Wall clock time and date at job start Mon Mar 30 2020 06:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46910 * 2 1 4 4 N 1.46497 * 109.47256 * 239.99861 * 2 1 3 5 5 C 1.38865 * 119.99860 * 84.99600 * 4 2 1 6 6 C 1.39574 * 119.84117 * 180.02562 * 5 4 2 7 7 C 1.36335 * 120.15875 * 180.02562 * 6 5 4 8 8 C 1.40886 * 119.83947 * 0.25591 * 7 6 5 9 9 C 1.41135 * 120.15680 * 179.72157 * 8 7 6 10 10 H 1.08000 * 120.00157 * 150.12842 * 9 8 7 11 11 C 1.39876 * 119.99763 * 330.12558 * 9 8 7 12 12 N 1.30896 * 119.99615 * 161.72114 * 11 9 8 13 13 Si 1.86796 * 119.99980 * 341.72244 * 11 9 8 14 14 H 1.48499 * 109.47361 * 95.41642 * 13 11 9 15 15 H 1.48503 * 109.47035 * 215.41285 * 13 11 9 16 16 H 1.48499 * 109.47536 * 335.41174 * 13 11 9 17 17 C 1.40890 * 119.68505 * 359.44826 * 8 7 6 18 18 C 1.36332 * 119.83558 * 0.54681 * 17 8 7 19 19 C 1.52997 * 109.47305 * 119.99805 * 2 1 3 20 20 H 1.08997 * 110.36700 * 57.35021 * 19 2 1 21 21 C 1.54378 * 110.41360 * 295.00137 * 19 2 1 22 22 C 1.54257 * 105.06331 * 217.36719 * 21 19 2 23 23 C 1.54378 * 105.06046 * 0.02562 * 22 21 19 24 24 N 1.48559 * 110.41320 * 179.82884 * 19 2 1 25 25 H 1.08997 * 109.47308 * 60.00259 * 1 2 3 26 26 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47332 * 299.99931 * 1 2 3 28 28 H 0.97000 * 120.00425 * 265.00202 * 4 2 1 29 29 H 1.08001 * 119.91582 * 0.02562 * 6 5 4 30 30 H 1.08001 * 120.07802 * 179.97438 * 7 6 5 31 31 H 0.97008 * 120.00200 * 180.02562 * 12 11 9 32 32 H 1.07999 * 120.07563 * 180.27526 * 17 8 7 33 33 H 1.08003 * 119.91954 * 179.72201 * 18 17 8 34 34 H 1.09009 * 110.32254 * 336.26251 * 21 19 2 35 35 H 1.09004 * 110.32603 * 98.36621 * 21 19 2 36 36 H 1.09006 * 110.32430 * 118.88985 * 22 21 19 37 37 H 1.08994 * 110.32610 * 241.10325 * 22 21 19 38 38 H 1.08996 * 110.41327 * 142.62681 * 23 22 21 39 39 H 1.08998 * 110.41036 * 265.07437 * 23 22 21 40 40 H 1.00902 * 110.99828 * 277.81739 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1509 0.0021 -2.3923 6 6 2.6160 -0.6593 -3.5300 7 6 2.7491 0.0147 -4.7077 8 6 2.4210 1.3833 -4.7731 9 6 2.5619 2.0888 -5.9873 10 1 1.9126 2.9240 -6.2050 11 6 3.5424 1.7065 -6.9086 12 7 3.4578 2.0983 -8.1547 13 14 4.9724 0.6369 -6.3608 14 1 4.6639 -0.7871 -6.6477 15 1 6.1991 1.0355 -7.0967 16 1 5.1913 0.8118 -4.9025 17 6 1.9462 2.0427 -3.6222 18 6 1.8180 1.3562 -2.4514 19 6 2.0400 -0.7212 1.2492 20 1 1.6467 -1.7370 1.2880 21 6 1.6430 0.0587 2.5210 22 6 2.8468 -0.0893 3.4742 23 6 3.8702 -0.9456 2.6979 24 7 3.5254 -0.7370 1.2683 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 2.8710 -1.7074 -3.4773 30 1 3.1095 -0.4983 -5.5871 31 1 4.1376 1.8329 -8.7939 32 1 1.6886 3.0906 -3.6664 33 1 1.4584 1.8615 -1.5672 34 1 1.4748 1.1093 2.2838 35 1 0.7487 -0.3757 2.9678 36 1 3.2696 0.8886 3.7048 37 1 2.5445 -0.5975 4.3898 38 1 4.8845 -0.6010 2.8989 39 1 3.7653 -1.9974 2.9639 40 1 3.8864 -1.4856 0.6961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:54 Heat of formation + Delta-G solvation = 0.177381 kcal Electronic energy + Delta-G solvation = -19255.252919 eV Core-core repulsion = 16454.043123 eV Total energy + Delta-G solvation = -2801.209796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41639 -39.38087 -36.79619 -35.03592 -32.80094 -31.59371 -31.26089 -30.07751 -28.49041 -26.10552 -24.10628 -23.05734 -22.17278 -21.67555 -20.77310 -19.18995 -18.28001 -17.43707 -17.27646 -16.60952 -15.94445 -15.36791 -15.35237 -14.96193 -14.49597 -14.25272 -14.11462 -13.92097 -13.73332 -13.69807 -13.30793 -13.00736 -12.75485 -12.58033 -12.49247 -12.35028 -12.06567 -11.98181 -11.85701 -11.67472 -11.39022 -11.31759 -10.92674 -10.41675 -9.53433 -9.47275 -8.74807 -8.23748 -6.14036 0.90685 1.01047 1.29505 1.44865 1.53883 2.20213 2.73919 2.80819 3.25984 3.64167 3.80711 3.83452 4.09954 4.21712 4.32137 4.33589 4.38344 4.56547 4.57606 4.66319 4.74177 4.82841 4.89195 4.96019 5.04515 5.05350 5.09076 5.14118 5.22700 5.26937 5.35596 5.39417 5.59338 5.63362 5.82868 5.92118 6.02419 6.28271 6.40013 6.46135 6.72088 6.93952 7.02666 7.25172 8.36112 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.004569 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.157778 B = 6126.803096 C = 6519.531269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.061 0.939 4 N -0.738 5.738 5 C 0.136 3.864 6 C -0.161 4.161 7 C -0.199 4.199 8 C 0.024 3.976 9 C -0.492 4.492 10 H 0.047 0.953 11 C 0.042 3.958 12 N -0.873 5.873 13 Si 0.965 3.035 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.256 1.256 17 C -0.173 4.173 18 C -0.154 4.154 19 C 0.066 3.934 20 H 0.060 0.940 21 C -0.116 4.116 22 C -0.123 4.123 23 C 0.034 3.966 24 N -0.676 5.676 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.394 0.606 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.287 0.713 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -9.107 23.052 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.064 3.936 3 H 0.079 0.921 4 N -0.370 5.370 5 C 0.036 3.964 6 C -0.183 4.183 7 C -0.218 4.218 8 C 0.021 3.979 9 C -0.523 4.523 10 H 0.065 0.935 11 C -0.169 4.169 12 N -0.502 5.502 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.210 1.210 16 H -0.180 1.180 17 C -0.193 4.193 18 C -0.176 4.176 19 C -0.044 4.044 20 H 0.077 0.923 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.096 4.096 24 N -0.305 5.305 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.228 0.772 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.245 -8.179 22.881 24.331 hybrid contribution 0.376 -1.191 -0.651 1.408 sum -0.869 -9.370 22.230 24.140 Atomic orbital electron populations 1.22256 0.95601 1.02334 1.02021 1.20777 0.93027 0.96331 0.83474 0.92078 1.43944 1.75514 1.11408 1.06178 1.17420 1.00773 0.91479 0.86747 1.20166 1.06546 0.99367 0.92232 1.20677 1.09274 0.94267 0.97627 1.17714 0.95210 0.92159 0.92850 1.19267 1.17104 1.15159 1.00798 0.93480 1.26699 1.00978 0.95652 0.93538 1.69785 1.34633 1.42060 1.03719 0.85495 0.77100 0.78591 0.79846 1.18636 1.20963 1.17984 1.20795 1.07215 0.98548 0.92734 1.20257 1.06531 0.93367 0.97460 1.22682 0.88670 0.98432 0.94622 0.92255 1.22333 0.98711 1.00795 0.93661 1.22306 0.95003 1.00533 0.98258 1.22950 0.99977 0.98593 0.88031 1.63562 1.08579 1.50162 1.08236 0.93947 0.92133 0.90282 0.77206 0.86058 0.88920 0.90312 0.88386 0.86195 0.91310 0.89493 0.91426 0.89734 0.90459 0.93337 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.23 71.98 0.66 -2.78 16 2 C 0.17 4.00 1.93 44.99 0.09 4.09 16 3 H 0.06 1.72 6.39 -2.39 -0.02 1.70 16 4 N -0.74 -20.72 5.08 -318.54 -1.62 -22.34 16 5 C 0.14 5.17 6.65 38.67 0.26 5.43 16 6 C -0.16 -6.66 9.82 22.15 0.22 -6.44 16 7 C -0.20 -9.77 7.11 22.47 0.16 -9.61 16 8 C 0.02 1.28 5.10 -21.27 -0.11 1.18 16 9 C -0.49 -29.50 9.55 23.38 0.22 -29.28 16 10 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 11 C 0.04 2.41 5.40 85.23 0.46 2.87 16 12 N -0.87 -51.47 13.93 21.82 0.30 -51.17 16 13 Si 0.97 45.96 24.51 68.60 1.68 47.64 16 14 H -0.26 -11.68 6.70 99.48 0.67 -11.01 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.26 -12.45 6.87 99.48 0.68 -11.76 16 17 C -0.17 -8.36 9.74 22.47 0.22 -8.14 16 18 C -0.15 -6.31 8.74 22.14 0.19 -6.12 16 19 C 0.07 1.20 2.76 45.06 0.12 1.33 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 C -0.12 -1.72 5.61 31.49 0.18 -1.55 16 22 C -0.12 -1.66 7.00 31.49 0.22 -1.44 16 23 C 0.03 0.52 7.47 86.45 0.65 1.16 16 24 N -0.68 -13.57 7.15 -479.07 -3.42 -16.99 16 25 H 0.04 1.10 7.66 -2.39 -0.02 1.08 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.31 7.43 -2.38 -0.02 1.29 16 28 H 0.39 9.52 8.60 -92.71 -0.80 8.72 16 29 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.09 4.61 4.73 -2.91 -0.01 4.60 16 31 H 0.29 15.29 8.30 -92.70 -0.77 14.53 16 32 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.12 4.29 6.04 -2.91 -0.02 4.27 16 34 H 0.07 1.12 7.82 -2.38 -0.02 1.10 16 35 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.34 6.56 8.92 -89.69 -0.80 5.76 16 Total: -1.00 -65.32 314.52 -0.13 -65.45 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.62 Total: 26.73 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 3.54 Total: -49.31 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -4.74 Total: -90.51 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.68 Total: 47.64 kcal Total: -65.32 -0.13 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.632 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds