Wall clock time and date at job start Mon Mar 30 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.53658 * 2 1 4 4 C 1.53044 * 109.50213 * 239.90936 * 2 1 3 5 5 N 1.46850 * 109.52467 * 180.87707 * 4 2 1 6 6 C 1.46846 * 111.19903 * 61.74006 * 5 4 2 7 7 C 1.53040 * 109.52061 * 298.26229 * 6 5 4 8 8 H 1.08997 * 109.49949 * 299.23390 * 7 6 5 9 9 N 1.46505 * 109.53013 * 179.14142 * 7 6 5 10 10 C 1.39684 * 120.00226 * 85.17546 * 9 7 6 11 11 C 1.39328 * 119.95222 * 359.72026 * 10 9 7 12 12 C 1.38487 * 120.42568 * 179.76435 * 11 10 9 13 13 C 1.37681 * 120.32096 * 0.51233 * 12 11 10 14 14 C 1.40750 * 119.89425 * 359.74483 * 13 12 11 15 15 C 1.41403 * 120.20567 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00373 * 204.47949 * 15 14 13 17 17 C 1.39938 * 120.00238 * 24.48300 * 15 14 13 18 18 N 1.30835 * 119.99692 * 17.88355 * 17 15 14 19 19 Si 1.86800 * 120.00310 * 197.88178 * 17 15 14 20 20 H 1.48499 * 109.46810 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46915 * 120.00144 * 19 17 15 22 22 H 1.48495 * 109.46982 * 240.00044 * 19 17 15 23 23 C 1.38278 * 119.94835 * 179.97438 * 10 9 7 24 24 C 1.53111 * 109.50967 * 120.10627 * 2 1 3 25 25 H 1.09004 * 109.46561 * 299.89364 * 1 2 3 26 26 H 1.09001 * 109.47275 * 59.89703 * 1 2 3 27 27 H 1.09001 * 109.46801 * 179.89846 * 1 2 3 28 28 H 1.08992 * 109.46062 * 300.89544 * 4 2 1 29 29 H 1.09001 * 109.46041 * 60.86114 * 4 2 1 30 30 H 1.00896 * 110.99921 * 185.84091 * 5 4 2 31 31 H 1.08997 * 109.46469 * 178.24264 * 6 5 4 32 32 H 1.09000 * 109.46231 * 58.26952 * 6 5 4 33 33 H 0.97005 * 119.99432 * 265.16733 * 9 7 6 34 34 H 1.08004 * 119.78712 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.83625 * 180.25877 * 12 11 10 36 36 H 1.08000 * 120.05084 * 179.76394 * 13 12 11 37 37 H 0.96997 * 119.99975 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.16531 * 359.95182 * 23 10 9 39 39 H 1.09003 * 109.51922 * 297.50145 * 24 2 1 40 40 H 1.09004 * 109.52553 * 57.68372 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7233 -1.2482 5 7 3.5093 -0.7419 -1.2381 6 6 4.0231 -1.4729 -0.0728 7 6 3.5712 -0.7720 1.2105 8 1 3.9678 0.2431 1.2295 9 7 4.0665 -1.5126 2.3735 10 6 5.3538 -1.2711 2.8589 11 6 6.1682 -0.3298 2.2328 12 6 7.4443 -0.0791 2.7088 13 6 7.9262 -0.7656 3.8006 14 6 7.1170 -1.7232 4.4402 15 6 7.6055 -2.4325 5.5618 16 1 7.1944 -3.3999 5.8100 17 6 8.6216 -1.8809 6.3502 18 7 8.8794 -0.6000 6.2830 19 14 9.6099 -2.9735 7.4987 20 1 9.1260 -4.3731 7.3886 21 1 11.0456 -2.9156 7.1233 22 1 9.4443 -2.5004 8.8964 23 6 5.8200 -1.9703 3.9570 24 6 2.0413 -0.7239 1.2485 25 1 -0.3632 0.5122 0.8910 26 1 -0.3634 0.5154 -0.8891 27 1 -0.3633 -1.0277 -0.0018 28 1 1.6648 -1.7462 -1.2547 29 1 1.6904 -0.2020 -2.1390 30 1 3.8718 -1.1290 -2.0965 31 1 5.1121 -1.4961 -0.1098 32 1 3.6376 -2.4924 -0.0847 33 1 3.5003 -2.1706 2.8064 34 1 5.8006 0.2102 1.3727 35 1 8.0659 0.6556 2.2186 36 1 8.9234 -0.5693 4.1658 37 1 9.5834 -0.2176 6.8297 38 1 5.1909 -2.7025 4.4412 39 1 1.7158 -0.1872 2.1397 40 1 1.6453 -1.7393 1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401831117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:55 Heat of formation + Delta-G solvation = -9.600291 kcal Electronic energy + Delta-G solvation = -19134.439788 eV Core-core repulsion = 16332.806001 eV Total energy + Delta-G solvation = -2801.633787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43181 -39.10927 -36.43536 -34.85111 -34.13942 -31.77131 -31.40498 -28.27956 -27.50585 -27.07039 -24.66854 -23.07994 -22.63057 -21.47652 -20.62798 -19.12138 -17.56799 -17.37897 -16.73427 -16.40121 -15.91170 -15.82712 -15.20039 -14.96036 -14.92850 -14.40632 -14.27553 -13.94019 -13.69898 -13.40875 -13.11018 -12.95331 -12.78179 -12.69995 -12.64990 -12.25859 -12.07605 -11.72557 -11.61906 -11.45491 -11.35276 -11.17381 -11.03887 -10.48743 -9.42602 -9.33084 -8.60444 -7.95747 -6.32018 1.04591 1.34304 1.39464 1.54342 1.58998 2.23161 2.64142 2.80822 3.39318 3.77625 3.85459 3.89471 3.96082 4.19346 4.31147 4.49221 4.56012 4.60178 4.66652 4.74204 4.76824 4.83098 4.89158 5.02752 5.07839 5.15414 5.17137 5.23382 5.30887 5.31651 5.42683 5.46694 5.59903 5.91291 6.00949 6.07257 6.21290 6.32305 6.47645 6.63313 6.89766 7.02482 7.04690 7.25458 8.38051 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045331 B = 0.003893 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.536805 B = 7191.514004 C = 7406.690256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.070 0.930 4 C 0.062 3.938 5 N -0.694 5.694 6 C 0.053 3.947 7 C 0.163 3.837 8 H 0.063 0.937 9 N -0.747 5.747 10 C 0.235 3.765 11 C -0.301 4.301 12 C -0.076 4.076 13 C -0.231 4.231 14 C 0.113 3.887 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.312 4.312 24 C -0.116 4.116 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.353 0.647 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.395 0.605 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.287 0.713 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 -0.451 -11.454 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.067 4.067 5 N -0.327 5.327 6 C -0.078 4.078 7 C 0.056 3.944 8 H 0.081 0.919 9 N -0.379 5.379 10 C 0.134 3.866 11 C -0.324 4.324 12 C -0.095 4.095 13 C -0.252 4.252 14 C 0.110 3.890 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.336 4.336 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.353 0.476 -11.214 16.691 hybrid contribution 0.407 -1.446 0.666 1.643 sum -11.946 -0.970 -10.549 15.966 Atomic orbital electron populations 1.21737 0.93006 1.02347 1.02623 1.21114 0.96546 0.99612 0.93201 0.91162 1.22071 0.86781 0.99019 0.98840 1.60152 1.08971 1.58448 1.05091 1.22250 0.99473 0.94825 0.91257 1.20712 0.94338 0.95072 0.84232 0.91923 1.44522 1.13264 1.46412 1.33691 1.17509 0.84911 0.92717 0.91421 1.20169 0.96779 1.08464 1.06959 1.20723 0.95446 0.97718 0.95567 1.21096 1.00496 1.04384 0.99229 1.17695 0.90146 0.90212 0.90938 1.19828 1.18519 1.04723 1.10203 0.90988 1.26775 0.96581 0.96068 0.98487 1.69930 1.26829 1.13136 1.35078 0.85166 0.78068 0.79085 0.77373 1.18246 1.18848 1.18967 1.20523 0.97600 1.10947 1.04522 1.21878 0.92918 1.01467 0.99165 0.92314 0.91166 0.92264 0.94804 0.89010 0.82796 0.92382 0.95273 0.77083 0.87303 0.87597 0.88593 0.90277 0.89104 0.91594 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 71.98 0.66 -1.27 16 2 C -0.09 -1.59 2.88 -10.74 -0.03 -1.62 16 3 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 4 C 0.06 1.09 5.83 86.33 0.50 1.59 16 5 N -0.69 -15.25 6.85 -514.00 -3.52 -18.77 16 6 C 0.05 1.45 6.06 86.33 0.52 1.98 16 7 C 0.16 4.81 2.30 45.04 0.10 4.92 16 8 H 0.06 2.14 6.48 -2.39 -0.02 2.12 16 9 N -0.75 -26.53 5.25 -318.88 -1.67 -28.21 16 10 C 0.24 10.74 6.63 38.16 0.25 10.99 16 11 C -0.30 -13.89 8.87 22.59 0.20 -13.69 16 12 C -0.08 -3.76 10.02 22.20 0.22 -3.54 16 13 C -0.23 -12.96 8.70 22.75 0.20 -12.76 16 14 C 0.11 6.46 5.57 -21.31 -0.12 6.34 16 15 C -0.50 -28.51 9.05 23.46 0.21 -28.30 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.88 5.14 85.25 0.44 2.32 16 18 N -0.82 -44.97 10.96 21.83 0.24 -44.73 16 19 Si 0.98 39.59 29.60 68.60 2.03 41.62 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.31 -16.14 9.63 22.86 0.22 -15.92 16 24 C -0.12 -2.65 4.76 30.67 0.15 -2.50 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.35 6.45 8.90 -89.70 -0.80 5.65 16 31 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.39 12.76 8.61 -92.70 -0.80 11.96 16 34 H 0.11 4.56 6.06 -2.91 -0.02 4.54 16 35 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 37 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 38 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -62.63 318.09 0.05 -62.58 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.56 Total: 38.98 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 3.53 Total: -51.47 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.95 Total: -91.71 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -62.63 0.05 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401831117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.983 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds