Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47206 * 2 1 4 4 N 1.46505 * 109.46910 * 119.99751 * 2 1 3 5 5 C 1.39690 * 119.99772 * 274.99755 * 4 2 1 6 6 C 1.39342 * 119.94889 * 359.97438 * 5 4 2 7 7 C 1.38480 * 120.41787 * 180.02562 * 6 5 4 8 8 C 1.37686 * 120.32851 * 0.02562 * 7 6 5 9 9 C 1.40748 * 119.89390 * 0.02562 * 8 7 6 10 10 C 1.41409 * 120.21058 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99649 * 335.30300 * 10 9 8 12 12 C 1.39932 * 119.99843 * 155.29474 * 10 9 8 13 13 N 1.30827 * 120.00019 * 342.24596 * 12 10 9 14 14 Si 1.86801 * 119.99634 * 162.24276 * 12 10 9 15 15 H 1.48502 * 109.47234 * 90.00075 * 14 12 10 16 16 H 1.48492 * 109.47082 * 210.00332 * 14 12 10 17 17 H 1.48504 * 109.47064 * 330.00354 * 14 12 10 18 18 C 1.38269 * 119.95098 * 180.02562 * 5 4 2 19 19 C 1.52999 * 109.47349 * 239.99420 * 2 1 3 20 20 H 1.08999 * 109.91009 * 303.90118 * 19 2 1 21 21 C 1.53999 * 109.91578 * 65.00305 * 19 2 1 22 22 C 1.54594 * 105.13933 * 120.57847 * 21 19 2 23 23 C 1.54933 * 102.92406 * 21.95733 * 22 21 19 24 24 N 1.47903 * 109.91922 * 182.58821 * 19 2 1 25 25 H 1.08999 * 109.47608 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47353 * 300.00760 * 1 2 3 27 27 H 1.09004 * 109.47136 * 60.00627 * 1 2 3 28 28 H 0.96993 * 120.00107 * 95.00222 * 4 2 1 29 29 H 1.07995 * 119.78927 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.83440 * 179.97438 * 7 6 5 31 31 H 1.07995 * 120.05686 * 179.97438 * 8 7 6 32 32 H 0.97000 * 119.99624 * 180.02562 * 13 12 10 33 33 H 1.08005 * 120.16475 * 0.25298 * 18 5 4 34 34 H 1.08993 * 110.30415 * 239.49142 * 21 19 2 35 35 H 1.08995 * 110.30663 * 1.56385 * 21 19 2 36 36 H 1.08994 * 110.72535 * 140.31552 * 22 21 19 37 37 H 1.08996 * 110.72441 * 263.42070 * 22 21 19 38 38 H 1.08997 * 110.67172 * 81.01854 * 23 22 21 39 39 H 1.09003 * 110.67115 * 203.98814 * 23 22 21 40 40 H 1.00906 * 111.00097 * 335.83648 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1516 0.0064 2.3995 6 6 1.8205 1.3585 2.4606 7 6 1.9495 2.0590 3.6482 8 6 2.4073 1.4265 4.7822 9 6 2.7467 0.0613 4.7355 10 6 3.2180 -0.5949 5.8961 11 1 3.6928 -0.0267 6.6823 12 6 3.0692 -1.9802 6.0257 13 7 2.2110 -2.6192 5.2729 14 14 4.0958 -2.9170 7.2738 15 1 3.3737 -2.9680 8.5705 16 1 4.3314 -4.2988 6.7837 17 1 5.3986 -2.2288 7.4596 18 6 2.6131 -0.6462 3.5278 19 6 2.0400 -0.7214 -1.2491 20 1 1.6248 -1.7283 -1.2918 21 6 1.6380 0.0657 -2.5103 22 6 2.9714 0.4150 -3.2103 23 6 3.9487 -0.6448 -2.6429 24 7 3.5176 -0.7817 -1.2281 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 2.2489 -1.6317 1.1528 29 1 1.4610 1.8633 1.5762 30 1 1.6905 3.1069 3.6848 31 1 2.5066 1.9771 5.7060 32 1 2.1076 -3.5794 5.3631 33 1 2.8747 -1.6930 3.4804 34 1 1.0198 -0.5527 -3.1610 35 1 1.1042 0.9751 -2.2345 36 1 2.8776 0.3136 -4.2914 37 1 3.2939 1.4220 -2.9454 38 1 3.8390 -1.5916 -3.1718 39 1 4.9777 -0.2899 -2.7015 40 1 3.9017 -0.0417 -0.6598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -2.829072 kcal Electronic energy + Delta-G solvation = -19404.491222 eV Core-core repulsion = 16603.151056 eV Total energy + Delta-G solvation = -2801.340165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43374 -39.19646 -36.61941 -35.16471 -32.61489 -31.33092 -30.89186 -28.79727 -28.40937 -27.06516 -23.82111 -23.01430 -22.40578 -21.50672 -20.81616 -19.05779 -17.88112 -17.18803 -16.67520 -16.34042 -16.07208 -15.62999 -15.24825 -14.68708 -14.64906 -14.43589 -14.02507 -13.87333 -13.82228 -13.26638 -12.97826 -12.76175 -12.63355 -12.57192 -12.46856 -12.31195 -12.07232 -11.92465 -11.89041 -11.46761 -11.33898 -11.24003 -11.05122 -10.46661 -9.52928 -9.21778 -8.59859 -7.83616 -6.29774 1.11169 1.37424 1.38827 1.51703 1.60390 2.24174 2.77174 2.84644 3.36124 3.67583 3.84128 3.90042 4.06235 4.20548 4.28892 4.45324 4.53396 4.59080 4.61939 4.76325 4.82943 4.86588 4.99951 5.01261 5.03251 5.09251 5.15350 5.21967 5.32208 5.34413 5.35930 5.51065 5.64486 5.90829 6.00703 6.14432 6.24862 6.31429 6.37606 6.61955 6.98389 7.09393 7.12274 7.30252 8.40387 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.004946 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.936113 B = 5659.632571 C = 6168.002440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.067 0.933 4 N -0.741 5.741 5 C 0.229 3.771 6 C -0.301 4.301 7 C -0.063 4.063 8 C -0.288 4.288 9 C 0.109 3.891 10 C -0.506 4.506 11 H 0.070 0.930 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.977 3.023 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.260 4.260 19 C 0.072 3.928 20 H 0.078 0.922 21 C -0.140 4.140 22 C -0.151 4.151 23 C 0.039 3.961 24 N -0.684 5.684 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.391 0.609 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.284 0.716 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 2.280 -15.640 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.085 0.915 4 N -0.371 5.371 5 C 0.127 3.873 6 C -0.324 4.324 7 C -0.082 4.082 8 C -0.309 4.309 9 C 0.107 3.893 10 C -0.536 4.536 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.184 1.184 18 C -0.284 4.284 19 C -0.038 4.038 20 H 0.096 0.904 21 C -0.180 4.180 22 C -0.191 4.191 23 C -0.090 4.090 24 N -0.312 5.312 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.224 0.776 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.542 1.450 -15.757 15.832 hybrid contribution 0.148 0.095 0.773 0.793 sum -0.394 1.545 -14.983 15.068 Atomic orbital electron populations 1.22238 0.95602 1.02080 1.02084 1.21104 0.93974 0.95913 0.84049 0.91490 1.44521 1.74423 1.11662 1.06521 1.17706 0.92613 0.91258 0.85722 1.20201 1.20268 0.93379 0.98537 1.20637 0.96753 0.98265 0.92530 1.20995 1.15521 0.96318 0.98066 1.17700 0.87317 0.91721 0.92608 1.19797 1.36601 0.93365 1.03871 0.91158 1.26688 0.94285 0.98452 0.98220 1.69929 1.27678 1.10652 1.36593 0.85288 0.79274 0.77439 0.78167 1.18690 1.19112 1.18446 1.20627 1.15846 0.99903 0.92048 1.22597 0.88502 0.99198 0.93530 0.90358 1.22837 0.98414 1.00797 0.95936 1.23082 0.95047 0.99400 1.01527 1.23192 0.98922 0.98826 0.88056 1.62759 1.06291 1.51712 1.10438 0.92847 0.93994 0.89689 0.77588 0.86985 0.86578 0.89448 0.90551 0.88586 0.89858 0.90459 0.89286 0.91584 0.90140 0.90280 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.22 71.98 0.66 -3.59 16 2 C 0.16 4.43 1.48 44.99 0.07 4.50 16 3 H 0.07 1.99 6.47 -2.38 -0.02 1.97 16 4 N -0.74 -27.80 5.04 -319.11 -1.61 -29.41 16 5 C 0.23 10.66 6.63 38.16 0.25 10.91 16 6 C -0.30 -13.29 8.86 22.59 0.20 -13.09 16 7 C -0.06 -2.90 10.01 22.20 0.22 -2.68 16 8 C -0.29 -15.13 9.79 22.75 0.22 -14.90 16 9 C 0.11 6.27 5.57 -21.31 -0.12 6.16 16 10 C -0.51 -28.99 9.05 23.46 0.21 -28.78 16 11 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 12 C 0.04 2.03 5.14 85.25 0.44 2.46 16 13 N -0.82 -45.01 10.97 21.82 0.24 -44.77 16 14 Si 0.98 40.14 29.59 68.60 2.03 42.17 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 18 C -0.26 -14.23 8.52 22.86 0.19 -14.03 16 19 C 0.07 1.70 3.02 45.06 0.14 1.84 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.14 -2.44 6.01 31.47 0.19 -2.25 16 22 C -0.15 -2.38 7.06 31.80 0.22 -2.16 16 23 C 0.04 0.74 7.55 86.65 0.65 1.39 16 24 N -0.68 -17.28 7.19 -480.20 -3.45 -20.73 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.31 7.70 -2.39 -0.02 1.29 16 27 H 0.08 1.70 6.83 -2.38 -0.02 1.69 16 28 H 0.39 15.05 8.61 -92.71 -0.80 14.25 16 29 H 0.11 4.28 6.08 -2.91 -0.02 4.26 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 33 H 0.10 5.55 6.18 -2.91 -0.02 5.53 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.29 6.76 -2.39 -0.02 1.27 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.34 9.35 8.40 -89.69 -0.75 8.59 16 Total: -1.00 -61.99 318.36 0.26 -61.73 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.51 Total: 45.24 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 3.56 Total: -54.22 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -4.82 Total: -94.91 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -61.99 0.26 -61.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.900 kcal (2) G-P(sol) polarization free energy of solvation -61.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds