Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.50044 * 2 1 4 4 C 1.53042 * 109.53445 * 239.90512 * 2 1 3 5 5 N 1.46840 * 109.51990 * 180.85817 * 4 2 1 6 6 C 1.46850 * 111.20125 * 61.74176 * 5 4 2 7 7 C 1.53033 * 109.52224 * 298.25541 * 6 5 4 8 8 H 1.09004 * 109.50553 * 179.11506 * 7 6 5 9 9 N 1.46501 * 109.50632 * 299.23862 * 7 6 5 10 10 C 1.38856 * 119.99544 * 274.80554 * 9 7 6 11 11 C 1.39571 * 119.84311 * 359.72341 * 10 9 7 12 12 C 1.36346 * 120.15805 * 179.72388 * 11 10 9 13 13 C 1.40884 * 119.83361 * 0.54655 * 12 11 10 14 14 C 1.41141 * 120.15240 * 179.70376 * 13 12 11 15 15 H 1.07998 * 120.00340 * 204.63476 * 14 13 12 16 16 C 1.39869 * 120.00191 * 24.62942 * 14 13 12 17 17 N 1.30907 * 119.99622 * 17.95921 * 16 14 13 18 18 Si 1.86797 * 120.00193 * 197.95746 * 16 14 13 19 19 H 1.48502 * 109.47171 * 90.00241 * 18 16 14 20 20 H 1.48497 * 109.47105 * 209.99947 * 18 16 14 21 21 H 1.48502 * 109.46984 * 329.99733 * 18 16 14 22 22 C 1.40878 * 119.69439 * 359.72579 * 13 12 11 23 23 C 1.36345 * 119.83636 * 0.02562 * 22 13 12 24 24 C 1.53117 * 109.50423 * 120.08048 * 2 1 3 25 25 H 1.08998 * 109.46906 * 299.99838 * 1 2 3 26 26 H 1.09002 * 109.46819 * 59.99629 * 1 2 3 27 27 H 1.08995 * 109.46740 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.45866 * 300.87502 * 4 2 1 29 29 H 1.08996 * 109.45931 * 60.84176 * 4 2 1 30 30 H 1.00903 * 111.00222 * 185.83618 * 5 4 2 31 31 H 1.08998 * 109.46801 * 178.23728 * 6 5 4 32 32 H 1.09002 * 109.45488 * 58.26642 * 6 5 4 33 33 H 0.96989 * 120.00021 * 94.79900 * 9 7 6 34 34 H 1.07993 * 119.92180 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.07877 * 180.27885 * 12 11 10 36 36 H 0.96998 * 119.99690 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.08557 * 180.02562 * 22 13 12 38 38 H 1.07995 * 119.92168 * 179.97438 * 23 22 13 39 39 H 1.09006 * 109.52056 * 297.53793 * 24 2 1 40 40 H 1.09001 * 109.52324 * 57.66508 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7232 -1.2479 5 7 3.5100 -0.7410 -1.2372 6 6 4.0239 -1.4715 -0.0715 7 6 3.5713 -0.7706 1.2114 8 1 3.9396 -1.3219 2.0766 9 7 4.1035 0.5941 1.2371 10 6 5.3828 0.8313 1.7220 11 6 6.1566 -0.2321 2.1894 12 6 7.4158 -0.0073 2.6618 13 6 7.9308 1.3038 2.6879 14 6 9.2310 1.5450 3.1812 15 1 9.4878 2.5177 3.5739 16 6 10.1870 0.5242 3.1616 17 7 10.0147 -0.5191 2.3899 18 14 11.7095 0.6497 4.2366 19 1 11.4356 0.0286 5.5573 20 1 12.8380 -0.0588 3.5810 21 1 12.0654 2.0790 4.4258 22 6 7.1419 2.3730 2.2197 23 6 5.8864 2.1327 1.7454 24 6 2.0413 -0.7234 1.2489 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6662 -1.7464 -1.2542 29 1 1.6913 -0.2023 -2.1388 30 1 3.8733 -1.1281 -2.0953 31 1 5.1130 -1.4942 -0.1082 32 1 3.6389 -2.4912 -0.0835 33 1 3.5623 1.3318 0.9153 34 1 5.7586 -1.2359 2.1733 35 1 8.0151 -0.8316 3.0190 36 1 10.6775 -1.2272 2.3767 37 1 7.5306 3.3804 2.2364 38 1 5.2803 2.9514 1.3866 39 1 1.7151 -0.1867 2.1399 40 1 1.6449 -1.7386 1.2697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401862783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = 15.055102 kcal Electronic energy + Delta-G solvation = -19395.450803 eV Core-core repulsion = 16594.886154 eV Total energy + Delta-G solvation = -2800.564649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.30313 -37.42625 -34.53276 -33.16649 -32.82437 -30.16079 -29.36121 -27.77362 -26.56406 -24.20356 -23.64864 -21.85658 -20.78942 -20.36110 -18.61390 -17.13713 -16.58074 -15.89981 -15.26752 -14.92263 -14.48314 -14.09984 -13.85015 -13.78681 -13.06459 -12.97418 -12.64267 -12.40714 -12.20455 -12.02492 -11.84635 -11.60679 -11.59389 -11.18401 -10.98926 -10.87686 -10.65999 -10.46186 -10.29802 -10.11963 -9.60245 -9.21032 -9.15187 -8.47685 -8.21474 -7.40063 -6.56264 -6.25381 -3.94260 2.98053 3.17725 3.19952 3.22796 3.43933 4.11153 4.22360 4.52810 4.72007 4.81472 4.85590 4.92991 5.33581 5.40015 5.47665 5.53843 5.63206 5.69474 5.71288 5.75108 5.91067 6.01407 6.04444 6.11627 6.32459 6.36912 6.38991 6.43612 7.01714 7.02561 7.18866 7.29040 7.44614 7.47980 7.67355 7.78392 7.94498 8.23344 8.40154 8.62160 8.82545 8.93347 9.14289 9.24973 10.45133 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043899 B = 0.004229 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.676184 B = 6619.007644 C = 6868.303644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.679 5.679 6 C 0.041 3.959 7 C 0.167 3.833 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.105 3.895 11 C -0.170 4.170 12 C -0.122 4.122 13 C 0.070 3.930 14 C -0.469 4.469 15 H 0.071 0.929 16 C 0.075 3.925 17 N -0.810 5.810 18 Si 0.901 3.099 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.265 1.265 22 C -0.184 4.184 23 C -0.162 4.162 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.338 0.662 31 H 0.081 0.919 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.274 0.726 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 -3.204 -4.468 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.309 5.309 6 C -0.090 4.090 7 C 0.059 3.941 8 H 0.093 0.907 9 N -0.373 5.373 10 C 0.008 3.992 11 C -0.192 4.192 12 C -0.142 4.142 13 C 0.068 3.932 14 C -0.500 4.500 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.438 5.438 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.204 4.204 23 C -0.185 4.185 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.017 -2.988 -4.201 14.935 hybrid contribution 0.436 -0.743 -0.080 0.865 sum -13.581 -3.731 -4.281 14.720 Atomic orbital electron populations 1.21801 0.95289 1.01532 1.01713 1.21136 0.94660 1.00557 0.94522 0.90360 1.21942 0.88498 0.98016 0.98041 1.60077 1.06909 1.58843 1.05075 1.22524 1.00991 0.93511 0.91974 1.20577 0.91858 0.85981 0.95712 0.90743 1.43745 1.14808 1.05420 1.73331 1.17365 0.85864 0.93375 1.02623 1.20086 0.96112 0.95486 1.07526 1.20919 0.93339 0.97978 1.01971 1.17464 0.92898 0.91062 0.91814 1.19360 0.95413 0.97977 1.37244 0.91077 1.25764 0.99410 0.94773 0.94035 1.69865 1.34900 1.08429 1.30601 0.86432 0.80809 0.79275 0.80793 1.19638 1.20673 1.18925 1.20538 0.95315 0.97987 1.06556 1.19786 0.97152 0.93529 1.08004 1.21917 0.95639 1.00538 0.97984 0.92489 0.92757 0.92964 0.95843 0.91339 0.84418 0.90012 0.95881 0.78239 0.89552 0.86556 0.91492 0.89243 0.89759 0.91362 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.09 -0.98 2.70 -90.53 -0.24 -1.22 16 3 H 0.08 0.96 6.68 -51.93 -0.35 0.62 16 4 C 0.06 0.71 5.84 -3.83 -0.02 0.69 16 5 N -0.68 -8.98 6.70 -113.82 -0.76 -9.74 16 6 C 0.04 0.60 6.12 -3.83 -0.02 0.57 16 7 C 0.17 2.50 2.49 -67.85 -0.17 2.33 16 8 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 9 N -0.74 -13.04 4.99 -51.95 -0.26 -13.30 16 10 C 0.11 2.32 6.65 -83.69 -0.56 1.76 16 11 C -0.17 -4.00 8.78 -39.77 -0.35 -4.35 16 12 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 13 C 0.07 1.94 5.57 -106.80 -0.60 1.35 16 14 C -0.47 -13.01 9.03 -37.87 -0.34 -13.35 16 15 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 16 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 17 N -0.81 -21.89 10.96 55.54 0.61 -21.28 16 18 Si 0.90 19.62 29.60 -169.99 -5.03 14.59 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.18 -4.67 9.74 -39.27 -0.38 -5.05 16 23 C -0.16 -3.75 9.82 -39.77 -0.39 -4.14 16 24 C -0.12 -1.46 4.95 -26.61 -0.13 -1.59 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.34 4.01 8.90 -39.29 -0.35 3.66 16 31 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.38 6.42 7.02 -40.82 -0.29 6.13 16 34 H 0.09 1.85 6.11 -52.49 -0.32 1.53 16 35 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 36 H 0.27 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -28.40 314.72 -10.13 -38.54 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.14 Total: 12.10 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.29 Total: -25.64 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.41 Total: -44.33 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.40 -10.13 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401862783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.591 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds