Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46910 * 2 1 4 4 N 1.46497 * 109.47256 * 239.99861 * 2 1 3 5 5 C 1.38865 * 119.99860 * 84.99600 * 4 2 1 6 6 C 1.39574 * 119.84117 * 180.02562 * 5 4 2 7 7 C 1.36335 * 120.15875 * 180.02562 * 6 5 4 8 8 C 1.40886 * 119.83947 * 0.25591 * 7 6 5 9 9 C 1.41135 * 120.15680 * 179.72157 * 8 7 6 10 10 H 1.08000 * 120.00157 * 150.12842 * 9 8 7 11 11 C 1.39876 * 119.99763 * 330.12558 * 9 8 7 12 12 N 1.30896 * 119.99615 * 161.72114 * 11 9 8 13 13 Si 1.86796 * 119.99980 * 341.72244 * 11 9 8 14 14 H 1.48499 * 109.47361 * 95.41642 * 13 11 9 15 15 H 1.48503 * 109.47035 * 215.41285 * 13 11 9 16 16 H 1.48499 * 109.47536 * 335.41174 * 13 11 9 17 17 C 1.40890 * 119.68505 * 359.44826 * 8 7 6 18 18 C 1.36332 * 119.83558 * 0.54681 * 17 8 7 19 19 C 1.52997 * 109.47305 * 119.99805 * 2 1 3 20 20 H 1.08997 * 110.36700 * 57.35021 * 19 2 1 21 21 C 1.54378 * 110.41360 * 295.00137 * 19 2 1 22 22 C 1.54257 * 105.06331 * 217.36719 * 21 19 2 23 23 C 1.54378 * 105.06046 * 0.02562 * 22 21 19 24 24 N 1.48559 * 110.41320 * 179.82884 * 19 2 1 25 25 H 1.08997 * 109.47308 * 60.00259 * 1 2 3 26 26 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47332 * 299.99931 * 1 2 3 28 28 H 0.97000 * 120.00425 * 265.00202 * 4 2 1 29 29 H 1.08001 * 119.91582 * 0.02562 * 6 5 4 30 30 H 1.08001 * 120.07802 * 179.97438 * 7 6 5 31 31 H 0.97008 * 120.00200 * 180.02562 * 12 11 9 32 32 H 1.07999 * 120.07563 * 180.27526 * 17 8 7 33 33 H 1.08003 * 119.91954 * 179.72201 * 18 17 8 34 34 H 1.09009 * 110.32254 * 336.26251 * 21 19 2 35 35 H 1.09004 * 110.32603 * 98.36621 * 21 19 2 36 36 H 1.09006 * 110.32430 * 118.88985 * 22 21 19 37 37 H 1.08994 * 110.32610 * 241.10325 * 22 21 19 38 38 H 1.08996 * 110.41327 * 142.62681 * 23 22 21 39 39 H 1.08998 * 110.41036 * 265.07437 * 23 22 21 40 40 H 1.00902 * 110.99828 * 277.81739 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1509 0.0021 -2.3923 6 6 2.6160 -0.6593 -3.5300 7 6 2.7491 0.0147 -4.7077 8 6 2.4210 1.3833 -4.7731 9 6 2.5619 2.0888 -5.9873 10 1 1.9126 2.9240 -6.2050 11 6 3.5424 1.7065 -6.9086 12 7 3.4578 2.0983 -8.1547 13 14 4.9724 0.6369 -6.3608 14 1 4.6639 -0.7871 -6.6477 15 1 6.1991 1.0355 -7.0967 16 1 5.1913 0.8118 -4.9025 17 6 1.9462 2.0427 -3.6222 18 6 1.8180 1.3562 -2.4514 19 6 2.0400 -0.7212 1.2492 20 1 1.6467 -1.7370 1.2880 21 6 1.6430 0.0587 2.5210 22 6 2.8468 -0.0893 3.4742 23 6 3.8702 -0.9456 2.6979 24 7 3.5254 -0.7370 1.2683 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 2.8710 -1.7074 -3.4773 30 1 3.1095 -0.4983 -5.5871 31 1 4.1376 1.8329 -8.7939 32 1 1.6886 3.0906 -3.6664 33 1 1.4584 1.8615 -1.5672 34 1 1.4748 1.1093 2.2838 35 1 0.7487 -0.3757 2.9678 36 1 3.2696 0.8886 3.7048 37 1 2.5445 -0.5975 4.3898 38 1 4.8845 -0.6010 2.8989 39 1 3.7653 -1.9974 2.9639 40 1 3.8864 -1.4856 0.6961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400442869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = 19.878362 kcal Electronic energy + Delta-G solvation = -19254.398620 eV Core-core repulsion = 16454.043123 eV Total energy + Delta-G solvation = -2800.355497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.25608 -37.92231 -35.37416 -33.18656 -31.35661 -30.42001 -29.77480 -28.48926 -27.60527 -24.33861 -22.75398 -21.69323 -20.99106 -20.20785 -19.70816 -17.26213 -17.08534 -16.15502 -15.97726 -14.92002 -14.78127 -14.21355 -13.77948 -13.29187 -13.11347 -12.94069 -12.70998 -12.46501 -12.27693 -12.25832 -12.19599 -11.84924 -11.62405 -11.47581 -11.18264 -10.93950 -10.76355 -10.67275 -10.47819 -10.15511 -9.84942 -9.45424 -9.09220 -8.69338 -8.61767 -7.69893 -6.70885 -6.52315 -4.10035 2.76463 2.88315 3.24236 3.34542 3.47051 3.97676 4.16115 4.17620 4.59568 4.61574 4.70733 4.85140 4.99413 5.21226 5.37400 5.40017 5.54217 5.62396 5.64372 5.67685 5.72562 5.81271 5.92090 5.97885 6.06034 6.10275 6.24418 6.37334 6.60875 6.71385 6.76657 6.98011 7.20028 7.21735 7.38602 7.46289 7.68029 8.00503 8.13449 8.39526 8.55267 8.63822 8.91481 9.05432 10.33771 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.004569 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.157778 B = 6126.803096 C = 6519.531269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.080 0.920 4 N -0.751 5.751 5 C 0.102 3.898 6 C -0.146 4.146 7 C -0.196 4.196 8 C 0.058 3.942 9 C -0.456 4.456 10 H 0.085 0.915 11 C 0.083 3.917 12 N -0.827 5.827 13 Si 0.907 3.093 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.246 1.246 17 C -0.169 4.169 18 C -0.147 4.147 19 C 0.060 3.940 20 H 0.047 0.953 21 C -0.117 4.117 22 C -0.124 4.124 23 C 0.034 3.966 24 N -0.653 5.653 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.381 0.619 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.280 0.720 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 -6.739 19.401 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.067 3.933 3 H 0.098 0.902 4 N -0.385 5.385 5 C 0.005 3.995 6 C -0.168 4.168 7 C -0.216 4.216 8 C 0.055 3.945 9 C -0.487 4.487 10 H 0.103 0.897 11 C -0.133 4.133 12 N -0.453 5.453 13 Si 0.735 3.265 14 H -0.201 1.201 15 H -0.223 1.223 16 H -0.169 1.169 17 C -0.189 4.189 18 C -0.169 4.169 19 C -0.050 4.050 20 H 0.065 0.935 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.095 4.095 24 N -0.282 5.282 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.213 0.787 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.325 -5.786 19.177 20.075 hybrid contribution 0.532 -1.876 0.163 1.957 sum -0.792 -7.662 19.341 20.818 Atomic orbital electron populations 1.22336 0.96916 1.01658 1.01901 1.20593 0.92137 0.97156 0.83451 0.90223 1.43826 1.76897 1.10789 1.06954 1.17256 1.04848 0.91813 0.85617 1.19879 1.06274 0.97799 0.92859 1.20599 1.09583 0.94844 0.96560 1.17627 0.92854 0.91183 0.92861 1.19267 1.15975 1.14792 0.98630 0.89706 1.26033 0.99253 0.94303 0.93689 1.69745 1.33183 1.39616 1.02798 0.86383 0.79610 0.79439 0.81073 1.20129 1.22267 1.16895 1.20631 1.07839 0.98169 0.92267 1.20038 1.06518 0.92722 0.97578 1.22755 0.88831 0.97950 0.95465 0.93530 1.22301 0.97603 1.01320 0.94298 1.22289 0.95620 1.00585 0.97768 1.22902 0.99771 0.97611 0.89263 1.63570 1.08206 1.49721 1.06747 0.91680 0.93114 0.92695 0.78736 0.89206 0.88352 0.91021 0.88325 0.88710 0.90619 0.91395 0.91016 0.91646 0.90304 0.94661 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.23 37.16 0.34 -1.74 16 2 C 0.17 2.35 1.93 -67.94 -0.13 2.22 16 3 H 0.08 1.24 6.39 -51.93 -0.33 0.91 16 4 N -0.75 -11.92 5.08 -52.03 -0.26 -12.19 16 5 C 0.10 2.07 6.65 -83.68 -0.56 1.52 16 6 C -0.15 -3.20 9.82 -39.77 -0.39 -3.59 16 7 C -0.20 -4.87 7.11 -39.27 -0.28 -5.15 16 8 C 0.06 1.53 5.10 -106.79 -0.55 0.98 16 9 C -0.46 -12.93 9.55 -37.87 -0.36 -13.29 16 10 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.08 2.29 5.40 -17.34 -0.09 2.20 16 12 N -0.83 -23.29 13.93 55.54 0.77 -22.51 16 13 Si 0.91 21.91 24.51 -169.99 -4.17 17.74 16 14 H -0.27 -6.43 6.70 56.52 0.38 -6.05 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.25 -6.09 6.87 56.52 0.39 -5.70 16 17 C -0.17 -4.04 9.74 -39.27 -0.38 -4.42 16 18 C -0.15 -3.12 8.74 -39.77 -0.35 -3.47 16 19 C 0.06 0.67 2.76 -66.07 -0.18 0.49 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 C -0.12 -1.09 5.61 -25.35 -0.14 -1.24 16 22 C -0.12 -1.07 7.00 -25.35 -0.18 -1.24 16 23 C 0.03 0.32 7.47 -2.20 -0.02 0.30 16 24 N -0.65 -7.63 7.15 -102.77 -0.73 -8.36 16 25 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.57 7.43 -51.93 -0.39 0.18 16 28 H 0.38 5.44 8.60 -40.82 -0.35 5.09 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.10 2.47 4.73 -52.49 -0.25 2.22 16 31 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.09 1.80 6.04 -52.48 -0.32 1.48 16 34 H 0.08 0.74 7.82 -51.92 -0.41 0.34 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.34 3.84 8.92 -39.29 -0.35 3.48 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -29.09 314.52 -9.10 -38.19 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.19 Total: 8.84 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -3.26 Total: -26.46 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.22 Total: -43.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.17 Total: 17.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.09 -9.10 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.071 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds