Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.50044 * 2 1 4 4 C 1.53042 * 109.53445 * 239.90512 * 2 1 3 5 5 N 1.46840 * 109.51990 * 180.85817 * 4 2 1 6 6 C 1.46850 * 111.20125 * 61.74176 * 5 4 2 7 7 C 1.53033 * 109.52224 * 298.25541 * 6 5 4 8 8 H 1.09004 * 109.50553 * 179.11506 * 7 6 5 9 9 N 1.46501 * 109.50632 * 299.23862 * 7 6 5 10 10 C 1.38856 * 119.99544 * 274.80554 * 9 7 6 11 11 C 1.39571 * 119.84311 * 359.72341 * 10 9 7 12 12 C 1.36346 * 120.15805 * 179.72388 * 11 10 9 13 13 C 1.40884 * 119.83361 * 0.54655 * 12 11 10 14 14 C 1.41141 * 120.15240 * 179.70376 * 13 12 11 15 15 H 1.07998 * 120.00340 * 204.63476 * 14 13 12 16 16 C 1.39869 * 120.00191 * 24.62942 * 14 13 12 17 17 N 1.30907 * 119.99622 * 17.95921 * 16 14 13 18 18 Si 1.86797 * 120.00193 * 197.95746 * 16 14 13 19 19 H 1.48502 * 109.47171 * 90.00241 * 18 16 14 20 20 H 1.48497 * 109.47105 * 209.99947 * 18 16 14 21 21 H 1.48502 * 109.46984 * 329.99733 * 18 16 14 22 22 C 1.40878 * 119.69439 * 359.72579 * 13 12 11 23 23 C 1.36345 * 119.83636 * 0.02562 * 22 13 12 24 24 C 1.53117 * 109.50423 * 120.08048 * 2 1 3 25 25 H 1.08998 * 109.46906 * 299.99838 * 1 2 3 26 26 H 1.09002 * 109.46819 * 59.99629 * 1 2 3 27 27 H 1.08995 * 109.46740 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.45866 * 300.87502 * 4 2 1 29 29 H 1.08996 * 109.45931 * 60.84176 * 4 2 1 30 30 H 1.00903 * 111.00222 * 185.83618 * 5 4 2 31 31 H 1.08998 * 109.46801 * 178.23728 * 6 5 4 32 32 H 1.09002 * 109.45488 * 58.26642 * 6 5 4 33 33 H 0.96989 * 120.00021 * 94.79900 * 9 7 6 34 34 H 1.07993 * 119.92180 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.07877 * 180.27885 * 12 11 10 36 36 H 0.96998 * 119.99690 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.08557 * 180.02562 * 22 13 12 38 38 H 1.07995 * 119.92168 * 179.97438 * 23 22 13 39 39 H 1.09006 * 109.52056 * 297.53793 * 24 2 1 40 40 H 1.09001 * 109.52324 * 57.66508 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7232 -1.2479 5 7 3.5100 -0.7410 -1.2372 6 6 4.0239 -1.4715 -0.0715 7 6 3.5713 -0.7706 1.2114 8 1 3.9396 -1.3219 2.0766 9 7 4.1035 0.5941 1.2371 10 6 5.3828 0.8313 1.7220 11 6 6.1566 -0.2321 2.1894 12 6 7.4158 -0.0073 2.6618 13 6 7.9308 1.3038 2.6879 14 6 9.2310 1.5450 3.1812 15 1 9.4878 2.5177 3.5739 16 6 10.1870 0.5242 3.1616 17 7 10.0147 -0.5191 2.3899 18 14 11.7095 0.6497 4.2366 19 1 11.4356 0.0286 5.5573 20 1 12.8380 -0.0588 3.5810 21 1 12.0654 2.0790 4.4258 22 6 7.1419 2.3730 2.2197 23 6 5.8864 2.1327 1.7454 24 6 2.0413 -0.7234 1.2489 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6662 -1.7464 -1.2542 29 1 1.6913 -0.2023 -2.1388 30 1 3.8733 -1.1281 -2.0953 31 1 5.1130 -1.4942 -0.1082 32 1 3.6389 -2.4912 -0.0835 33 1 3.5623 1.3318 0.9153 34 1 5.7586 -1.2359 2.1733 35 1 8.0151 -0.8316 3.0190 36 1 10.6775 -1.2272 2.3767 37 1 7.5306 3.3804 2.2364 38 1 5.2803 2.9514 1.3866 39 1 1.7151 -0.1867 2.1399 40 1 1.6449 -1.7386 1.2697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401862783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -2.310010 kcal Electronic energy + Delta-G solvation = -19396.203811 eV Core-core repulsion = 16594.886154 eV Total energy + Delta-G solvation = -2801.317657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54386 -39.12078 -36.18100 -34.56236 -34.09234 -31.67529 -31.27305 -29.48903 -27.43172 -26.05840 -24.70335 -23.22735 -22.52416 -21.87734 -19.85545 -19.11998 -17.99407 -17.19192 -16.75715 -16.57531 -15.65061 -15.52266 -15.09032 -14.94566 -14.62977 -14.56051 -14.02582 -13.70453 -13.67691 -13.44937 -13.25134 -13.04988 -12.73657 -12.69881 -12.55702 -12.49693 -12.25948 -11.66147 -11.54178 -11.37111 -11.22335 -11.08439 -10.99089 -10.22733 -9.35545 -9.27560 -8.51391 -8.06012 -5.95555 1.14783 1.22918 1.40650 1.53254 1.62059 2.29259 2.87039 2.96016 3.38290 3.81254 3.86079 3.91822 4.00471 4.25956 4.43429 4.49027 4.54613 4.57488 4.64035 4.75769 4.79820 4.82181 4.91037 4.97077 5.06854 5.12113 5.21672 5.30377 5.33276 5.36047 5.46630 5.51134 5.74891 5.85459 6.01800 6.16199 6.22694 6.45154 6.52132 6.73845 6.95792 7.12400 7.22389 7.41101 8.51872 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043899 B = 0.004229 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.676184 B = 6619.007644 C = 6868.303644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.065 3.935 5 N -0.693 5.693 6 C 0.047 3.953 7 C 0.159 3.841 8 H 0.063 0.937 9 N -0.727 5.727 10 C 0.127 3.873 11 C -0.177 4.177 12 C -0.140 4.140 13 C 0.031 3.969 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.032 3.968 17 N -0.844 5.844 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.193 4.193 23 C -0.172 4.172 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.345 0.655 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.392 0.608 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.281 0.719 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 -3.511 -4.971 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.064 4.064 5 N -0.325 5.325 6 C -0.084 4.084 7 C 0.052 3.948 8 H 0.081 0.919 9 N -0.360 5.360 10 C 0.027 3.973 11 C -0.199 4.199 12 C -0.160 4.160 13 C 0.028 3.972 14 C -0.540 4.540 15 H 0.083 0.917 16 C -0.179 4.179 17 N -0.472 5.472 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.213 4.213 23 C -0.194 4.194 24 C -0.153 4.153 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.164 0.836 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.227 0.773 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.064 -3.299 -4.730 17.068 hybrid contribution 0.852 -0.657 -0.029 1.076 sum -15.212 -3.956 -4.759 16.423 Atomic orbital electron populations 1.21742 0.93274 1.02359 1.02350 1.21128 0.96275 0.99441 0.93861 0.91791 1.22016 0.86857 0.98896 0.98607 1.60058 1.08628 1.58893 1.04894 1.22322 0.99072 0.94705 0.92276 1.20799 0.94214 0.84167 0.95634 0.91905 1.43803 1.13061 1.07201 1.71963 1.17456 0.87082 0.92611 1.00178 1.20217 0.95389 0.96918 1.07395 1.20852 0.94491 0.97277 1.03406 1.17778 0.93727 0.92075 0.93611 1.19581 0.96485 0.98611 1.39293 0.91652 1.26581 1.02442 0.94086 0.94833 1.69931 1.36332 1.09225 1.31726 0.85304 0.76786 0.79362 0.78772 1.18963 1.19568 1.18568 1.20730 0.96241 0.97795 1.06572 1.20058 0.96742 0.94869 1.07748 1.21868 0.92762 1.01920 0.98714 0.92215 0.91859 0.92027 0.94647 0.90114 0.83646 0.93314 0.93967 0.77252 0.87806 0.88468 0.90904 0.88855 0.87008 0.91249 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 71.98 0.66 -1.25 16 2 C -0.09 -1.64 2.70 -10.74 -0.03 -1.67 16 3 H 0.06 1.39 6.68 -2.38 -0.02 1.37 16 4 C 0.07 1.22 5.84 86.33 0.50 1.72 16 5 N -0.69 -16.87 6.70 -514.02 -3.44 -20.31 16 6 C 0.05 1.30 6.12 86.32 0.53 1.83 16 7 C 0.16 4.47 2.49 45.04 0.11 4.59 16 8 H 0.06 1.94 6.43 -2.39 -0.02 1.92 16 9 N -0.73 -24.47 4.99 -318.28 -1.59 -26.06 16 10 C 0.13 5.52 6.65 38.67 0.26 5.77 16 11 C -0.18 -8.43 8.78 22.15 0.19 -8.24 16 12 C -0.14 -7.74 8.64 22.48 0.19 -7.54 16 13 C 0.03 1.77 5.57 -21.27 -0.12 1.65 16 14 C -0.51 -29.39 9.03 23.38 0.21 -29.18 16 15 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 16 C 0.03 1.73 5.13 85.23 0.44 2.16 16 17 N -0.84 -47.12 10.96 21.82 0.24 -46.88 16 18 Si 0.98 41.12 29.60 68.60 2.03 43.15 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 C -0.19 -10.03 9.74 22.47 0.22 -9.81 16 23 C -0.17 -7.84 9.82 22.15 0.22 -7.62 16 24 C -0.11 -2.39 4.95 30.67 0.15 -2.24 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.35 7.56 8.90 -89.69 -0.80 6.76 16 31 H 0.05 1.66 7.75 -2.39 -0.02 1.64 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.39 12.22 7.02 -92.72 -0.65 11.56 16 34 H 0.10 4.48 6.11 -2.91 -0.02 4.46 16 35 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 36 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 37 H 0.09 4.62 8.06 -2.91 -0.02 4.59 16 38 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.00 314.72 0.37 -62.63 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.41 Total: 37.29 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 3.54 Total: -49.82 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -4.79 Total: -93.25 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -63.00 0.37 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401862783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.322 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds