Wall clock time and date at job start Mon Mar 30 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46481 * 2 1 4 4 N 1.46497 * 109.46938 * 240.00890 * 2 1 3 5 5 C 1.39689 * 120.00485 * 84.99461 * 4 2 1 6 6 C 1.39333 * 119.94833 * 0.02562 * 5 4 2 7 7 C 1.38475 * 120.42315 * 179.97438 * 6 5 4 8 8 C 1.37684 * 120.32875 * 0.02562 * 7 6 5 9 9 C 1.40758 * 119.89171 * 0.02562 * 8 7 6 10 10 C 1.41406 * 120.21015 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99716 * 24.41896 * 10 9 8 12 12 C 1.39924 * 119.99769 * 204.42316 * 10 9 8 13 13 N 1.30824 * 120.00724 * 17.87456 * 12 10 9 14 14 Si 1.86810 * 119.99691 * 197.88225 * 12 10 9 15 15 H 1.48492 * 109.47112 * 89.99701 * 14 12 10 16 16 H 1.48500 * 109.46776 * 209.99951 * 14 12 10 17 17 H 1.48493 * 109.46905 * 329.99337 * 14 12 10 18 18 C 1.38276 * 119.95336 * 179.97438 * 5 4 2 19 19 C 1.52995 * 109.47706 * 120.00663 * 2 1 3 20 20 H 1.09000 * 110.36755 * 57.34329 * 19 2 1 21 21 C 1.54386 * 110.40990 * 295.00125 * 19 2 1 22 22 C 1.54256 * 105.05971 * 217.36752 * 21 19 2 23 23 C 1.54372 * 105.06224 * 0.02562 * 22 21 19 24 24 N 1.48555 * 110.41409 * 179.82842 * 19 2 1 25 25 H 1.08994 * 109.47455 * 59.99545 * 1 2 3 26 26 H 1.08996 * 109.46753 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46913 * 299.99128 * 1 2 3 28 28 H 0.97003 * 120.00151 * 264.99675 * 4 2 1 29 29 H 1.08003 * 119.79010 * 359.70157 * 6 5 4 30 30 H 1.08000 * 119.84009 * 180.02562 * 7 6 5 31 31 H 1.08001 * 120.05710 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00903 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.16070 * 0.04527 * 18 5 4 34 34 H 1.09000 * 110.31978 * 336.26139 * 21 19 2 35 35 H 1.08994 * 110.32380 * 98.46546 * 21 19 2 36 36 H 1.08999 * 110.32310 * 118.89392 * 22 21 19 37 37 H 1.08995 * 110.32176 * 240.99982 * 22 21 19 38 38 H 1.09004 * 110.41709 * 142.62872 * 23 22 21 39 39 H 1.09003 * 110.41368 * 265.07571 * 23 22 21 40 40 H 1.00899 * 110.99808 * 277.81822 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1517 0.0065 -2.3995 6 6 1.8204 1.3585 -2.4607 7 6 1.9493 2.0590 -3.6482 8 6 2.4061 1.4264 -4.7825 9 6 2.7436 0.0606 -4.7364 10 6 3.2139 -0.5957 -5.8972 11 1 3.6853 -0.0274 -6.6853 12 6 3.0684 -1.9815 -6.0248 13 7 2.2121 -2.6216 -5.2708 14 14 4.0971 -2.9178 -7.2718 15 1 5.3645 -3.3592 -6.6363 16 1 3.3412 -4.1049 -7.7456 17 1 4.4032 -2.0334 -8.4247 18 6 2.6131 -0.6461 -3.5279 19 6 2.0402 -0.7213 1.2491 20 1 1.6468 -1.7372 1.2878 21 6 1.6432 0.0584 2.5210 22 6 2.8470 -0.0897 3.4741 23 6 3.8704 -0.9458 2.6977 24 7 3.5255 -0.7371 1.2680 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 2.2491 -1.6316 -1.1529 29 1 1.4567 1.8623 -1.5773 30 1 1.6902 3.1068 -3.6848 31 1 2.5045 1.9768 -5.7065 32 1 2.1114 -3.5824 -5.3590 33 1 2.8703 -1.6940 -3.4816 34 1 1.4750 1.1090 2.2839 35 1 0.7500 -0.3771 2.9687 36 1 3.2697 0.8882 3.7048 37 1 2.5443 -0.5963 4.3904 38 1 4.8848 -0.6013 2.8987 39 1 3.7656 -1.9977 2.9635 40 1 3.8865 -1.4856 0.6957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400442919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:08 Heat of formation + Delta-G solvation = 14.711502 kcal Electronic energy + Delta-G solvation = -19347.567788 eV Core-core repulsion = 16546.988239 eV Total energy + Delta-G solvation = -2800.579549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.07249 -37.51503 -35.10607 -33.30542 -31.17083 -30.26784 -29.35732 -27.62182 -26.90649 -25.09446 -22.67045 -21.28122 -20.97446 -19.90190 -19.44485 -17.25043 -16.71604 -16.03774 -15.30526 -14.85364 -14.43514 -14.31172 -13.98841 -13.08478 -12.99598 -12.74414 -12.49650 -12.39225 -12.13024 -12.08611 -11.70596 -11.47475 -11.41690 -11.21826 -11.03859 -10.87466 -10.80556 -10.54651 -10.43060 -10.24212 -9.52207 -9.34437 -9.18155 -8.68281 -8.51749 -7.22130 -6.66273 -6.04885 -4.23985 2.92628 3.13385 3.17349 3.31972 3.42281 4.02747 4.11976 4.32799 4.70741 4.73837 4.80443 4.96013 5.12728 5.35193 5.48727 5.52851 5.69961 5.74788 5.80634 5.82603 5.92774 5.95482 6.02548 6.10486 6.34560 6.38858 6.51235 6.70359 6.86501 6.97573 7.19762 7.22456 7.34669 7.46918 7.53125 7.90922 8.05256 8.20397 8.25696 8.57691 8.80744 8.92863 9.09305 9.21137 10.32390 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004922 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.437472 B = 5687.374044 C = 6264.983326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.080 0.920 4 N -0.751 5.751 5 C 0.223 3.777 6 C -0.296 4.296 7 C -0.067 4.067 8 C -0.259 4.259 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.079 3.921 13 N -0.795 5.795 14 Si 0.903 3.097 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.232 4.232 19 C 0.060 3.940 20 H 0.047 0.953 21 C -0.116 4.116 22 C -0.124 4.124 23 C 0.034 3.966 24 N -0.654 5.654 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.384 0.616 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.276 0.724 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 0.018 14.049 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.066 3.934 3 H 0.098 0.902 4 N -0.382 5.382 5 C 0.124 3.876 6 C -0.319 4.319 7 C -0.086 4.086 8 C -0.280 4.280 9 C 0.136 3.864 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.421 5.421 14 Si 0.728 3.272 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.256 4.256 19 C -0.051 4.051 20 H 0.065 0.935 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.096 4.096 24 N -0.283 5.283 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.216 0.784 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.577 0.671 14.145 14.173 hybrid contribution 0.188 -1.905 -0.411 1.957 sum -0.389 -1.234 13.734 13.795 Atomic orbital electron populations 1.22324 0.96940 1.01679 1.01757 1.20601 0.92143 0.97154 0.83491 0.90172 1.44361 1.75620 1.11126 1.07127 1.17591 0.94200 0.90825 0.84947 1.19904 1.20649 0.93629 0.97734 1.20279 0.98391 0.96723 0.93197 1.20845 1.13754 0.96526 0.96852 1.17310 0.86638 0.90527 0.91918 1.19552 1.34888 0.91870 1.03327 0.90678 1.25845 0.93627 0.98176 0.96154 1.69871 1.26856 1.09879 1.35445 0.86409 0.80566 0.79090 0.81158 1.19453 1.20537 1.18715 1.20704 1.13530 1.00463 0.90932 1.22767 0.88827 0.98004 0.95458 0.93492 1.22296 0.97562 1.01264 0.94344 1.22284 0.95681 1.00516 0.97748 1.22897 0.99670 0.97601 0.89382 1.63564 1.08237 1.49839 1.06647 0.91628 0.93099 0.92871 0.78359 0.89562 0.89790 0.89551 0.91344 0.86698 0.90678 0.91444 0.91108 0.91703 0.90356 0.94671 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.25 37.16 0.34 -2.09 16 2 C 0.17 2.71 1.94 -67.93 -0.13 2.58 16 3 H 0.08 1.40 6.42 -51.93 -0.33 1.07 16 4 N -0.75 -14.22 5.11 -52.22 -0.27 -14.49 16 5 C 0.22 5.24 6.63 -83.86 -0.56 4.68 16 6 C -0.30 -6.86 8.86 -39.09 -0.35 -7.21 16 7 C -0.07 -1.59 10.01 -39.70 -0.40 -1.99 16 8 C -0.26 -6.71 9.79 -38.83 -0.38 -7.09 16 9 C 0.14 3.85 5.57 -106.85 -0.60 3.26 16 10 C -0.47 -12.84 9.05 -37.75 -0.34 -13.18 16 11 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 12 C 0.08 2.04 5.14 -17.35 -0.09 1.95 16 13 N -0.79 -21.01 10.96 55.55 0.61 -20.40 16 14 Si 0.90 19.21 29.60 -169.99 -5.03 14.18 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 18 C -0.23 -6.15 8.54 -38.68 -0.33 -6.48 16 19 C 0.06 0.77 2.76 -66.07 -0.18 0.59 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 C -0.12 -1.24 5.61 -25.35 -0.14 -1.38 16 22 C -0.12 -1.20 7.00 -25.36 -0.18 -1.38 16 23 C 0.03 0.36 7.47 -2.20 -0.02 0.35 16 24 N -0.65 -8.72 7.15 -102.77 -0.73 -9.45 16 25 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.63 7.43 -51.93 -0.39 0.25 16 28 H 0.38 6.98 8.61 -40.82 -0.35 6.63 16 29 H 0.09 1.82 6.07 -52.48 -0.32 1.50 16 30 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 34 H 0.07 0.83 7.81 -51.93 -0.41 0.42 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.34 4.55 8.92 -39.29 -0.35 4.20 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -28.56 320.15 -10.16 -38.72 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -6.22 Total: 14.00 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -3.34 Total: -27.39 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.39 Total: -44.34 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.56 -10.16 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.432 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds