Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 N 1.46494 * 109.47016 * 120.00449 * 2 1 3 5 5 C 1.38863 * 119.99719 * 274.99586 * 4 2 1 6 6 C 1.39568 * 119.84059 * 180.02562 * 5 4 2 7 7 C 1.36341 * 120.16110 * 180.02562 * 6 5 4 8 8 C 1.40885 * 119.83419 * 359.97438 * 7 6 5 9 9 C 1.41130 * 120.15447 * 180.02562 * 8 7 6 10 10 H 1.08009 * 120.00098 * 205.46003 * 9 8 7 11 11 C 1.39863 * 120.00332 * 25.45533 * 9 8 7 12 12 N 1.30904 * 120.00075 * 16.95350 * 11 9 8 13 13 Si 1.86800 * 120.00244 * 196.95126 * 11 9 8 14 14 H 1.48504 * 109.47152 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.47258 * 300.00188 * 13 11 9 16 16 H 1.48503 * 109.47285 * 60.00410 * 13 11 9 17 17 C 1.40884 * 119.68855 * 0.27534 * 8 7 6 18 18 C 1.36341 * 119.83730 * 359.44243 * 17 8 7 19 19 C 1.53008 * 109.47065 * 240.00144 * 2 1 3 20 20 H 1.08998 * 109.87686 * 300.42792 * 19 2 1 21 21 C 1.54312 * 109.88699 * 179.22220 * 19 2 1 22 22 C 1.55148 * 103.01880 * 218.30873 * 21 19 2 23 23 C 1.54909 * 101.65133 * 35.65598 * 22 21 19 24 24 N 1.47450 * 109.88891 * 61.45285 * 19 2 1 25 25 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47096 * 299.99571 * 1 2 3 27 27 H 1.09003 * 109.47370 * 59.99914 * 1 2 3 28 28 H 0.96996 * 120.00458 * 95.00417 * 4 2 1 29 29 H 1.07998 * 119.91965 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.08368 * 179.97438 * 7 6 5 31 31 H 0.96991 * 120.00583 * 180.02562 * 12 11 9 32 32 H 1.08007 * 120.07752 * 179.70544 * 17 8 7 33 33 H 1.08000 * 119.91749 * 180.27494 * 18 17 8 34 34 H 1.08998 * 110.71218 * 336.69534 * 21 19 2 35 35 H 1.09001 * 110.70418 * 99.93311 * 21 19 2 36 36 H 1.08997 * 110.99237 * 277.56527 * 22 21 19 37 37 H 1.08998 * 110.99087 * 153.74616 * 22 21 19 38 38 H 1.08999 * 110.37380 * 204.09924 * 23 22 21 39 39 H 1.08999 * 110.37211 * 81.75812 * 23 22 21 40 40 H 1.00909 * 110.99648 * 356.14904 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1509 0.0020 2.3922 6 6 2.6170 -0.6591 3.5296 7 6 2.7492 0.0146 4.7076 8 6 2.4147 1.3815 4.7747 9 6 2.5495 2.0855 5.9904 10 1 1.9447 2.9605 6.1777 11 6 3.4663 1.6501 6.9528 12 7 4.4195 0.8172 6.6192 13 14 3.3306 2.2571 8.7142 14 1 4.4134 1.6525 9.5310 15 1 3.4594 3.7363 8.7393 16 1 2.0114 1.8656 9.2725 17 6 1.9399 2.0410 3.6238 18 6 1.8181 1.3561 2.4512 19 6 2.0400 -0.7213 -1.2493 20 1 1.6741 -1.7479 -1.2599 21 6 3.5829 -0.7098 -1.2689 22 6 3.9118 -0.4957 -2.7699 23 6 2.7685 0.4531 -3.2085 24 7 1.5825 -0.0133 -2.4591 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1525 29 1 2.8726 -1.7070 3.4768 30 1 3.1096 -0.4983 5.5870 31 1 5.0550 0.5149 7.2866 32 1 1.6771 3.0876 3.6693 33 1 1.4585 1.8615 1.5671 34 1 3.9700 0.1133 -0.6683 35 1 3.9799 -1.6630 -0.9197 36 1 3.8693 -1.4373 -3.3172 37 1 4.8840 -0.0183 -2.8924 38 1 2.5965 0.3695 -4.2815 39 1 3.0060 1.4826 -2.9405 40 1 0.9792 0.7593 -2.2196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = 1.192054 kcal Electronic energy + Delta-G solvation = -19211.397115 eV Core-core repulsion = 16410.231319 eV Total energy + Delta-G solvation = -2801.165796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50691 -39.31600 -36.74982 -34.95110 -32.58406 -31.31170 -31.01665 -29.69284 -28.80498 -26.26516 -23.96575 -22.89040 -21.97730 -21.84420 -20.98993 -19.12537 -17.98325 -17.56623 -16.87666 -16.62487 -15.96090 -15.57018 -15.04356 -14.71648 -14.39872 -14.20022 -14.03131 -13.87080 -13.66100 -13.38353 -13.17373 -13.01662 -12.89134 -12.73077 -12.57365 -12.37839 -12.09425 -12.01866 -11.72186 -11.54284 -11.53235 -11.18008 -11.05057 -10.31025 -9.43089 -9.40196 -8.54150 -8.15346 -6.01122 1.10816 1.19208 1.39730 1.50536 1.59815 2.27279 2.75735 2.85339 3.41647 3.66920 3.80148 3.83929 3.86760 4.21640 4.26813 4.42543 4.45350 4.51111 4.56539 4.66493 4.80468 4.90302 4.95569 5.01103 5.04437 5.06978 5.17390 5.18376 5.29774 5.33293 5.39698 5.43943 5.73774 5.77494 5.89557 5.93848 6.18325 6.38543 6.41912 6.68095 6.88482 7.08582 7.13786 7.30984 8.48756 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.004009 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.830031 B = 6983.066503 C = 7171.897927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.056 0.944 4 N -0.741 5.741 5 C 0.121 3.879 6 C -0.175 4.175 7 C -0.140 4.140 8 C 0.035 3.965 9 C -0.509 4.509 10 H 0.066 0.934 11 C 0.033 3.967 12 N -0.843 5.843 13 Si 0.976 3.024 14 H -0.270 1.270 15 H -0.263 1.263 16 H -0.263 1.263 17 C -0.198 4.198 18 C -0.166 4.166 19 C 0.081 3.919 20 H 0.086 0.914 21 C -0.136 4.136 22 C -0.126 4.126 23 C 0.041 3.959 24 N -0.676 5.676 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.394 0.606 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.282 0.718 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -3.181 -15.192 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.074 0.926 4 N -0.375 5.375 5 C 0.021 3.979 6 C -0.197 4.197 7 C -0.160 4.160 8 C 0.033 3.967 9 C -0.540 4.540 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.471 5.471 13 Si 0.798 3.202 14 H -0.194 1.194 15 H -0.187 1.187 16 H -0.188 1.188 17 C -0.218 4.218 18 C -0.189 4.189 19 C -0.029 4.029 20 H 0.104 0.896 21 C -0.174 4.174 22 C -0.164 4.164 23 C -0.088 4.088 24 N -0.308 5.308 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.229 0.771 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.425 -3.728 -15.630 16.250 hybrid contribution 0.521 0.774 1.722 1.959 sum -1.904 -2.954 -13.908 14.345 Atomic orbital electron populations 1.22236 0.95766 1.02335 1.01636 1.21235 0.93893 0.95906 0.85007 0.92595 1.43851 1.76082 1.11474 1.06075 1.17380 1.02189 0.91617 0.86704 1.20234 1.07562 0.98934 0.93006 1.20852 1.03798 0.94402 0.96925 1.17792 0.93540 0.92339 0.93072 1.19572 1.20579 1.12471 1.01383 0.91544 1.26586 0.92817 0.94151 1.04345 1.69901 1.11772 1.28823 1.36637 0.85355 0.78838 0.79295 0.76754 1.19419 1.18703 1.18780 1.20752 1.09567 0.98247 0.93245 1.20085 1.08082 0.93348 0.97358 1.22401 0.94117 0.98786 0.87600 0.89583 1.22777 0.95194 1.02236 0.97237 1.22714 0.98605 1.00389 0.94710 1.22937 0.89389 0.96982 0.99515 1.62202 1.17592 1.30863 1.20128 0.92283 0.94079 0.90316 0.77145 0.87477 0.88304 0.90777 0.88906 0.87064 0.92952 0.90672 0.90161 0.90221 0.89110 0.93897 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.23 71.98 0.66 -3.25 16 2 C 0.15 3.82 1.60 44.99 0.07 3.89 16 3 H 0.06 1.63 6.45 -2.39 -0.02 1.61 16 4 N -0.74 -23.42 4.85 -318.54 -1.54 -24.96 16 5 C 0.12 5.04 6.65 38.67 0.26 5.30 16 6 C -0.18 -8.14 9.82 22.15 0.22 -7.92 16 7 C -0.14 -7.56 8.63 22.48 0.19 -7.36 16 8 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 9 C -0.51 -28.92 9.03 23.37 0.21 -28.71 16 10 H 0.07 3.67 7.90 -2.91 -0.02 3.64 16 11 C 0.03 1.74 5.15 85.22 0.44 2.18 16 12 N -0.84 -46.36 10.96 21.82 0.24 -46.12 16 13 Si 0.98 40.44 29.59 68.60 2.03 42.47 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 17 C -0.20 -10.03 9.74 22.48 0.22 -9.81 16 18 C -0.17 -7.34 8.74 22.15 0.19 -7.14 16 19 C 0.08 1.75 3.10 45.26 0.14 1.89 16 20 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 21 C -0.14 -2.95 6.12 31.78 0.19 -2.76 16 22 C -0.13 -2.19 7.08 31.98 0.23 -1.97 16 23 C 0.04 0.69 7.57 86.77 0.66 1.35 16 24 N -0.68 -13.00 7.23 -482.35 -3.49 -16.49 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.18 7.66 -2.39 -0.02 1.16 16 27 H 0.08 1.54 6.69 -2.39 -0.02 1.52 16 28 H 0.39 11.23 8.60 -92.71 -0.80 10.43 16 29 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.10 5.64 6.19 -2.91 -0.02 5.62 16 31 H 0.28 14.15 8.30 -92.72 -0.77 13.38 16 32 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.11 4.29 6.04 -2.91 -0.02 4.27 16 34 H 0.05 1.37 7.85 -2.39 -0.02 1.36 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.34 6.19 6.74 -89.69 -0.60 5.59 16 Total: -1.00 -60.89 317.50 0.44 -60.44 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.36 Total: 37.10 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.57 Total: -52.45 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -4.79 Total: -87.57 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -60.89 0.44 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.635 kcal (2) G-P(sol) polarization free energy of solvation -60.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds