Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.50700 * 2 1 4 4 C 1.53038 * 109.53189 * 120.10379 * 2 1 3 5 5 N 1.46847 * 109.52451 * 179.14085 * 4 2 1 6 6 C 1.46933 * 111.21802 * 298.25423 * 5 4 2 7 7 C 1.53040 * 109.48066 * 61.71335 * 6 5 4 8 8 H 1.08999 * 109.50033 * 180.87872 * 7 6 5 9 9 N 1.46504 * 109.50038 * 60.80283 * 7 6 5 10 10 C 1.39678 * 119.99796 * 85.07693 * 9 7 6 11 11 C 1.39335 * 119.95530 * 0.29904 * 10 9 7 12 12 C 1.38474 * 120.42454 * 180.25546 * 11 10 9 13 13 C 1.37689 * 120.32602 * 359.44000 * 12 11 10 14 14 C 1.40749 * 119.89347 * 0.28102 * 13 12 11 15 15 C 1.41411 * 120.20766 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99859 * 150.21374 * 15 14 13 17 17 C 1.39926 * 119.99690 * 330.20938 * 15 14 13 18 18 N 1.30835 * 119.99765 * 161.72543 * 17 15 14 19 19 Si 1.86803 * 120.00453 * 341.72169 * 17 15 14 20 20 H 1.48496 * 109.46678 * 95.41040 * 19 17 15 21 21 H 1.48497 * 109.46948 * 215.41487 * 19 17 15 22 22 H 1.48498 * 109.46882 * 335.41655 * 19 17 15 23 23 C 1.38283 * 119.94948 * 179.97438 * 10 9 7 24 24 C 1.53120 * 109.31256 * 300.84440 * 7 6 5 25 25 H 1.08999 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47098 * 300.08037 * 1 2 3 27 27 H 1.09001 * 109.46566 * 60.07950 * 1 2 3 28 28 H 1.08998 * 109.46080 * 299.15223 * 4 2 1 29 29 H 1.09000 * 109.46851 * 59.12767 * 4 2 1 30 30 H 1.00893 * 110.99875 * 174.15755 * 5 4 2 31 31 H 1.09005 * 109.44869 * 301.73308 * 6 5 4 32 32 H 1.08995 * 109.51351 * 181.73963 * 6 5 4 33 33 H 0.97002 * 119.99889 * 265.07751 * 9 7 6 34 34 H 1.08003 * 119.78577 * 359.97216 * 11 10 9 35 35 H 1.08006 * 119.83635 * 179.71961 * 12 11 10 36 36 H 1.07999 * 120.05099 * 180.29385 * 13 12 11 37 37 H 0.96991 * 120.00184 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.16237 * 0.02562 * 23 10 9 39 39 H 1.08993 * 109.52397 * 177.57857 * 24 7 6 40 40 H 1.09003 * 109.51936 * 297.70655 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0417 -0.7234 1.2478 5 7 3.5100 -0.7413 1.2372 6 6 4.0246 -1.4721 0.0710 7 6 3.5712 -0.7708 -1.2115 8 1 3.9397 -1.3214 -2.0770 9 7 4.1036 0.5939 -1.2370 10 6 5.3911 0.8322 -1.7232 11 6 6.1660 -0.2277 -2.1895 12 6 7.4457 -0.0033 -2.6687 13 6 7.9623 1.2726 -2.7003 14 6 7.1892 2.3541 -2.2381 15 6 7.7135 3.6672 -2.2670 16 1 7.0501 4.5109 -2.3872 17 6 9.0916 3.8732 -2.1397 18 7 9.6206 5.0095 -2.5149 19 14 10.1763 2.5259 -1.4340 20 1 10.7646 1.7326 -2.5429 21 1 11.2652 3.1372 -0.6305 22 1 9.3610 1.6370 -0.5678 23 6 5.8924 2.1208 -1.7474 24 6 2.0412 -0.7234 -1.2490 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5151 0.8892 27 1 -0.3632 0.5126 -0.8907 28 1 1.6913 -0.2026 2.1388 29 1 1.6662 -1.7467 1.2541 30 1 3.8730 -1.1284 2.0953 31 1 3.6396 -2.4918 0.0829 32 1 5.1137 -1.4948 0.1071 33 1 3.5619 1.3319 -0.9162 34 1 5.7677 -1.2315 -2.1728 35 1 8.0397 -0.8325 -3.0237 36 1 8.9591 1.4433 -3.0794 37 1 10.5758 5.1525 -2.4263 38 1 5.2910 2.9438 -1.3907 39 1 1.7152 -0.1867 -2.1399 40 1 1.6458 -1.7389 -1.2704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401831114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -7.348695 kcal Electronic energy + Delta-G solvation = -19492.646284 eV Core-core repulsion = 16691.110134 eV Total energy + Delta-G solvation = -2801.536151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58347 -39.18877 -36.16154 -34.87751 -34.10154 -32.00388 -31.79297 -28.63397 -27.49369 -26.89120 -24.63829 -23.05637 -22.78652 -21.94140 -20.13234 -19.06350 -17.83751 -17.36810 -16.95638 -16.32377 -16.27384 -15.60799 -15.19866 -14.97678 -14.94368 -14.41608 -14.31318 -13.86341 -13.75608 -13.59685 -13.38422 -13.03343 -12.82234 -12.74323 -12.59077 -12.49363 -12.20511 -11.72026 -11.56584 -11.39901 -11.35677 -11.14119 -10.98379 -10.48522 -9.42906 -9.26770 -8.84711 -7.94516 -6.46536 0.90457 1.16588 1.31052 1.45921 1.55085 2.19590 2.71168 2.78195 3.36876 3.65755 3.82030 3.84726 3.98474 4.23521 4.39059 4.48160 4.51053 4.62695 4.65039 4.72580 4.77672 4.79916 4.83091 4.89745 4.94659 5.04632 5.09800 5.16461 5.24095 5.31225 5.34416 5.45169 5.61386 5.83591 5.92113 6.04705 6.12290 6.22627 6.43487 6.53197 6.78474 6.87952 6.99662 7.18896 8.24691 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.004818 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.089748 B = 5810.725361 C = 6004.210198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.058 0.942 4 C 0.066 3.934 5 N -0.699 5.699 6 C 0.047 3.953 7 C 0.154 3.846 8 H 0.079 0.921 9 N -0.727 5.727 10 C 0.253 3.747 11 C -0.290 4.290 12 C -0.048 4.048 13 C -0.297 4.297 14 C 0.108 3.892 15 C -0.492 4.492 16 H 0.049 0.951 17 C 0.049 3.951 18 N -0.857 5.857 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.257 1.257 23 C -0.300 4.300 24 C -0.116 4.116 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.347 0.653 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.393 0.607 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.292 0.708 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -15.536 6.331 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.076 0.924 4 C -0.063 4.063 5 N -0.331 5.331 6 C -0.084 4.084 7 C 0.048 3.952 8 H 0.096 0.904 9 N -0.357 5.357 10 C 0.149 3.851 11 C -0.313 4.313 12 C -0.066 4.066 13 C -0.318 4.318 14 C 0.105 3.895 15 C -0.522 4.522 16 H 0.067 0.933 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.181 1.181 23 C -0.324 4.324 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.166 0.834 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.227 0.773 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.279 -14.915 5.974 21.495 hybrid contribution 0.429 -0.145 0.474 0.656 sum -13.850 -15.060 6.448 21.452 Atomic orbital electron populations 1.21743 0.93387 1.02465 1.02190 1.21139 0.96286 0.99296 0.94279 0.92398 1.21988 0.87021 0.98963 0.98309 1.60074 1.08550 1.59192 1.05254 1.22366 0.99631 0.94818 0.91535 1.20995 0.94166 0.83444 0.96626 0.90357 1.44509 1.12964 1.08087 1.70127 1.17603 0.85142 0.92547 0.89760 1.20322 0.96540 0.97392 1.17036 1.20752 0.95078 0.95413 0.95406 1.20916 1.01175 0.94288 1.15398 1.17580 0.92167 0.92334 0.87382 1.19449 0.92886 0.93003 1.46833 0.93267 1.26799 0.99294 0.98385 0.91974 1.69741 1.14932 1.27083 1.36671 0.85382 0.77029 0.78328 0.79546 1.18457 1.20728 1.18054 1.20464 0.99292 0.94858 1.17834 1.21882 0.92975 1.02146 0.98402 0.91683 0.92104 0.92434 0.90528 0.94218 0.83436 0.93238 0.92224 0.77259 0.85710 0.85756 0.89246 0.89808 0.89528 0.91492 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 71.98 0.66 -1.25 16 2 C -0.09 -1.64 2.70 -10.74 -0.03 -1.67 16 3 H 0.06 1.30 6.68 -2.39 -0.02 1.29 16 4 C 0.07 1.15 5.84 86.33 0.50 1.65 16 5 N -0.70 -15.32 6.70 -513.80 -3.44 -18.77 16 6 C 0.05 1.08 6.13 86.31 0.53 1.61 16 7 C 0.15 3.76 2.50 45.04 0.11 3.87 16 8 H 0.08 1.95 6.46 -2.39 -0.02 1.93 16 9 N -0.73 -23.53 5.03 -318.86 -1.60 -25.13 16 10 C 0.25 10.49 6.63 38.17 0.25 10.74 16 11 C -0.29 -11.43 8.88 22.59 0.20 -11.23 16 12 C -0.05 -2.03 10.01 22.20 0.22 -1.81 16 13 C -0.30 -14.93 7.17 22.75 0.16 -14.77 16 14 C 0.11 5.94 5.10 -21.31 -0.11 5.83 16 15 C -0.49 -29.59 9.57 23.46 0.22 -29.37 16 16 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 17 C 0.05 2.79 5.40 85.25 0.46 3.25 16 18 N -0.86 -49.66 13.93 21.82 0.30 -49.36 16 19 Si 0.97 45.99 24.52 68.60 1.68 47.67 16 20 H -0.26 -11.55 6.71 99.48 0.67 -10.88 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.26 -12.50 6.86 99.48 0.68 -11.82 16 23 C -0.30 -14.92 9.63 22.86 0.22 -14.70 16 24 C -0.12 -2.18 4.95 30.68 0.15 -2.03 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.35 6.65 8.90 -89.70 -0.80 5.86 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 1.63 7.77 -2.39 -0.02 1.61 16 33 H 0.39 12.61 7.03 -92.71 -0.65 11.96 16 34 H 0.13 4.07 6.13 -2.91 -0.02 4.05 16 35 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.09 4.52 4.73 -2.91 -0.01 4.50 16 37 H 0.29 15.16 8.30 -92.71 -0.77 14.39 16 38 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.87 309.86 0.04 -64.83 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.47 Total: 30.62 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 3.57 Total: -49.87 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -4.74 Total: -93.25 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.68 Total: 47.67 kcal Total: -64.87 0.04 -64.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401831114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds