Wall clock time and date at job start Mon Mar 30 2020 06:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47255 * 2 1 4 4 N 1.46507 * 109.46582 * 119.99524 * 2 1 3 5 5 C 1.38858 * 119.99849 * 274.99823 * 4 2 1 6 6 C 1.39569 * 119.83664 * 180.02562 * 5 4 2 7 7 C 1.36335 * 120.15626 * 179.72500 * 6 5 4 8 8 C 1.40890 * 119.83802 * 0.25652 * 7 6 5 9 9 C 1.41141 * 120.15596 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99962 * 150.12898 * 9 8 7 11 11 C 1.39864 * 120.00104 * 330.13692 * 9 8 7 12 12 N 1.30902 * 120.00385 * 161.71874 * 11 9 8 13 13 Si 1.86807 * 119.99967 * 341.71610 * 11 9 8 14 14 H 1.48499 * 109.47082 * 95.41655 * 13 11 9 15 15 H 1.48500 * 109.47289 * 215.41819 * 13 11 9 16 16 H 1.48504 * 109.46951 * 335.42080 * 13 11 9 17 17 C 1.40883 * 119.68946 * 359.97438 * 8 7 6 18 18 C 1.36339 * 119.83868 * 0.02562 * 17 8 7 19 19 C 1.53003 * 109.47372 * 239.99469 * 2 1 3 20 20 H 1.08996 * 110.28811 * 297.87279 * 19 2 1 21 21 C 1.54259 * 110.31870 * 60.00279 * 19 2 1 22 22 C 1.54379 * 105.05793 * 118.89853 * 21 19 2 23 23 N 1.48557 * 104.60013 * 23.84641 * 22 21 19 24 24 C 1.48562 * 104.22049 * 320.52000 * 23 22 21 25 25 H 1.09004 * 109.46931 * 60.00559 * 1 2 3 26 26 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47334 * 300.00719 * 1 2 3 28 28 H 0.96993 * 119.99938 * 95.00517 * 4 2 1 29 29 H 1.07993 * 119.92397 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.08042 * 180.27899 * 7 6 5 31 31 H 0.96995 * 120.00508 * 179.97438 * 12 11 9 32 32 H 1.08005 * 120.08136 * 179.97438 * 17 8 7 33 33 H 1.07997 * 119.92498 * 180.02562 * 18 17 8 34 34 H 1.09004 * 110.32207 * 237.78747 * 21 19 2 35 35 H 1.08992 * 110.32737 * 359.97438 * 21 19 2 36 36 H 1.09000 * 110.41281 * 142.62612 * 22 21 19 37 37 H 1.08999 * 110.40993 * 264.94875 * 22 21 19 38 38 H 1.00900 * 111.00509 * 200.96465 * 23 22 21 39 39 H 1.08991 * 110.41164 * 280.70216 * 24 23 22 40 40 H 1.09004 * 110.41245 * 158.25597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1508 0.0023 2.3924 6 6 2.6168 -0.6588 3.5298 7 6 2.7548 0.0165 4.7061 8 6 2.4206 1.3835 4.7730 9 6 2.5603 2.0890 5.9875 10 1 2.7817 3.1460 5.9756 11 6 2.4123 1.4192 7.2064 12 7 2.8799 1.9518 8.3069 13 14 1.5473 -0.2355 7.2638 14 1 2.5559 -1.3237 7.2036 15 1 0.7742 -0.3464 8.5269 16 1 0.6240 -0.3518 6.1065 17 6 1.9463 2.0431 3.6220 18 6 1.8133 1.3552 2.4524 19 6 2.0401 -0.7214 -1.2492 20 1 1.7155 -1.7618 -1.2438 21 6 1.5368 -0.0096 -2.5218 22 6 2.8148 0.4437 -3.2598 23 7 3.8749 -0.4757 -2.7722 24 6 3.5798 -0.6381 -1.3252 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8898 28 1 2.2490 -1.6316 1.1528 29 1 2.8732 -1.7065 3.4769 30 1 3.1197 -0.4952 5.5845 31 1 2.7770 1.4875 9.1523 32 1 1.6878 3.0908 3.6662 33 1 1.4502 1.8595 1.5691 34 1 0.9667 -0.7012 -3.1421 35 1 0.9261 0.8534 -2.2566 36 1 2.6883 0.3404 -4.3375 37 1 3.0562 1.4752 -3.0034 38 1 4.7913 -0.0774 -2.9118 39 1 3.9421 0.2234 -0.7644 40 1 4.0293 -1.5560 -0.9463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400420831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:52 Heat of formation + Delta-G solvation = 19.271145 kcal Electronic energy + Delta-G solvation = -19271.377735 eV Core-core repulsion = 16470.995907 eV Total energy + Delta-G solvation = -2800.381828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.37318 -37.97199 -35.51624 -33.30939 -31.64944 -29.89046 -29.48537 -28.44370 -28.13678 -24.34359 -22.68898 -21.73698 -21.29775 -20.28202 -19.60593 -17.31430 -16.84012 -16.43374 -15.89641 -15.11621 -14.62832 -14.13964 -13.90721 -13.50668 -13.16475 -13.06916 -12.69385 -12.47585 -12.37486 -12.29977 -12.25993 -11.88253 -11.48992 -11.43405 -11.20061 -11.06005 -10.76386 -10.67173 -10.39582 -10.15304 -9.92084 -9.49479 -9.19796 -8.78809 -8.69648 -7.76888 -6.76061 -6.59348 -4.16063 2.70034 2.81441 3.20074 3.30166 3.41762 4.03175 4.11036 4.13305 4.50480 4.64366 4.71757 4.85244 5.02301 5.29376 5.36734 5.45039 5.53799 5.57143 5.59516 5.72770 5.80844 5.81991 5.95469 5.96658 6.02114 6.06178 6.20888 6.40613 6.55093 6.56355 6.69797 6.91481 7.09094 7.14474 7.32679 7.40206 7.61415 7.94491 8.07234 8.33112 8.49801 8.58433 8.85366 8.99648 10.28480 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039972 B = 0.004325 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.318035 B = 6472.931929 C = 6525.629515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.166 3.834 3 H 0.071 0.929 4 N -0.754 5.754 5 C 0.096 3.904 6 C -0.144 4.144 7 C -0.196 4.196 8 C 0.059 3.941 9 C -0.456 4.456 10 H 0.085 0.915 11 C 0.083 3.917 12 N -0.825 5.825 13 Si 0.908 3.092 14 H -0.274 1.274 15 H -0.294 1.294 16 H -0.246 1.246 17 C -0.170 4.170 18 C -0.149 4.149 19 C -0.097 4.097 20 H 0.079 0.921 21 C -0.118 4.118 22 C 0.033 3.967 23 N -0.671 5.671 24 C 0.044 3.956 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.385 0.615 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.280 0.720 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.335 0.665 39 H 0.047 0.953 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -4.861 -17.773 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 H 0.088 0.912 4 N -0.389 5.389 5 C -0.001 4.001 6 C -0.166 4.166 7 C -0.216 4.216 8 C 0.056 3.944 9 C -0.486 4.486 10 H 0.103 0.897 11 C -0.133 4.133 12 N -0.451 5.451 13 Si 0.735 3.265 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.170 1.170 17 C -0.190 4.190 18 C -0.171 4.171 19 C -0.116 4.116 20 H 0.097 0.903 21 C -0.157 4.157 22 C -0.096 4.096 23 N -0.299 5.299 24 C -0.086 4.086 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.218 0.782 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.150 0.850 39 H 0.066 0.934 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.428 -5.298 -17.831 18.759 hybrid contribution 0.041 -0.193 0.661 0.689 sum -2.387 -5.490 -17.170 18.184 Atomic orbital electron populations 1.22357 0.96883 1.01865 1.01726 1.20686 0.92949 0.96310 0.84122 0.91152 1.43939 1.76921 1.11169 1.06839 1.17282 1.05337 0.91754 0.85772 1.19901 1.06039 0.97837 0.92815 1.20619 1.08397 0.96109 0.96454 1.17635 0.91670 0.91461 0.93682 1.19273 1.42654 0.98019 0.88672 0.89672 1.26043 0.93157 0.98919 0.95179 1.69739 1.35571 1.39651 1.00159 0.86378 0.80682 0.81601 0.77825 1.20035 1.22188 1.16975 1.20633 1.05926 0.98998 0.93473 1.20045 1.06659 0.92809 0.97544 1.22145 0.94812 1.00401 0.94276 0.90296 1.22369 0.97054 1.00491 0.95753 1.22926 0.92212 0.94525 0.99971 1.63732 1.05522 1.46354 1.14275 1.22927 0.95518 1.01574 0.88540 0.92632 0.92873 0.91923 0.78216 0.89038 0.88267 0.90941 0.88316 0.88805 0.91055 0.90733 0.90432 0.94157 0.85023 0.93433 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.14 37.16 0.34 -1.75 16 2 C 0.17 2.15 1.58 -67.92 -0.11 2.04 16 3 H 0.07 1.00 6.41 -51.93 -0.33 0.67 16 4 N -0.75 -11.65 4.96 -52.02 -0.26 -11.91 16 5 C 0.10 1.90 6.65 -83.69 -0.56 1.34 16 6 C -0.14 -3.10 9.82 -39.77 -0.39 -3.49 16 7 C -0.20 -4.79 7.11 -39.26 -0.28 -5.07 16 8 C 0.06 1.52 5.10 -106.79 -0.55 0.98 16 9 C -0.46 -12.73 9.55 -37.87 -0.36 -13.10 16 10 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 11 C 0.08 2.26 5.40 -17.34 -0.09 2.17 16 12 N -0.82 -22.94 13.93 55.54 0.77 -22.16 16 13 Si 0.91 21.56 24.51 -169.99 -4.17 17.40 16 14 H -0.27 -6.32 6.70 56.52 0.38 -5.94 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.25 -5.99 6.87 56.52 0.39 -5.60 16 17 C -0.17 -3.98 9.74 -39.27 -0.38 -4.36 16 18 C -0.15 -3.07 8.73 -39.77 -0.35 -3.42 16 19 C -0.10 -1.04 2.71 -89.24 -0.24 -1.29 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.12 -1.10 6.11 -25.35 -0.15 -1.26 16 22 C 0.03 0.30 7.47 -2.18 -0.02 0.29 16 23 N -0.67 -6.85 7.62 -109.66 -0.84 -7.69 16 24 C 0.04 0.49 6.77 -2.18 -0.01 0.48 16 25 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.90 7.64 -51.93 -0.40 0.51 16 28 H 0.39 5.43 8.60 -40.82 -0.35 5.08 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.10 2.45 4.73 -52.49 -0.25 2.20 16 31 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 32 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 33 H 0.09 1.71 6.03 -52.49 -0.32 1.40 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.66 6.39 -51.93 -0.33 0.33 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.33 2.98 8.92 -39.29 -0.35 2.63 16 39 H 0.05 0.60 7.83 -51.93 -0.41 0.19 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -28.39 311.96 -8.99 -37.38 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.05 Total: 8.72 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -3.15 Total: -26.43 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.32 Total: -41.76 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.39 -8.99 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.647 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds