13 Si 0.970 3.030 14 H -0.262 1.262 15 H -0.253 1.253 16 H -0.284 1.284 17 C -0.177 4.177 18 C -0.152 4.152 19 C -0.096 4.096 20 H 0.089 0.911 21 C -0.113 4.113 22 C 0.037 3.963 23 N -0.690 5.690 24 C 0.045 3.955 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.396 0.604 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.343 0.657 39 H 0.047 0.953 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -9.676 21.999 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.077 0.923 4 N -0.375 5.375 5 C 0.028 3.972 6 C -0.179 4.179 7 C -0.225 4.225 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.066 0.934 11 C -0.171 4.171 12 N -0.498 5.498 13 Si 0.794 3.206 14 H -0.188 1.188 15 H -0.177 1.177 16 H -0.211 1.211 17 C -0.197 4.197 18 C -0.174 4.174 19 C -0.115 4.115 20 H 0.108 0.892 21 C -0.152 4.152 22 C -0.092 4.092 23 N -0.320 5.320 24 C -0.084 4.084 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.231 0.769 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.159 0.841 39 H 0.066 0.934 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.484 -8.805 21.606 23.590 hybrid contribution 0.221 -1.285 -0.658 1.461 sum -3.262 -10.090 20.948 23.480 Atomic orbital electron populations 1.22264 0.95845 1.02284 1.01789 1.20805 0.93431 0.95940 0.83752 0.92295 1.44055 1.75653 1.11654 1.06168 1.17412 1.01479 0.91433 0.86841 1.20162 1.06267 0.99358 0.92162 1.20647 1.08791 0.95499 0.97556 1.17727 0.93805 0.92567 0.93605 1.19304 1.46169 0.95845 0.90693 0.93443 1.26756 0.92937 1.02831 0.94549 1.69783 1.37359 1.41472 1.01221 0.85451 0.79734 0.77900 0.77466 1.18753 1.17719 1.21114 1.20762 1.05899 0.99205 0.93799 1.20266 1.06348 0.93331 0.97438 1.22209 0.94516 1.00386 0.94412 0.89235 1.22549 0.97947 1.00974 0.93694 1.23104 0.90103 1.00970 0.94995 1.63021 1.06152 1.56743 1.06083 1.22640 0.95266 0.96402 0.94119 0.94285 0.92093 0.90397 0.76907 0.86013 0.88876 0.90200 0.88412 0.86207 0.91156 0.88953 0.92892 0.89552 0.84071 0.93435 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.21 71.98 0.66 -2.81 16 2 C 0.17 3.85 1.50 44.99 0.07 3.92 16 3 H 0.06 1.62 6.44 -2.39 -0.02 1.60 16 4 N -0.74 -20.62 4.64 -318.54 -1.48 -22.09 16 5 C 0.13 4.84 6.65 38.67 0.26 5.10 16 6 C -0.16 -6.48 9.82 22.15 0.22 -6.26 16 7 C -0.21 -10.05 7.06 22.47 0.16 -9.89 16 8 C 0.03 1.40 5.19 -21.27 -0.11 1.29 16 9 C -0.49 -29.19 9.57 23.38 0.22 -28.97 16 10 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 11 C 0.04 2.30 5.42 85.22 0.46 2.76 16 12 N -0.87 -50.93 13.93 21.81 0.30 -50.62 16 13 Si 0.97 45.55 24.42 68.60 1.68 47.23 16 14 H -0.26 -11.59 6.66 99.48 0.66 -10.92 16 15 H -0.25 -12.06 6.76 99.48 0.67 -11.38 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 C -0.18 -8.51 9.74 22.48 0.22 -8.29 16 18 C -0.15 -6.19 8.74 22.15 0.19 -5.99 16 19 C -0.10 -1.67 2.63 -9.92 -0.03 -1.69 16 20 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.11 -1.64 5.60 31.80 0.18 -1.46 16 22 C 0.04 0.52 7.55 86.65 0.65 1.17 16 23 N -0.69 -12.71 7.51 -502.18 -3.77 -16.49 16 24 C 0.05 0.89 6.95 86.45 0.60 1.49 16 25 H 0.04 1.02 7.66 -2.38 -0.02 1.01 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.32 7.26 -2.39 -0.02 1.30 16 28 H 0.40 9.49 8.60 -92.71 -0.80 8.69 16 29 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.09 4.60 4.29 -2.91 -0.01 4.59 16 31 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 32 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.12 4.27 6.04 -2.91 -0.02 4.25 16 34 H 0.07 1.16 7.73 -2.39 -0.02 1.14 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.34 5.22 8.92 -89.69 -0.80 4.42 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 1.54 7.41 -2.39 -0.02 1.52 16 Total: -1.00 -64.95 312.34 -0.14 -65.09 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.63 Total: 26.51 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 3.76 Total: -49.63 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.95 Total: -89.20 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.68 Total: 47.23 kcal Total: -64.95 -0.14 -65.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.109 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds