Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46821 * 2 1 4 4 N 1.46490 * 109.47045 * 120.00117 * 2 1 3 5 5 C 1.39692 * 120.00149 * 275.00059 * 4 2 1 6 6 C 1.39334 * 119.94929 * 0.02562 * 5 4 2 7 7 C 1.38479 * 120.42462 * 180.02562 * 6 5 4 8 8 C 1.37685 * 120.32384 * 359.97438 * 7 6 5 9 9 C 1.40750 * 119.89476 * 0.02562 * 8 7 6 10 10 C 1.41406 * 120.20931 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00184 * 24.32558 * 10 9 8 12 12 C 1.39933 * 119.99846 * 204.32749 * 10 9 8 13 13 N 1.30824 * 120.00267 * 17.73443 * 12 10 9 14 14 Si 1.86800 * 119.99918 * 197.74298 * 12 10 9 15 15 H 1.48505 * 109.47056 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47468 * 119.99474 * 14 12 10 17 17 H 1.48497 * 109.47003 * 240.00037 * 14 12 10 18 18 C 1.38276 * 119.95321 * 179.73088 * 5 4 2 19 19 C 1.52998 * 109.47307 * 240.00317 * 2 1 3 20 20 H 1.09001 * 110.33217 * 299.20318 * 19 2 1 21 21 C 1.54899 * 110.46837 * 176.87813 * 19 2 1 22 22 C 1.55401 * 101.74308 * 204.14237 * 21 19 2 23 23 C 1.54309 * 102.90056 * 35.48078 * 22 21 19 24 24 N 1.47445 * 107.37331 * 337.89757 * 23 22 21 25 25 H 1.09001 * 109.46824 * 60.00218 * 1 2 3 26 26 H 1.09003 * 109.46841 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47079 * 299.99582 * 1 2 3 28 28 H 0.97001 * 120.00001 * 95.00394 * 4 2 1 29 29 H 1.07995 * 119.78783 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.83630 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.05247 * 180.02562 * 8 7 6 32 32 H 0.97003 * 120.00225 * 179.97438 * 13 12 10 33 33 H 1.08005 * 120.16034 * 359.97438 * 18 5 4 34 34 H 1.08996 * 110.99622 * 322.14570 * 21 19 2 35 35 H 1.08999 * 110.98941 * 85.96458 * 21 19 2 36 36 H 1.09005 * 110.67501 * 277.17639 * 22 21 19 37 37 H 1.09003 * 110.84666 * 153.86683 * 22 21 19 38 38 H 1.08994 * 109.89283 * 218.40756 * 23 22 21 39 39 H 1.09003 * 109.88899 * 97.38085 * 23 22 21 40 40 H 1.00901 * 111.00393 * 236.66315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1517 0.0062 2.3994 6 6 1.8196 1.3580 2.4610 7 6 1.9485 2.0584 3.6486 8 6 2.4063 1.4258 4.7826 9 6 2.7458 0.0606 4.7357 10 6 3.2171 -0.5956 5.8962 11 1 2.9630 -0.2132 6.8737 12 6 4.0130 -1.7405 5.7780 13 7 4.6072 -2.0100 4.6441 14 14 4.2268 -2.8842 7.2394 15 1 3.4570 -2.3591 8.3957 16 1 3.7283 -4.2376 6.8859 17 1 5.6654 -2.9647 7.5986 18 6 2.6074 -0.6480 3.5292 19 6 2.0401 -0.7212 -1.2493 20 1 1.6962 -1.7555 -1.2564 21 6 3.5868 -0.6665 -1.3127 22 6 3.8472 -0.8397 -2.8349 23 6 2.6636 -0.0845 -3.4750 24 7 1.5872 -0.0198 -2.4695 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2491 -1.6318 1.1525 29 1 1.4592 1.8627 1.5769 30 1 1.6879 3.1059 3.6857 31 1 2.5048 1.9762 5.7065 32 1 5.1591 -2.8035 4.5623 33 1 2.8603 -1.6970 3.4839 34 1 3.9583 0.2964 -0.9623 35 1 4.0300 -1.4844 -0.7446 36 1 3.8267 -1.8939 -3.1114 37 1 4.7952 -0.3837 -3.1206 38 1 2.3149 -0.6211 -4.3574 39 1 2.9730 0.9232 -3.7523 40 1 0.7351 -0.4266 -2.8251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400442920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -2.695044 kcal Electronic energy + Delta-G solvation = -19359.713800 eV Core-core repulsion = 16558.379447 eV Total energy + Delta-G solvation = -2801.334353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28620 -39.17977 -36.68752 -35.17963 -32.51521 -31.34132 -31.10443 -28.88988 -28.56483 -27.07490 -23.89109 -22.98479 -21.89805 -21.69515 -20.77782 -19.10682 -17.96920 -17.43615 -16.87723 -16.50211 -16.17970 -15.62058 -15.00776 -14.65105 -14.39181 -14.29664 -14.03575 -13.84880 -13.60304 -13.38938 -13.12763 -12.94112 -12.76171 -12.64394 -12.58299 -12.13838 -12.09769 -12.04548 -11.69124 -11.58884 -11.44694 -11.24438 -11.04323 -10.45967 -9.39749 -9.22737 -8.60788 -7.86109 -6.30295 1.09498 1.36136 1.38923 1.53518 1.58754 2.24021 2.66391 2.83864 3.43183 3.63810 3.77592 3.89547 4.09267 4.16809 4.30209 4.44364 4.50569 4.57763 4.72654 4.80095 4.82259 4.91266 4.95009 4.99836 5.05144 5.11550 5.12515 5.21861 5.31854 5.34308 5.42392 5.49514 5.63836 5.88970 6.00278 6.13998 6.23949 6.29899 6.51063 6.61008 6.97037 7.07783 7.10634 7.29242 8.39934 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.004995 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.680458 B = 5603.937417 C = 6297.613068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.172 3.828 3 H 0.060 0.940 4 N -0.746 5.746 5 C 0.229 3.771 6 C -0.301 4.301 7 C -0.064 4.064 8 C -0.287 4.287 9 C 0.109 3.891 10 C -0.505 4.505 11 H 0.070 0.930 12 C 0.039 3.961 13 N -0.822 5.822 14 Si 0.978 3.022 15 H -0.260 1.260 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.260 4.260 19 C 0.082 3.918 20 H 0.060 0.940 21 C -0.124 4.124 22 C -0.138 4.138 23 C 0.050 3.950 24 N -0.682 5.682 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.389 0.611 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.284 0.716 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 -1.659 -14.593 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.078 0.922 4 N -0.377 5.377 5 C 0.127 3.873 6 C -0.323 4.323 7 C -0.082 4.082 8 C -0.308 4.308 9 C 0.106 3.894 10 C -0.535 4.535 11 H 0.088 0.912 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.799 3.201 15 H -0.184 1.184 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.284 4.284 19 C -0.029 4.029 20 H 0.078 0.922 21 C -0.163 4.163 22 C -0.176 4.176 23 C -0.079 4.079 24 N -0.313 5.313 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.222 0.778 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.150 -1.006 -14.645 15.013 hybrid contribution 0.371 -1.614 0.662 1.783 sum -2.779 -2.620 -13.983 14.495 Atomic orbital electron populations 1.22151 0.95688 1.01608 1.01835 1.20619 0.93658 0.95912 0.83215 0.92165 1.44501 1.74889 1.11537 1.06783 1.17674 0.92495 0.91352 0.85760 1.20228 1.19960 0.93759 0.98401 1.20639 0.96739 0.98292 0.92576 1.21001 1.16453 0.95110 0.98206 1.17706 0.87471 0.91113 0.93088 1.19820 1.29444 1.10336 0.93888 0.91187 1.26684 0.92633 0.98408 0.99874 1.69928 1.22231 1.24750 1.27952 0.85227 0.78817 0.77797 0.78226 1.18410 1.18860 1.19074 1.20644 1.15007 0.99498 0.93247 1.22378 0.94580 0.95600 0.90310 0.92200 1.22683 0.94889 1.01561 0.97128 1.22847 0.99664 1.01198 0.93939 1.22602 0.90726 1.00566 0.93990 1.61496 1.06791 1.58403 1.04610 0.90032 0.92868 0.94309 0.77758 0.87275 0.86650 0.89365 0.90505 0.88228 0.92723 0.91702 0.90540 0.90157 0.90968 0.90966 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.29 71.98 0.67 -3.57 16 2 C 0.17 5.24 2.02 44.99 0.09 5.33 16 3 H 0.06 2.10 6.47 -2.39 -0.02 2.08 16 4 N -0.75 -28.04 4.97 -319.13 -1.58 -29.63 16 5 C 0.23 10.79 6.63 38.16 0.25 11.04 16 6 C -0.30 -13.76 8.85 22.59 0.20 -13.56 16 7 C -0.06 -3.00 10.01 22.20 0.22 -2.78 16 8 C -0.29 -15.17 9.79 22.75 0.22 -14.95 16 9 C 0.11 6.24 5.57 -21.31 -0.12 6.13 16 10 C -0.51 -28.73 9.05 23.46 0.21 -28.51 16 11 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 12 C 0.04 2.02 5.14 85.25 0.44 2.46 16 13 N -0.82 -44.25 10.96 21.82 0.24 -44.01 16 14 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 18 C -0.26 -14.13 8.53 22.86 0.19 -13.93 16 19 C 0.08 1.98 2.85 45.38 0.13 2.10 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 C -0.12 -3.17 6.23 32.07 0.20 -2.97 16 22 C -0.14 -2.57 6.97 31.86 0.22 -2.35 16 23 C 0.05 0.85 7.57 86.64 0.66 1.50 16 24 N -0.68 -13.64 6.40 -482.46 -3.09 -16.73 16 25 H 0.08 1.88 7.69 -2.39 -0.02 1.86 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.23 7.69 -2.39 -0.02 1.21 16 28 H 0.39 14.12 8.61 -92.71 -0.80 13.33 16 29 H 0.11 4.48 6.07 -2.91 -0.02 4.47 16 30 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 33 H 0.10 5.63 6.17 -2.91 -0.02 5.61 16 34 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.35 5.60 8.91 -89.69 -0.80 4.80 16 Total: -1.00 -62.08 320.74 0.63 -61.45 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.56 Total: 41.33 kcal Atomic # 6 Polarization: -57.64 SS G_CDS: 3.59 Total: -54.05 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -4.44 Total: -90.36 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -62.08 0.63 -61.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400442920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.754 kcal (2) G-P(sol) polarization free energy of solvation -62.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds