Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 N 1.46494 * 109.47016 * 120.00449 * 2 1 3 5 5 C 1.38863 * 119.99719 * 274.99586 * 4 2 1 6 6 C 1.39568 * 119.84059 * 180.02562 * 5 4 2 7 7 C 1.36341 * 120.16110 * 180.02562 * 6 5 4 8 8 C 1.40885 * 119.83419 * 359.97438 * 7 6 5 9 9 C 1.41130 * 120.15447 * 180.02562 * 8 7 6 10 10 H 1.08009 * 120.00098 * 205.46003 * 9 8 7 11 11 C 1.39863 * 120.00332 * 25.45533 * 9 8 7 12 12 N 1.30904 * 120.00075 * 16.95350 * 11 9 8 13 13 Si 1.86800 * 120.00244 * 196.95126 * 11 9 8 14 14 H 1.48504 * 109.47152 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.47258 * 300.00188 * 13 11 9 16 16 H 1.48503 * 109.47285 * 60.00410 * 13 11 9 17 17 C 1.40884 * 119.68855 * 0.27534 * 8 7 6 18 18 C 1.36341 * 119.83730 * 359.44243 * 17 8 7 19 19 C 1.53008 * 109.47065 * 240.00144 * 2 1 3 20 20 H 1.08998 * 109.87686 * 300.42792 * 19 2 1 21 21 C 1.54312 * 109.88699 * 179.22220 * 19 2 1 22 22 C 1.55148 * 103.01880 * 218.30873 * 21 19 2 23 23 C 1.54909 * 101.65133 * 35.65598 * 22 21 19 24 24 N 1.47450 * 109.88891 * 61.45285 * 19 2 1 25 25 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47096 * 299.99571 * 1 2 3 27 27 H 1.09003 * 109.47370 * 59.99914 * 1 2 3 28 28 H 0.96996 * 120.00458 * 95.00417 * 4 2 1 29 29 H 1.07998 * 119.91965 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.08368 * 179.97438 * 7 6 5 31 31 H 0.96991 * 120.00583 * 180.02562 * 12 11 9 32 32 H 1.08007 * 120.07752 * 179.70544 * 17 8 7 33 33 H 1.08000 * 119.91749 * 180.27494 * 18 17 8 34 34 H 1.08998 * 110.71218 * 336.69534 * 21 19 2 35 35 H 1.09001 * 110.70418 * 99.93311 * 21 19 2 36 36 H 1.08997 * 110.99237 * 277.56527 * 22 21 19 37 37 H 1.08998 * 110.99087 * 153.74616 * 22 21 19 38 38 H 1.08999 * 110.37380 * 204.09924 * 23 22 21 39 39 H 1.08999 * 110.37211 * 81.75812 * 23 22 21 40 40 H 1.00909 * 110.99648 * 356.14904 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1509 0.0020 2.3922 6 6 2.6170 -0.6591 3.5296 7 6 2.7492 0.0146 4.7076 8 6 2.4147 1.3815 4.7747 9 6 2.5495 2.0855 5.9904 10 1 1.9447 2.9605 6.1777 11 6 3.4663 1.6501 6.9528 12 7 4.4195 0.8172 6.6192 13 14 3.3306 2.2571 8.7142 14 1 4.4134 1.6525 9.5310 15 1 3.4594 3.7363 8.7393 16 1 2.0114 1.8656 9.2725 17 6 1.9399 2.0410 3.6238 18 6 1.8181 1.3561 2.4512 19 6 2.0400 -0.7213 -1.2493 20 1 1.6741 -1.7479 -1.2599 21 6 3.5829 -0.7098 -1.2689 22 6 3.9118 -0.4957 -2.7699 23 6 2.7685 0.4531 -3.2085 24 7 1.5825 -0.0133 -2.4591 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1525 29 1 2.8726 -1.7070 3.4768 30 1 3.1096 -0.4983 5.5870 31 1 5.0550 0.5149 7.2866 32 1 1.6771 3.0876 3.6693 33 1 1.4585 1.8615 1.5671 34 1 3.9700 0.1133 -0.6683 35 1 3.9799 -1.6630 -0.9197 36 1 3.8693 -1.4373 -3.3172 37 1 4.8840 -0.0183 -2.8924 38 1 2.5965 0.3695 -4.2815 39 1 3.0060 1.4826 -2.9405 40 1 0.9792 0.7593 -2.2196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400442871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = 17.685848 kcal Electronic energy + Delta-G solvation = -19210.681891 eV Core-core repulsion = 16410.231319 eV Total energy + Delta-G solvation = -2800.450572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.33519 -37.71164 -35.24708 -33.20228 -31.16065 -30.06729 -29.35551 -28.02984 -27.80528 -24.47550 -22.63136 -21.28058 -21.03153 -20.25430 -19.69325 -17.23175 -16.67413 -16.25616 -15.47156 -15.12779 -14.64659 -13.87223 -13.73169 -13.33730 -13.28962 -12.73869 -12.44412 -12.41191 -12.25831 -12.03523 -11.95540 -11.56739 -11.43252 -11.23177 -11.04520 -10.98482 -10.84832 -10.77884 -10.49798 -10.41380 -9.67124 -9.30654 -9.21913 -8.62943 -8.46159 -7.49081 -6.62989 -6.38356 -4.03476 2.93164 3.09994 3.14319 3.17660 3.36151 3.97291 4.05901 4.47865 4.64878 4.69166 4.77335 4.82176 5.09949 5.36724 5.38863 5.49711 5.62924 5.76974 5.79798 5.83199 5.86607 5.94246 6.01866 6.14702 6.25752 6.30539 6.32610 6.50941 6.77946 6.87977 7.06190 7.19796 7.24744 7.32210 7.60117 7.66686 7.80207 8.15069 8.34227 8.49539 8.68341 8.80568 9.06431 9.15460 10.38493 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.004009 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.830031 B = 6983.066503 C = 7171.897927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 H 0.068 0.932 4 N -0.751 5.751 5 C 0.096 3.904 6 C -0.164 4.164 7 C -0.121 4.121 8 C 0.075 3.925 9 C -0.469 4.469 10 H 0.071 0.929 11 C 0.075 3.925 12 N -0.810 5.810 13 Si 0.903 3.097 14 H -0.281 1.281 15 H -0.268 1.268 16 H -0.266 1.266 17 C -0.189 4.189 18 C -0.161 4.161 19 C 0.071 3.929 20 H 0.082 0.918 21 C -0.133 4.133 22 C -0.131 4.131 23 C 0.043 3.957 24 N -0.676 5.676 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.384 0.616 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.276 0.724 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -2.744 -13.423 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.039 3.961 3 H 0.086 0.914 4 N -0.386 5.386 5 C -0.001 4.001 6 C -0.186 4.186 7 C -0.141 4.141 8 C 0.072 3.928 9 C -0.500 4.500 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.437 5.437 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.193 1.193 16 H -0.191 1.191 17 C -0.209 4.209 18 C -0.183 4.183 19 C -0.039 4.039 20 H 0.100 0.900 21 C -0.172 4.172 22 C -0.169 4.169 23 C -0.086 4.086 24 N -0.307 5.307 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.217 0.783 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.024 -3.275 -13.805 14.331 hybrid contribution 0.437 0.692 1.411 1.631 sum -1.587 -2.583 -12.393 12.759 Atomic orbital electron populations 1.22310 0.96801 1.02004 1.01467 1.21083 0.93280 0.96495 0.85288 0.91442 1.43801 1.77069 1.11027 1.06738 1.17320 1.05241 0.91828 0.85710 1.20038 1.07367 0.97865 0.93282 1.20917 1.02532 0.94355 0.96312 1.17480 0.91653 0.91570 0.92087 1.19337 1.19209 1.11596 0.99834 0.91036 1.25781 0.93737 0.94087 1.00397 1.69835 1.11097 1.27587 1.35188 0.86462 0.78676 0.79727 0.82298 1.20584 1.19292 1.19095 1.20560 1.09731 0.97809 0.92797 1.19865 1.08267 0.92845 0.97330 1.22525 0.94139 0.98871 0.88368 0.89952 1.22793 0.95338 1.02997 0.96034 1.22714 0.98088 0.99840 0.96277 1.22845 0.89922 0.96999 0.98856 1.62146 1.17109 1.30515 1.20968 0.92704 0.91951 0.92749 0.78317 0.89566 0.86391 0.91291 0.89229 0.89563 0.90758 0.90931 0.90990 0.91052 0.90563 0.93980 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.23 37.16 0.34 -1.90 16 2 C 0.15 2.08 1.60 -67.93 -0.11 1.97 16 3 H 0.07 1.06 6.45 -51.93 -0.33 0.72 16 4 N -0.75 -12.61 4.85 -52.04 -0.25 -12.86 16 5 C 0.10 2.05 6.65 -83.69 -0.56 1.49 16 6 C -0.16 -3.80 9.82 -39.77 -0.39 -4.19 16 7 C -0.12 -3.18 8.63 -39.26 -0.34 -3.51 16 8 C 0.08 2.03 5.57 -106.80 -0.59 1.44 16 9 C -0.47 -12.80 9.03 -37.88 -0.34 -13.14 16 10 H 0.07 1.89 7.90 -52.48 -0.41 1.47 16 11 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 12 N -0.81 -21.58 10.96 55.54 0.61 -20.97 16 13 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 18 C -0.16 -3.59 8.74 -39.77 -0.35 -3.94 16 19 C 0.07 0.86 3.10 -66.72 -0.21 0.65 16 20 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.13 -1.59 6.12 -24.91 -0.15 -1.74 16 22 C -0.13 -1.32 7.08 -24.59 -0.17 -1.49 16 23 C 0.04 0.43 7.57 -2.30 -0.02 0.41 16 24 N -0.68 -7.54 7.23 -103.81 -0.75 -8.29 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 27 H 0.05 0.62 6.69 -51.93 -0.35 0.27 16 28 H 0.38 5.93 8.60 -40.82 -0.35 5.58 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.12 3.21 6.19 -52.49 -0.32 2.89 16 31 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 32 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 33 H 0.09 1.73 6.04 -52.49 -0.32 1.41 16 34 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.34 3.59 6.74 -39.29 -0.26 3.33 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -27.62 317.50 -10.10 -37.72 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.10 Total: 12.48 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -3.36 Total: -27.17 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.39 Total: -42.12 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.62 -10.10 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.406 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds