Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47429 * 2 1 4 4 N 1.46500 * 109.47075 * 239.99713 * 2 1 3 5 5 C 1.38859 * 119.99428 * 85.00225 * 4 2 1 6 6 C 1.39570 * 119.83794 * 180.02562 * 5 4 2 7 7 C 1.36338 * 120.16116 * 179.72253 * 6 5 4 8 8 C 1.40892 * 119.83616 * 0.25011 * 7 6 5 9 9 C 1.41133 * 120.15303 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00384 * 24.61077 * 9 8 7 11 11 C 1.39867 * 119.99979 * 204.60256 * 9 8 7 12 12 N 1.30909 * 119.99968 * 17.95305 * 11 9 8 13 13 Si 1.86802 * 120.00291 * 197.95727 * 11 9 8 14 14 H 1.48502 * 109.47055 * 89.99916 * 13 11 9 15 15 H 1.48496 * 109.46947 * 209.99963 * 13 11 9 16 16 H 1.48495 * 109.46789 * 329.99867 * 13 11 9 17 17 C 1.40887 * 119.68645 * 0.02562 * 8 7 6 18 18 C 1.36339 * 119.83562 * 0.02562 * 17 8 7 19 19 C 1.53001 * 109.47222 * 119.99996 * 2 1 3 20 20 H 1.09000 * 110.33456 * 60.79579 * 19 2 1 21 21 C 1.54904 * 110.37640 * 183.17122 * 19 2 1 22 22 C 1.55139 * 101.65397 * 155.89712 * 21 19 2 23 23 C 1.54309 * 103.01959 * 324.34824 * 22 21 19 24 24 N 1.47443 * 107.23816 * 22.28514 * 23 22 21 25 25 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47026 * 300.00398 * 1 2 3 27 27 H 1.08998 * 109.47072 * 59.99825 * 1 2 3 28 28 H 0.96994 * 120.00315 * 265.00703 * 4 2 1 29 29 H 1.07997 * 119.91913 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.08293 * 180.27272 * 7 6 5 31 31 H 0.97000 * 120.00168 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.07689 * 180.02562 * 17 8 7 33 33 H 1.08003 * 119.91314 * 180.02562 * 18 17 8 34 34 H 1.08998 * 110.98768 * 273.99465 * 21 19 2 35 35 H 1.09004 * 110.98952 * 37.80780 * 21 19 2 36 36 H 1.08994 * 110.70360 * 205.96241 * 22 21 19 37 37 H 1.09006 * 110.70017 * 82.73271 * 22 21 19 38 38 H 1.09002 * 109.89314 * 262.87560 * 23 22 21 39 39 H 1.09006 * 109.88874 * 141.69074 * 23 22 21 40 40 H 1.00899 * 111.00610 * 123.25567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1509 0.0021 -2.3922 6 6 2.6159 -0.6592 -3.5299 7 6 2.7433 0.0132 -4.7091 8 6 2.4092 1.3802 -4.7761 9 6 2.5380 2.0827 -5.9934 10 1 2.4992 1.5491 -6.9315 11 6 2.7156 3.4700 -5.9849 12 7 3.1107 4.0726 -4.8919 13 14 2.3891 4.4631 -7.5330 14 1 0.9684 4.8947 -7.5537 15 1 3.2699 5.6585 -7.5492 16 1 2.6695 3.6254 -8.7266 17 6 1.9459 2.0427 -3.6222 18 6 1.8246 1.3578 -2.4496 19 6 2.0400 -0.7212 1.2492 20 1 1.6961 -1.7555 1.2564 21 6 3.5868 -0.6643 1.3112 22 6 3.8461 -0.8383 2.8308 23 6 2.6646 -0.0823 3.4740 24 7 1.5871 -0.0199 2.4695 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2489 -1.6318 -1.1526 29 1 2.8716 -1.7072 -3.4771 30 1 3.0991 -0.5009 -5.5898 31 1 3.2336 5.0347 -4.8859 32 1 1.6876 3.0904 -3.6665 33 1 1.4692 1.8643 -1.5643 34 1 4.0306 -1.4818 0.7431 35 1 3.9564 0.2991 0.9599 36 1 4.7951 -0.3832 3.1144 37 1 3.8253 -1.8926 3.1070 38 1 2.9747 0.9260 3.7483 39 1 2.3176 -0.6190 4.3571 40 1 0.7360 -0.4278 2.8262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400442873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 18.064381 kcal Electronic energy + Delta-G solvation = -19194.771600 eV Core-core repulsion = 16394.337443 eV Total energy + Delta-G solvation = -2800.434157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.12535 -37.68549 -35.24934 -33.19424 -30.92852 -30.11103 -29.41229 -28.01346 -27.72663 -24.42183 -22.55373 -21.31353 -21.01444 -20.22592 -19.28123 -17.16788 -17.05355 -16.06070 -15.59191 -14.92685 -14.59679 -13.82649 -13.63511 -13.37030 -13.05966 -12.77933 -12.57846 -12.39262 -12.11694 -11.92347 -11.82735 -11.50166 -11.46867 -11.28337 -11.00282 -10.90428 -10.72115 -10.68459 -10.43357 -10.36687 -9.63717 -9.22291 -9.14064 -8.57042 -8.44331 -7.42709 -6.59024 -6.31664 -3.97913 2.96166 3.15829 3.18707 3.21788 3.40965 3.89965 4.09597 4.55344 4.64401 4.70055 4.82099 4.93408 5.10723 5.30546 5.38906 5.56834 5.71371 5.74629 5.85917 5.88248 5.97241 6.00350 6.15413 6.23685 6.31043 6.33549 6.48823 6.63056 6.79460 7.00332 7.03721 7.25659 7.28133 7.41314 7.63279 7.75367 7.91095 8.21207 8.35985 8.56676 8.77468 8.86978 9.11541 9.21412 10.42594 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.004151 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.400415 B = 6744.231402 C = 6919.180031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.079 0.921 4 N -0.756 5.756 5 C 0.098 3.902 6 C -0.161 4.161 7 C -0.187 4.187 8 C 0.073 3.927 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.808 5.808 13 Si 0.902 3.098 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.265 1.265 17 C -0.124 4.124 18 C -0.163 4.163 19 C 0.073 3.927 20 H 0.049 0.951 21 C -0.118 4.118 22 C -0.146 4.146 23 C 0.049 3.951 24 N -0.676 5.676 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.380 0.620 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.275 0.725 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -7.094 13.348 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.097 0.903 4 N -0.390 5.390 5 C 0.001 3.999 6 C -0.184 4.184 7 C -0.208 4.208 8 C 0.070 3.930 9 C -0.500 4.500 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.436 5.436 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.144 4.144 18 C -0.185 4.185 19 C -0.038 4.038 20 H 0.067 0.933 21 C -0.156 4.156 22 C -0.184 4.184 23 C -0.080 4.080 24 N -0.306 5.306 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.212 0.788 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.382 -6.034 13.297 14.668 hybrid contribution -0.056 -0.785 -0.337 0.856 sum -1.438 -6.819 12.961 14.715 Atomic orbital electron populations 1.22255 0.97147 1.00936 1.01901 1.20438 0.92760 0.96868 0.83189 0.90331 1.43879 1.77246 1.10824 1.07085 1.17311 1.05432 0.91704 0.85426 1.19792 1.07991 0.97458 0.93114 1.20527 1.08270 0.96037 0.95920 1.17487 0.91083 0.90975 0.93410 1.19368 1.45254 0.91691 0.93647 0.91024 1.25781 0.92598 0.98415 0.97191 1.69861 1.34113 1.10952 1.28639 0.86422 0.79020 0.79198 0.82628 1.19575 1.20618 1.18909 1.20945 1.01313 0.99887 0.92231 1.20141 1.07913 0.92506 0.97967 1.22594 0.94833 0.95395 0.90935 0.93320 1.22672 0.94777 1.03201 0.94977 1.22825 0.99069 1.00134 0.96408 1.22573 0.91373 1.00343 0.93736 1.61591 1.05772 1.58418 1.04828 0.93779 0.92273 0.92172 0.78818 0.89771 0.89204 0.91378 0.86474 0.89175 0.90901 0.90224 0.90847 0.91843 0.90766 0.93377 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.28 37.16 0.34 -2.01 16 2 C 0.17 2.66 2.01 -67.93 -0.14 2.52 16 3 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 4 N -0.76 -13.00 4.93 -52.03 -0.26 -13.25 16 5 C 0.10 2.14 6.65 -83.69 -0.56 1.58 16 6 C -0.16 -3.65 9.82 -39.77 -0.39 -4.04 16 7 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 8 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 9 C -0.47 -12.94 9.03 -37.87 -0.34 -13.28 16 10 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 11 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 12 N -0.81 -21.82 10.96 55.54 0.61 -21.21 16 13 Si 0.90 19.55 29.60 -169.99 -5.03 14.52 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 17 C -0.12 -3.30 8.64 -39.26 -0.34 -3.64 16 18 C -0.16 -3.87 8.76 -39.77 -0.35 -4.22 16 19 C 0.07 0.89 2.86 -66.18 -0.19 0.70 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.12 -1.44 6.23 -24.59 -0.15 -1.59 16 22 C -0.15 -1.42 6.94 -24.91 -0.17 -1.59 16 23 C 0.05 0.47 7.58 -2.84 -0.02 0.45 16 24 N -0.68 -7.50 6.40 -103.84 -0.67 -8.17 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.77 7.69 -51.92 -0.40 0.37 16 27 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 28 H 0.38 5.86 8.60 -40.82 -0.35 5.51 16 29 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 32 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 33 H 0.09 1.99 6.07 -52.48 -0.32 1.68 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.34 3.20 8.91 -39.29 -0.35 2.85 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -28.19 320.38 -10.14 -38.32 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.25 Total: 11.87 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.37 Total: -26.91 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.31 Total: -42.63 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.19 -10.14 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.386 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds