Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46481 * 2 1 4 4 N 1.46497 * 109.46938 * 240.00890 * 2 1 3 5 5 C 1.39689 * 120.00485 * 84.99461 * 4 2 1 6 6 C 1.39333 * 119.94833 * 0.02562 * 5 4 2 7 7 C 1.38475 * 120.42315 * 179.97438 * 6 5 4 8 8 C 1.37684 * 120.32875 * 0.02562 * 7 6 5 9 9 C 1.40758 * 119.89171 * 0.02562 * 8 7 6 10 10 C 1.41406 * 120.21015 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99716 * 24.41896 * 10 9 8 12 12 C 1.39924 * 119.99769 * 204.42316 * 10 9 8 13 13 N 1.30824 * 120.00724 * 17.87456 * 12 10 9 14 14 Si 1.86810 * 119.99691 * 197.88225 * 12 10 9 15 15 H 1.48492 * 109.47112 * 89.99701 * 14 12 10 16 16 H 1.48500 * 109.46776 * 209.99951 * 14 12 10 17 17 H 1.48493 * 109.46905 * 329.99337 * 14 12 10 18 18 C 1.38276 * 119.95336 * 179.97438 * 5 4 2 19 19 C 1.52995 * 109.47706 * 120.00663 * 2 1 3 20 20 H 1.09000 * 110.36755 * 57.34329 * 19 2 1 21 21 C 1.54386 * 110.40990 * 295.00125 * 19 2 1 22 22 C 1.54256 * 105.05971 * 217.36752 * 21 19 2 23 23 C 1.54372 * 105.06224 * 0.02562 * 22 21 19 24 24 N 1.48555 * 110.41409 * 179.82842 * 19 2 1 25 25 H 1.08994 * 109.47455 * 59.99545 * 1 2 3 26 26 H 1.08996 * 109.46753 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46913 * 299.99128 * 1 2 3 28 28 H 0.97003 * 120.00151 * 264.99675 * 4 2 1 29 29 H 1.08003 * 119.79010 * 359.70157 * 6 5 4 30 30 H 1.08000 * 119.84009 * 180.02562 * 7 6 5 31 31 H 1.08001 * 120.05710 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00903 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.16070 * 0.04527 * 18 5 4 34 34 H 1.09000 * 110.31978 * 336.26139 * 21 19 2 35 35 H 1.08994 * 110.32380 * 98.46546 * 21 19 2 36 36 H 1.08999 * 110.32310 * 118.89392 * 22 21 19 37 37 H 1.08995 * 110.32176 * 240.99982 * 22 21 19 38 38 H 1.09004 * 110.41709 * 142.62872 * 23 22 21 39 39 H 1.09003 * 110.41368 * 265.07571 * 23 22 21 40 40 H 1.00899 * 110.99808 * 277.81822 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1517 0.0065 -2.3995 6 6 1.8204 1.3585 -2.4607 7 6 1.9493 2.0590 -3.6482 8 6 2.4061 1.4264 -4.7825 9 6 2.7436 0.0606 -4.7364 10 6 3.2139 -0.5957 -5.8972 11 1 3.6853 -0.0274 -6.6853 12 6 3.0684 -1.9815 -6.0248 13 7 2.2121 -2.6216 -5.2708 14 14 4.0971 -2.9178 -7.2718 15 1 5.3645 -3.3592 -6.6363 16 1 3.3412 -4.1049 -7.7456 17 1 4.4032 -2.0334 -8.4247 18 6 2.6131 -0.6461 -3.5279 19 6 2.0402 -0.7213 1.2491 20 1 1.6468 -1.7372 1.2878 21 6 1.6432 0.0584 2.5210 22 6 2.8470 -0.0897 3.4741 23 6 3.8704 -0.9458 2.6977 24 7 3.5255 -0.7371 1.2680 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 2.2491 -1.6316 -1.1529 29 1 1.4567 1.8623 -1.5773 30 1 1.6902 3.1068 -3.6848 31 1 2.5045 1.9768 -5.7065 32 1 2.1114 -3.5824 -5.3590 33 1 2.8703 -1.6940 -3.4816 34 1 1.4750 1.1090 2.2839 35 1 0.7500 -0.3771 2.9687 36 1 3.2697 0.8882 3.7048 37 1 2.5443 -0.5963 4.3904 38 1 4.8848 -0.6013 2.8987 39 1 3.7656 -1.9977 2.9635 40 1 3.8865 -1.4856 0.6957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -2.932920 kcal Electronic energy + Delta-G solvation = -19348.332907 eV Core-core repulsion = 16546.988239 eV Total energy + Delta-G solvation = -2801.344668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27338 -39.14982 -36.64115 -35.16933 -32.61829 -31.34664 -31.17561 -28.81024 -28.42802 -27.06374 -23.90679 -22.98539 -22.10902 -21.42080 -20.76315 -19.06196 -17.97172 -17.36907 -16.89372 -16.50418 -16.12221 -15.59834 -15.25555 -14.65409 -14.50472 -14.06438 -13.96615 -13.80376 -13.65013 -13.26368 -13.06972 -12.83558 -12.77274 -12.61307 -12.44851 -12.39419 -12.13679 -11.95315 -11.85878 -11.44173 -11.31897 -11.22918 -11.05750 -10.45039 -9.50480 -9.21470 -8.59911 -7.83125 -6.29746 1.11144 1.37865 1.38701 1.51482 1.60681 2.24084 2.80052 2.84975 3.24419 3.78384 3.81148 3.90992 4.08224 4.22035 4.32108 4.50023 4.54591 4.56307 4.66274 4.78817 4.81587 4.88522 4.94914 5.03204 5.03768 5.10129 5.20773 5.22120 5.26148 5.35759 5.36373 5.51155 5.64632 5.90659 6.00620 6.15093 6.24861 6.30412 6.34111 6.61782 6.97962 7.08930 7.12024 7.30348 8.40447 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004922 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.437472 B = 5687.374044 C = 6264.983326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.171 3.829 3 H 0.065 0.935 4 N -0.743 5.743 5 C 0.230 3.770 6 C -0.300 4.300 7 C -0.064 4.064 8 C -0.289 4.289 9 C 0.109 3.891 10 C -0.506 4.506 11 H 0.069 0.931 12 C 0.039 3.961 13 N -0.823 5.823 14 Si 0.979 3.021 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.261 4.261 19 C 0.064 3.936 20 H 0.053 0.947 21 C -0.114 4.114 22 C -0.121 4.121 23 C 0.032 3.968 24 N -0.676 5.676 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.387 0.613 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.284 0.716 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -0.281 15.897 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.066 3.934 3 H 0.083 0.917 4 N -0.373 5.373 5 C 0.129 3.871 6 C -0.322 4.322 7 C -0.083 4.083 8 C -0.309 4.309 9 C 0.106 3.894 10 C -0.536 4.536 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.285 4.285 19 C -0.046 4.046 20 H 0.071 0.929 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.097 4.097 24 N -0.305 5.305 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.220 0.780 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.860 0.378 16.046 16.073 hybrid contribution 0.229 -1.760 -0.859 1.972 sum -0.632 -1.382 15.187 15.263 Atomic orbital electron populations 1.22241 0.95688 1.01977 1.02083 1.20802 0.93002 0.96363 0.83268 0.91710 1.44470 1.74698 1.11254 1.06838 1.17682 0.92477 0.91244 0.85721 1.20215 1.20037 0.93540 0.98456 1.20635 0.96845 0.98253 0.92547 1.20996 1.15585 0.96357 0.97985 1.17703 0.87332 0.91685 0.92660 1.19797 1.36717 0.93347 1.03769 0.91235 1.26674 0.94252 0.98395 0.98233 1.69924 1.27646 1.10558 1.36775 0.85269 0.78733 0.77678 0.78359 1.18788 1.19194 1.18432 1.20636 1.15942 0.99947 0.91966 1.22705 0.88735 0.98247 0.94915 0.92948 1.22325 0.98821 1.00799 0.93318 1.22299 0.94784 1.00636 0.98132 1.22977 1.00202 0.98595 0.87878 1.63566 1.08540 1.50028 1.08366 0.94074 0.92814 0.89721 0.78048 0.87191 0.86650 0.89446 0.90537 0.88322 0.90990 0.89448 0.91040 0.89556 0.90184 0.93579 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.25 71.98 0.67 -3.67 16 2 C 0.17 5.12 1.94 44.99 0.09 5.20 16 3 H 0.06 2.16 6.42 -2.38 -0.02 2.15 16 4 N -0.74 -27.98 5.11 -319.12 -1.63 -29.61 16 5 C 0.23 10.93 6.63 38.16 0.25 11.18 16 6 C -0.30 -13.72 8.86 22.59 0.20 -13.52 16 7 C -0.06 -3.03 10.01 22.20 0.22 -2.80 16 8 C -0.29 -15.36 9.79 22.75 0.22 -15.14 16 9 C 0.11 6.29 5.57 -21.31 -0.12 6.17 16 10 C -0.51 -29.03 9.05 23.46 0.21 -28.81 16 11 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 12 C 0.04 2.06 5.14 85.25 0.44 2.50 16 13 N -0.82 -44.59 10.96 21.82 0.24 -44.35 16 14 Si 0.98 39.93 29.60 68.60 2.03 41.96 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 16 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 C -0.26 -14.29 8.54 22.86 0.20 -14.09 16 19 C 0.06 1.52 2.76 45.06 0.12 1.65 16 20 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 21 C -0.11 -2.07 5.61 31.49 0.18 -1.90 16 22 C -0.12 -1.95 7.00 31.49 0.22 -1.73 16 23 C 0.03 0.62 7.47 86.45 0.65 1.27 16 24 N -0.68 -17.11 7.15 -479.06 -3.42 -20.53 16 25 H 0.04 1.31 7.69 -2.39 -0.02 1.29 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.75 7.43 -2.39 -0.02 1.73 16 28 H 0.39 14.13 8.61 -92.71 -0.80 13.33 16 29 H 0.11 4.46 6.07 -2.91 -0.02 4.44 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 33 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 34 H 0.07 1.37 7.81 -2.39 -0.02 1.35 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.34 8.77 8.92 -89.69 -0.80 7.97 16 Total: -1.00 -63.29 320.15 0.20 -63.09 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.56 Total: 43.14 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 3.54 Total: -53.70 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -4.81 Total: -94.49 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -63.29 0.20 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -63.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds