Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47255 * 2 1 4 4 N 1.46507 * 109.46582 * 119.99524 * 2 1 3 5 5 C 1.38858 * 119.99849 * 274.99823 * 4 2 1 6 6 C 1.39569 * 119.83664 * 180.02562 * 5 4 2 7 7 C 1.36335 * 120.15626 * 179.72500 * 6 5 4 8 8 C 1.40890 * 119.83802 * 0.25652 * 7 6 5 9 9 C 1.41141 * 120.15596 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99962 * 150.12898 * 9 8 7 11 11 C 1.39864 * 120.00104 * 330.13692 * 9 8 7 12 12 N 1.30902 * 120.00385 * 161.71874 * 11 9 8 13 13 Si 1.86807 * 119.99967 * 341.71610 * 11 9 8 14 14 H 1.48499 * 109.47082 * 95.41655 * 13 11 9 15 15 H 1.48500 * 109.47289 * 215.41819 * 13 11 9 16 16 H 1.48504 * 109.46951 * 335.42080 * 13 11 9 17 17 C 1.40883 * 119.68946 * 359.97438 * 8 7 6 18 18 C 1.36339 * 119.83868 * 0.02562 * 17 8 7 19 19 C 1.53003 * 109.47372 * 239.99469 * 2 1 3 20 20 H 1.08996 * 110.28811 * 297.87279 * 19 2 1 21 21 C 1.54259 * 110.31870 * 60.00279 * 19 2 1 22 22 C 1.54379 * 105.05793 * 118.89853 * 21 19 2 23 23 N 1.48557 * 104.60013 * 23.84641 * 22 21 19 24 24 C 1.48562 * 104.22049 * 320.52000 * 23 22 21 25 25 H 1.09004 * 109.46931 * 60.00559 * 1 2 3 26 26 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47334 * 300.00719 * 1 2 3 28 28 H 0.96993 * 119.99938 * 95.00517 * 4 2 1 29 29 H 1.07993 * 119.92397 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.08042 * 180.27899 * 7 6 5 31 31 H 0.96995 * 120.00508 * 179.97438 * 12 11 9 32 32 H 1.08005 * 120.08136 * 179.97438 * 17 8 7 33 33 H 1.07997 * 119.92498 * 180.02562 * 18 17 8 34 34 H 1.09004 * 110.32207 * 237.78747 * 21 19 2 35 35 H 1.08992 * 110.32737 * 359.97438 * 21 19 2 36 36 H 1.09000 * 110.41281 * 142.62612 * 22 21 19 37 37 H 1.08999 * 110.40993 * 264.94875 * 22 21 19 38 38 H 1.00900 * 111.00509 * 200.96465 * 23 22 21 39 39 H 1.08991 * 110.41164 * 280.70216 * 24 23 22 40 40 H 1.09004 * 110.41245 * 158.25597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1508 0.0023 2.3924 6 6 2.6168 -0.6588 3.5298 7 6 2.7548 0.0165 4.7061 8 6 2.4206 1.3835 4.7730 9 6 2.5603 2.0890 5.9875 10 1 2.7817 3.1460 5.9756 11 6 2.4123 1.4192 7.2064 12 7 2.8799 1.9518 8.3069 13 14 1.5473 -0.2355 7.2638 14 1 2.5559 -1.3237 7.2036 15 1 0.7742 -0.3464 8.5269 16 1 0.6240 -0.3518 6.1065 17 6 1.9463 2.0431 3.6220 18 6 1.8133 1.3552 2.4524 19 6 2.0401 -0.7214 -1.2492 20 1 1.7155 -1.7618 -1.2438 21 6 1.5368 -0.0096 -2.5218 22 6 2.8148 0.4437 -3.2598 23 7 3.8749 -0.4757 -2.7722 24 6 3.5798 -0.6381 -1.3252 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8898 28 1 2.2490 -1.6316 1.1528 29 1 2.8732 -1.7065 3.4769 30 1 3.1197 -0.4952 5.5845 31 1 2.7770 1.4875 9.1523 32 1 1.6878 3.0908 3.6662 33 1 1.4502 1.8595 1.5691 34 1 0.9667 -0.7012 -3.1421 35 1 0.9261 0.8534 -2.2566 36 1 2.6883 0.3404 -4.3375 37 1 3.0562 1.4752 -3.0034 38 1 4.7913 -0.0774 -2.9118 39 1 3.9421 0.2234 -0.7644 40 1 4.0293 -1.5560 -0.9463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400420831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = 0.045554 kcal Electronic energy + Delta-G solvation = -19272.211419 eV Core-core repulsion = 16470.995907 eV Total energy + Delta-G solvation = -2801.215512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51889 -39.42799 -36.88231 -35.10993 -33.06054 -31.64651 -30.70490 -29.59991 -29.19233 -26.09078 -24.07775 -22.90672 -22.41833 -21.97813 -20.63299 -19.21210 -18.14970 -17.61594 -16.99943 -16.83625 -15.90131 -15.49245 -15.19646 -14.96526 -14.59386 -14.36924 -14.23831 -14.01807 -13.89716 -13.66601 -13.24183 -13.15901 -12.75394 -12.58437 -12.44271 -12.30174 -12.13577 -11.95420 -11.83401 -11.75055 -11.39298 -11.27289 -10.98747 -10.43253 -9.57121 -9.56197 -8.76433 -8.27294 -6.16666 0.88196 0.98235 1.28688 1.43607 1.52239 2.18520 2.71669 2.79077 3.31671 3.60739 3.68762 3.89411 3.94629 4.24520 4.28097 4.34755 4.42712 4.48768 4.50696 4.71747 4.73441 4.80873 4.85841 4.92289 4.98588 5.03927 5.08464 5.10168 5.18676 5.25327 5.34998 5.43059 5.56897 5.61667 5.77780 5.80189 6.00430 6.25761 6.35964 6.44194 6.69691 6.91714 7.00269 7.22502 8.34387 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039972 B = 0.004325 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.318035 B = 6472.931929 C = 6525.629515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.062 0.938 4 N -0.742 5.742 5 C 0.132 3.868 6 C -0.160 4.160 7 C -0.199 4.199 8 C 0.025 3.975 9 C -0.491 4.491 10 H 0.047 0.953 11 C 0.042 3.958 12 N -0.872 5.872 13 Si 0.965 3.035 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.255 1.255 17 C -0.173 4.173 18 C -0.154 4.154 19 C -0.089 4.089 20 H 0.085 0.915 21 C -0.116 4.116 22 C 0.031 3.969 23 N -0.676 5.676 24 C 0.044 3.956 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.397 0.603 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.287 0.713 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.341 0.659 39 H 0.031 0.969 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -7.089 -21.117 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.080 0.920 4 N -0.375 5.375 5 C 0.031 3.969 6 C -0.182 4.182 7 C -0.219 4.219 8 C 0.022 3.978 9 C -0.523 4.523 10 H 0.065 0.935 11 C -0.169 4.169 12 N -0.501 5.501 13 Si 0.789 3.211 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.178 1.178 17 C -0.193 4.193 18 C -0.176 4.176 19 C -0.108 4.108 20 H 0.103 0.897 21 C -0.154 4.154 22 C -0.098 4.098 23 N -0.305 5.305 24 C -0.085 4.085 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.232 0.768 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.157 0.843 39 H 0.049 0.951 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.433 -7.544 -21.232 22.792 hybrid contribution 0.364 0.479 1.320 1.451 sum -3.070 -7.065 -19.912 21.350 Atomic orbital electron populations 1.22301 0.95804 1.02354 1.01930 1.20864 0.93600 0.95902 0.83801 0.91997 1.44075 1.75571 1.11743 1.06150 1.17439 1.01197 0.91462 0.86785 1.20183 1.06396 0.99386 0.92218 1.20690 1.08138 0.95546 0.97518 1.17724 0.93880 0.92565 0.93666 1.19269 1.45726 0.96695 0.90614 0.93458 1.26709 0.93536 1.02088 0.94542 1.69782 1.37897 1.41580 1.00842 0.85500 0.79692 0.78171 0.77713 1.18692 1.20955 1.17842 1.20804 1.05327 0.99326 0.93860 1.20273 1.06525 0.93312 0.97536 1.22060 0.94399 1.00603 0.93771 0.89671 1.22395 0.97259 1.00851 0.94937 1.23004 0.91751 0.94347 1.00730 1.63742 1.06327 1.47022 1.13375 1.22873 0.95832 1.00710 0.89133 0.90140 0.92257 0.94094 0.76848 0.86042 0.88921 0.90280 0.88306 0.85988 0.89921 0.90013 0.89186 0.94073 0.84314 0.95086 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.14 71.98 0.66 -2.75 16 2 C 0.16 3.61 1.58 44.99 0.07 3.68 16 3 H 0.06 1.53 6.41 -2.39 -0.02 1.51 16 4 N -0.74 -20.09 4.96 -318.51 -1.58 -21.67 16 5 C 0.13 4.82 6.65 38.67 0.26 5.08 16 6 C -0.16 -6.47 9.82 22.15 0.22 -6.25 16 7 C -0.20 -9.62 7.11 22.48 0.16 -9.46 16 8 C 0.02 1.31 5.10 -21.27 -0.11 1.20 16 9 C -0.49 -29.05 9.55 23.38 0.22 -28.83 16 10 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 11 C 0.04 2.38 5.40 85.22 0.46 2.84 16 12 N -0.87 -50.88 13.93 21.82 0.30 -50.58 16 13 Si 0.96 45.23 24.51 68.60 1.68 46.91 16 14 H -0.26 -11.56 6.70 99.48 0.67 -10.89 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.25 -12.10 6.87 99.48 0.68 -11.42 16 17 C -0.17 -8.13 9.74 22.47 0.22 -7.91 16 18 C -0.15 -6.07 8.73 22.15 0.19 -5.87 16 19 C -0.09 -1.57 2.71 -9.90 -0.03 -1.60 16 20 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.12 -1.68 6.11 31.49 0.19 -1.49 16 22 C 0.03 0.46 7.47 86.45 0.65 1.10 16 23 N -0.68 -11.83 7.62 -500.86 -3.82 -15.64 16 24 C 0.04 0.86 6.77 86.45 0.59 1.45 16 25 H 0.08 1.28 6.50 -2.38 -0.02 1.27 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 1.04 7.64 -2.39 -0.02 1.02 16 28 H 0.40 9.44 8.60 -92.71 -0.80 8.64 16 29 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.09 4.55 4.73 -2.91 -0.01 4.53 16 31 H 0.29 15.15 8.30 -92.71 -0.77 14.38 16 32 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.12 4.09 6.03 -2.91 -0.02 4.08 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.08 6.39 -2.39 -0.02 1.07 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.34 5.25 8.92 -89.69 -0.80 4.44 16 39 H 0.03 0.71 7.83 -2.39 -0.02 0.69 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.54 311.96 -0.28 -63.82 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.61 Total: 25.97 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 3.75 Total: -48.80 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -5.09 Total: -87.89 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.68 Total: 46.91 kcal Total: -63.54 -0.28 -63.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400420831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.863 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds