Wall clock time and date at job start Mon Mar 30 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.50061 * 2 1 4 4 C 1.53033 * 109.50044 * 239.92249 * 2 1 3 5 5 N 1.46850 * 109.51979 * 180.83939 * 4 2 1 6 6 C 1.46852 * 111.19731 * 61.74324 * 5 4 2 7 7 C 1.53036 * 109.52087 * 298.25476 * 6 5 4 8 8 H 1.09000 * 109.50330 * 179.15985 * 7 6 5 9 9 N 1.46493 * 109.50337 * 299.23875 * 7 6 5 10 10 C 1.39690 * 120.00217 * 275.00025 * 9 7 6 11 11 C 1.39339 * 119.94639 * 359.97438 * 10 9 7 12 12 C 1.38477 * 120.41751 * 179.97438 * 11 10 9 13 13 C 1.37685 * 120.33038 * 359.76307 * 12 11 10 14 14 C 1.40753 * 119.89004 * 0.51312 * 13 12 11 15 15 C 1.41411 * 120.20718 * 179.74011 * 14 13 12 16 16 H 1.07999 * 119.99958 * 155.06391 * 15 14 13 17 17 C 1.39924 * 119.99913 * 335.06276 * 15 14 13 18 18 N 1.30832 * 120.00188 * 342.67666 * 17 15 14 19 19 Si 1.86806 * 119.99934 * 162.68126 * 17 15 14 20 20 H 1.48502 * 109.47098 * 87.34756 * 19 17 15 21 21 H 1.48497 * 109.46950 * 327.34404 * 19 17 15 22 22 H 1.48499 * 109.46850 * 207.34411 * 19 17 15 23 23 C 1.38277 * 119.94937 * 180.02562 * 10 9 7 24 24 C 1.53115 * 109.53447 * 120.09677 * 2 1 3 25 25 H 1.08991 * 109.47358 * 180.08314 * 1 2 3 26 26 H 1.09010 * 109.46975 * 300.07970 * 1 2 3 27 27 H 1.08999 * 109.47235 * 60.07640 * 1 2 3 28 28 H 1.09002 * 109.46508 * 60.82395 * 4 2 1 29 29 H 1.09000 * 109.45504 * 300.84955 * 4 2 1 30 30 H 1.00903 * 110.99458 * 185.83412 * 5 4 2 31 31 H 1.08997 * 109.45763 * 178.23784 * 6 5 4 32 32 H 1.08999 * 109.46258 * 58.26983 * 6 5 4 33 33 H 0.97003 * 120.00429 * 95.00524 * 9 7 6 34 34 H 1.07992 * 119.78928 * 0.02562 * 11 10 9 35 35 H 1.08002 * 119.83054 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.06150 * 180.25814 * 13 12 11 37 37 H 0.96999 * 120.00268 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.16482 * 359.95595 * 23 10 9 39 39 H 1.09001 * 109.51967 * 57.71037 * 24 2 1 40 40 H 1.09002 * 109.52684 * 297.52216 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2483 5 7 3.5093 -0.7408 -1.2386 6 6 4.0237 -1.4716 -0.0734 7 6 3.5720 -0.7709 1.2100 8 1 3.9415 -1.3219 2.0748 9 7 4.1043 0.5937 1.2355 10 6 5.3931 0.8317 1.7188 11 6 6.1713 -0.2295 2.1768 12 6 7.4504 -0.0047 2.6574 13 6 7.9693 1.2703 2.6834 14 6 7.1928 2.3530 2.2295 15 6 7.7170 3.6660 2.2583 16 1 7.3365 4.4144 1.5789 17 6 8.7287 3.9956 3.1670 18 7 8.9571 3.2252 4.1995 19 14 9.7531 5.5358 2.9061 20 1 9.0731 6.6954 3.5372 21 1 9.9094 5.7856 1.4507 22 1 11.0911 5.3507 3.5231 23 6 5.8943 2.1203 1.7429 24 6 2.0420 -0.7236 1.2485 25 1 -0.3633 -1.0276 0.0015 26 1 -0.3633 0.5151 0.8894 27 1 -0.3634 0.5126 -0.8907 28 1 1.6899 -0.2019 -2.1390 29 1 1.6653 -1.7462 -1.2545 30 1 3.8718 -1.1278 -2.0971 31 1 5.1128 -1.4942 -0.1108 32 1 3.6388 -2.4913 -0.0852 33 1 3.5618 1.3320 0.9170 34 1 5.7747 -1.2338 2.1560 35 1 8.0455 -0.8343 3.0096 36 1 8.9689 1.4401 3.0552 37 1 9.6582 3.4539 4.8296 38 1 5.2920 2.9435 1.3883 39 1 1.6466 -1.7392 1.2687 40 1 1.7165 -0.1872 2.1397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401831115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:48 Heat of formation + Delta-G solvation = -6.423679 kcal Electronic energy + Delta-G solvation = -19380.752973 eV Core-core repulsion = 16579.256934 eV Total energy + Delta-G solvation = -2801.496039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51667 -39.01611 -36.18122 -34.65887 -34.10398 -31.77794 -31.40043 -28.32561 -27.48591 -27.01089 -24.64926 -23.06935 -22.45810 -21.96182 -20.09499 -18.93300 -17.64070 -17.17261 -16.92545 -16.35617 -16.03915 -15.55732 -15.08288 -14.96304 -14.74015 -14.55797 -13.98958 -13.79335 -13.60167 -13.30892 -13.27377 -13.02298 -12.77803 -12.66057 -12.59274 -12.46020 -12.09164 -11.72307 -11.56708 -11.38045 -11.26146 -11.10203 -10.97126 -10.38728 -9.29838 -9.25227 -8.57732 -7.81091 -6.29527 1.08719 1.38228 1.41290 1.52669 1.62998 2.24459 2.82946 2.87331 3.37963 3.79875 3.84558 3.92781 3.98715 4.25055 4.46632 4.50307 4.54807 4.63811 4.71215 4.74151 4.78674 4.85382 4.89897 4.96010 5.10470 5.18329 5.19733 5.29180 5.31408 5.34302 5.44918 5.47421 5.66811 5.99986 6.07527 6.17648 6.24912 6.37422 6.54358 6.69156 6.96848 7.06611 7.14099 7.33066 8.40577 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.004384 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.612491 B = 6385.368331 C = 6709.371280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.058 0.942 4 C 0.066 3.934 5 N -0.697 5.697 6 C 0.049 3.951 7 C 0.156 3.844 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.243 3.757 11 C -0.303 4.303 12 C -0.075 4.075 13 C -0.235 4.235 14 C 0.114 3.886 15 C -0.506 4.506 16 H 0.069 0.931 17 C 0.037 3.963 18 N -0.826 5.826 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.265 1.265 23 C -0.315 4.315 24 C -0.116 4.116 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.347 0.653 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.391 0.609 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.286 0.714 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 -8.234 -7.363 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.063 4.063 5 N -0.329 5.329 6 C -0.082 4.082 7 C 0.050 3.950 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.141 3.859 11 C -0.326 4.326 12 C -0.094 4.094 13 C -0.256 4.256 14 C 0.111 3.889 15 C -0.535 4.535 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.452 5.452 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.189 1.189 23 C -0.339 4.339 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.225 0.775 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.716 -7.862 -6.829 16.435 hybrid contribution 0.428 0.145 -0.215 0.500 sum -12.288 -7.716 -7.043 16.129 Atomic orbital electron populations 1.21740 0.93260 1.02475 1.02239 1.21136 0.96350 0.99281 0.94164 0.92374 1.21994 0.86977 0.98965 0.98319 1.60049 1.08588 1.59121 1.05112 1.22317 0.99484 0.94708 0.91661 1.20909 0.94107 0.83716 0.96317 0.91233 1.44393 1.13016 1.07689 1.70899 1.17522 0.85126 0.92612 0.90632 1.20135 0.97028 0.96842 1.18623 1.20717 0.95386 0.95803 0.97504 1.21058 1.00490 0.92351 1.11697 1.17683 0.90127 0.93538 0.87503 1.19784 1.18859 0.96727 1.18174 0.91261 1.26740 0.96781 1.01533 0.92733 1.69924 1.27606 1.38521 1.09115 0.85250 0.77612 0.77333 0.79684 1.18608 1.18465 1.18916 1.20481 0.97571 0.94557 1.21338 1.21884 0.92966 1.02074 0.98503 0.91703 0.92470 0.91913 0.90281 0.94255 0.83432 0.92523 0.93428 0.77465 0.86986 0.87586 0.88786 0.90356 0.89805 0.89364 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.20 71.98 0.66 -1.41 16 2 C -0.09 -1.78 2.70 -10.74 -0.03 -1.81 16 3 H 0.06 1.40 6.68 -2.38 -0.02 1.39 16 4 C 0.07 1.25 5.83 86.32 0.50 1.75 16 5 N -0.70 -16.59 6.70 -514.00 -3.44 -20.03 16 6 C 0.05 1.27 6.11 86.32 0.53 1.79 16 7 C 0.16 4.37 2.50 45.04 0.11 4.48 16 8 H 0.07 2.07 6.48 -2.39 -0.02 2.06 16 9 N -0.73 -26.18 5.03 -318.88 -1.60 -27.78 16 10 C 0.24 11.17 6.63 38.16 0.25 11.42 16 11 C -0.30 -13.76 8.86 22.59 0.20 -13.56 16 12 C -0.08 -3.72 10.01 22.20 0.22 -3.49 16 13 C -0.24 -13.28 8.69 22.75 0.20 -13.09 16 14 C 0.11 6.65 5.57 -21.31 -0.12 6.53 16 15 C -0.51 -29.23 9.05 23.46 0.21 -29.02 16 16 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 17 C 0.04 1.96 5.15 85.25 0.44 2.40 16 18 N -0.83 -45.61 10.95 21.82 0.24 -45.37 16 19 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.32 -16.70 9.63 22.86 0.22 -16.48 16 24 C -0.12 -2.50 4.95 30.67 0.15 -2.34 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.35 7.19 8.90 -89.69 -0.80 6.39 16 31 H 0.06 1.75 7.71 -2.39 -0.02 1.73 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.39 13.69 7.03 -92.71 -0.65 13.04 16 34 H 0.11 4.40 6.09 -2.91 -0.02 4.38 16 35 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.09 5.55 6.17 -2.91 -0.02 5.53 16 37 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 38 H 0.08 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.89 314.98 0.37 -63.52 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.41 Total: 40.21 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 3.55 Total: -52.83 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.81 Total: -93.18 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -63.89 0.37 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401831115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.098 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds