Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47429 * 2 1 4 4 N 1.46500 * 109.47075 * 239.99713 * 2 1 3 5 5 C 1.38859 * 119.99428 * 85.00225 * 4 2 1 6 6 C 1.39570 * 119.83794 * 180.02562 * 5 4 2 7 7 C 1.36338 * 120.16116 * 179.72253 * 6 5 4 8 8 C 1.40892 * 119.83616 * 0.25011 * 7 6 5 9 9 C 1.41133 * 120.15303 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00384 * 24.61077 * 9 8 7 11 11 C 1.39867 * 119.99979 * 204.60256 * 9 8 7 12 12 N 1.30909 * 119.99968 * 17.95305 * 11 9 8 13 13 Si 1.86802 * 120.00291 * 197.95727 * 11 9 8 14 14 H 1.48502 * 109.47055 * 89.99916 * 13 11 9 15 15 H 1.48496 * 109.46947 * 209.99963 * 13 11 9 16 16 H 1.48495 * 109.46789 * 329.99867 * 13 11 9 17 17 C 1.40887 * 119.68645 * 0.02562 * 8 7 6 18 18 C 1.36339 * 119.83562 * 0.02562 * 17 8 7 19 19 C 1.53001 * 109.47222 * 119.99996 * 2 1 3 20 20 H 1.09000 * 110.33456 * 60.79579 * 19 2 1 21 21 C 1.54904 * 110.37640 * 183.17122 * 19 2 1 22 22 C 1.55139 * 101.65397 * 155.89712 * 21 19 2 23 23 C 1.54309 * 103.01959 * 324.34824 * 22 21 19 24 24 N 1.47443 * 107.23816 * 22.28514 * 23 22 21 25 25 H 1.08999 * 109.47429 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47026 * 300.00398 * 1 2 3 27 27 H 1.08998 * 109.47072 * 59.99825 * 1 2 3 28 28 H 0.96994 * 120.00315 * 265.00703 * 4 2 1 29 29 H 1.07997 * 119.91913 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.08293 * 180.27272 * 7 6 5 31 31 H 0.97000 * 120.00168 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.07689 * 180.02562 * 17 8 7 33 33 H 1.08003 * 119.91314 * 180.02562 * 18 17 8 34 34 H 1.08998 * 110.98768 * 273.99465 * 21 19 2 35 35 H 1.09004 * 110.98952 * 37.80780 * 21 19 2 36 36 H 1.08994 * 110.70360 * 205.96241 * 22 21 19 37 37 H 1.09006 * 110.70017 * 82.73271 * 22 21 19 38 38 H 1.09002 * 109.89314 * 262.87560 * 23 22 21 39 39 H 1.09006 * 109.88874 * 141.69074 * 23 22 21 40 40 H 1.00899 * 111.00610 * 123.25567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1509 0.0021 -2.3922 6 6 2.6159 -0.6592 -3.5299 7 6 2.7433 0.0132 -4.7091 8 6 2.4092 1.3802 -4.7761 9 6 2.5380 2.0827 -5.9934 10 1 2.4992 1.5491 -6.9315 11 6 2.7156 3.4700 -5.9849 12 7 3.1107 4.0726 -4.8919 13 14 2.3891 4.4631 -7.5330 14 1 0.9684 4.8947 -7.5537 15 1 3.2699 5.6585 -7.5492 16 1 2.6695 3.6254 -8.7266 17 6 1.9459 2.0427 -3.6222 18 6 1.8246 1.3578 -2.4496 19 6 2.0400 -0.7212 1.2492 20 1 1.6961 -1.7555 1.2564 21 6 3.5868 -0.6643 1.3112 22 6 3.8461 -0.8383 2.8308 23 6 2.6646 -0.0823 3.4740 24 7 1.5871 -0.0199 2.4695 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2489 -1.6318 -1.1526 29 1 2.8716 -1.7072 -3.4771 30 1 3.0991 -0.5009 -5.5898 31 1 3.2336 5.0347 -4.8859 32 1 1.6876 3.0904 -3.6665 33 1 1.4692 1.8643 -1.5643 34 1 4.0306 -1.4818 0.7431 35 1 3.9564 0.2991 0.9599 36 1 4.7951 -0.3832 3.1144 37 1 3.8253 -1.8926 3.1070 38 1 2.9747 0.9260 3.7483 39 1 2.3176 -0.6190 4.3571 40 1 0.7360 -0.4278 2.8262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 1.028846 kcal Electronic energy + Delta-G solvation = -19195.510317 eV Core-core repulsion = 16394.337443 eV Total energy + Delta-G solvation = -2801.172873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33108 -39.27080 -36.78859 -34.99169 -32.37349 -31.32991 -31.12940 -29.66790 -28.80563 -26.24578 -23.88130 -23.05330 -21.93569 -21.79733 -20.63209 -19.13549 -18.21842 -17.44121 -16.86101 -16.73390 -15.89558 -15.48535 -15.00765 -14.60316 -14.35370 -14.28989 -14.07611 -13.68341 -13.59239 -13.52512 -13.18533 -13.06821 -12.76325 -12.74662 -12.38398 -12.33144 -12.10534 -12.07913 -11.65709 -11.55583 -11.51363 -11.12344 -11.00983 -10.28343 -9.38364 -9.36029 -8.53308 -8.12032 -5.98667 1.12931 1.21076 1.40248 1.53001 1.60581 2.28236 2.73000 2.86790 3.48269 3.66287 3.79844 3.88125 4.11594 4.18449 4.31795 4.45838 4.46541 4.53469 4.61381 4.74429 4.83291 4.91520 4.97023 5.01801 5.05682 5.13083 5.14852 5.21042 5.31073 5.35230 5.43115 5.48570 5.71715 5.83873 5.94407 5.99984 6.21319 6.41789 6.52821 6.70277 6.91014 7.10412 7.18872 7.37446 8.50087 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034247 B = 0.004151 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.400415 B = 6744.231402 C = 6919.180031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.742 5.742 5 C 0.121 3.879 6 C -0.167 4.167 7 C -0.195 4.195 8 C 0.034 3.966 9 C -0.507 4.507 10 H 0.067 0.933 11 C 0.032 3.968 12 N -0.843 5.843 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.271 1.271 16 H -0.260 1.260 17 C -0.144 4.144 18 C -0.173 4.173 19 C 0.083 3.917 20 H 0.068 0.932 21 C -0.123 4.123 22 C -0.139 4.139 23 C 0.049 3.951 24 N -0.688 5.688 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.395 0.605 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.281 0.719 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -8.744 14.898 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.066 3.934 3 H 0.067 0.933 4 N -0.376 5.376 5 C 0.021 3.979 6 C -0.189 4.189 7 C -0.215 4.215 8 C 0.031 3.969 9 C -0.539 4.539 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.472 5.472 13 Si 0.798 3.202 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.184 1.184 17 C -0.164 4.164 18 C -0.196 4.196 19 C -0.027 4.027 20 H 0.086 0.914 21 C -0.162 4.162 22 C -0.177 4.177 23 C -0.080 4.080 24 N -0.320 5.320 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.229 0.771 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.682 -7.722 14.898 16.864 hybrid contribution 0.030 -0.387 -0.635 0.745 sum -1.652 -8.110 14.262 16.490 Atomic orbital electron populations 1.22158 0.96166 1.01756 1.01347 1.20532 0.93371 0.95657 0.83830 0.93308 1.43866 1.76198 1.11387 1.06177 1.17380 1.02511 0.91062 0.86900 1.20094 1.07439 0.99039 0.92307 1.20749 1.07996 0.95470 0.97301 1.17802 0.92826 0.92364 0.93901 1.19600 1.47557 0.93044 0.93675 0.91447 1.26609 0.91738 0.98993 1.00638 1.69933 1.34990 1.11477 1.30780 0.85298 0.79012 0.77586 0.78303 1.19008 1.19548 1.18400 1.20853 1.02856 0.99258 0.93429 1.20234 1.08333 0.93614 0.97379 1.22397 0.94684 0.95750 0.89900 0.91441 1.22656 0.94760 1.01717 0.97024 1.22805 0.99376 1.01280 0.94223 1.22604 0.90920 1.00391 0.94104 1.61462 1.06843 1.58753 1.04901 0.92181 0.90641 0.94948 0.77109 0.86341 0.88564 0.90846 0.88635 0.88264 0.90580 0.93128 0.90397 0.90111 0.91510 0.90973 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 9.28 71.98 0.67 -3.54 16 2 C 0.17 5.00 2.01 44.99 0.09 5.09 16 3 H 0.05 1.74 6.43 -2.39 -0.02 1.72 16 4 N -0.74 -24.09 4.93 -318.54 -1.57 -25.67 16 5 C 0.12 5.19 6.65 38.67 0.26 5.45 16 6 C -0.17 -7.35 9.82 22.15 0.22 -7.13 16 7 C -0.20 -9.92 9.74 22.48 0.22 -9.70 16 8 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 9 C -0.51 -29.18 9.03 23.38 0.21 -28.97 16 10 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 11 C 0.03 1.72 5.13 85.22 0.44 2.16 16 12 N -0.84 -47.34 10.96 21.82 0.24 -47.10 16 13 Si 0.98 41.06 29.60 68.60 2.03 43.09 16 14 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 15 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 C -0.14 -8.01 8.64 22.48 0.19 -7.82 16 18 C -0.17 -8.41 8.76 22.15 0.19 -8.22 16 19 C 0.08 1.81 2.86 45.38 0.13 1.94 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 21 C -0.12 -2.76 6.23 31.98 0.20 -2.56 16 22 C -0.14 -2.30 6.94 31.77 0.22 -2.08 16 23 C 0.05 0.80 7.58 86.64 0.66 1.45 16 24 N -0.69 -13.41 6.40 -482.45 -3.09 -16.50 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.80 7.69 -2.38 -0.02 1.78 16 27 H 0.03 1.05 7.70 -2.39 -0.02 1.03 16 28 H 0.39 10.91 8.60 -92.71 -0.80 10.11 16 29 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.28 14.39 8.30 -92.71 -0.77 13.62 16 32 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 33 H 0.10 4.53 6.07 -2.91 -0.02 4.51 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.42 8.06 -2.38 -0.02 1.40 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.35 5.41 8.91 -89.69 -0.80 4.61 16 Total: -1.00 -63.36 320.38 0.63 -62.73 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.56 Total: 35.56 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 3.58 Total: -52.12 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -4.42 Total: -89.26 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -63.36 0.63 -62.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.763 kcal (2) G-P(sol) polarization free energy of solvation -63.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds