Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.50982 * 2 1 4 4 C 1.53040 * 109.53902 * 120.09651 * 2 1 3 5 5 N 1.46846 * 109.52605 * 179.13844 * 4 2 1 6 6 C 1.46852 * 111.19519 * 298.25895 * 5 4 2 7 7 C 1.53032 * 109.52514 * 61.74435 * 6 5 4 8 8 H 1.09000 * 109.53407 * 60.77825 * 7 6 5 9 9 N 1.46501 * 109.50230 * 180.87973 * 7 6 5 10 10 C 1.38859 * 119.99889 * 274.80052 * 9 7 6 11 11 C 1.39563 * 119.84333 * 180.02562 * 10 9 7 12 12 C 1.36337 * 120.16125 * 180.02562 * 11 10 9 13 13 C 1.40885 * 119.83734 * 359.97438 * 12 11 10 14 14 C 1.41138 * 120.15330 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00239 * 334.93742 * 14 13 12 16 16 C 1.39871 * 119.99733 * 154.93693 * 14 13 12 17 17 N 1.30900 * 119.99902 * 342.57032 * 16 14 13 18 18 Si 1.86801 * 119.99901 * 162.57349 * 16 14 13 19 19 H 1.48493 * 109.47039 * 265.59455 * 18 16 14 20 20 H 1.48497 * 109.46882 * 145.59438 * 18 16 14 21 21 H 1.48503 * 109.47139 * 25.59611 * 18 16 14 22 22 C 1.40882 * 119.69103 * 0.27294 * 13 12 11 23 23 C 1.36353 * 119.83175 * 359.46705 * 22 13 12 24 24 C 1.53119 * 109.50257 * 239.91890 * 2 1 3 25 25 H 1.08990 * 109.47437 * 180.08264 * 1 2 3 26 26 H 1.09008 * 109.47128 * 300.08074 * 1 2 3 27 27 H 1.09003 * 109.47286 * 60.07580 * 1 2 3 28 28 H 1.09001 * 109.46281 * 299.15464 * 4 2 1 29 29 H 1.09004 * 109.45764 * 59.13265 * 4 2 1 30 30 H 1.00899 * 111.00301 * 62.35669 * 5 4 2 31 31 H 1.09003 * 109.46042 * 301.71976 * 6 5 4 32 32 H 1.09003 * 109.46049 * 181.76269 * 6 5 4 33 33 H 0.96999 * 120.00402 * 94.80461 * 9 7 6 34 34 H 1.08004 * 119.91796 * 0.02562 * 11 10 9 35 35 H 1.08011 * 120.07952 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00217 * 179.97438 * 17 16 14 37 37 H 1.07993 * 120.08471 * 179.72770 * 22 13 12 38 38 H 1.07993 * 119.91631 * 180.27298 * 23 22 13 39 39 H 1.08999 * 109.52235 * 62.46208 * 24 2 1 40 40 H 1.08997 * 109.57319 * 302.30193 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7232 1.2478 5 7 3.5101 -0.7411 1.2372 6 6 4.0237 -1.4716 0.0714 7 6 3.5711 -0.7707 -1.2115 8 1 3.9672 0.2445 -1.2313 9 7 4.0662 -1.5117 -2.3744 10 6 5.3455 -1.2712 -2.8576 11 6 5.8136 -1.9786 -3.9659 12 6 7.0689 -1.7481 -4.4455 13 6 7.8938 -0.7927 -3.8198 14 6 9.1942 -0.5483 -4.3110 15 1 9.7149 -1.3149 -4.8656 16 6 9.8086 0.6867 -4.0795 17 7 9.0879 1.7195 -3.7223 18 14 11.6575 0.8624 -4.2801 19 1 12.3184 0.6726 -2.9640 20 1 11.9723 2.2167 -4.8015 21 1 12.1514 -0.1626 -5.2344 22 6 7.4166 -0.0862 -2.6982 23 6 6.1571 -0.3233 -2.2327 24 6 2.0411 -0.7234 -1.2489 25 1 -0.3634 -1.0275 0.0015 26 1 -0.3634 0.5151 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6914 -0.2023 2.1389 29 1 1.6663 -1.7465 1.2541 30 1 3.8834 0.1957 1.2701 31 1 3.6388 -2.4914 0.0834 32 1 5.1129 -1.4944 0.1080 33 1 3.5002 -2.1702 -2.8068 34 1 5.1799 -2.7104 -4.4449 35 1 7.4299 -2.2965 -5.3031 36 1 9.5140 2.5759 -3.5614 37 1 8.0452 0.6444 -2.2110 38 1 5.7883 0.2207 -1.3758 39 1 1.7150 -0.1868 -2.1398 40 1 1.6457 -1.7389 -1.2702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401862785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = 9.467186 kcal Electronic energy + Delta-G solvation = -19221.268852 eV Core-core repulsion = 16420.461893 eV Total energy + Delta-G solvation = -2800.806960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.40063 -37.61842 -34.86068 -33.13086 -32.90205 -30.09224 -29.46176 -27.77147 -26.59253 -24.33705 -23.48544 -21.78067 -21.08476 -20.13505 -19.64470 -17.20623 -16.22112 -15.88364 -15.33114 -15.03266 -14.89858 -14.63096 -13.92976 -13.73817 -12.88026 -12.71830 -12.65052 -12.24088 -12.13556 -12.01350 -11.93727 -11.74479 -11.57866 -11.24010 -11.06139 -11.04020 -10.91551 -10.69059 -10.49234 -10.30626 -9.68505 -9.34639 -9.24593 -8.79113 -8.16019 -7.49235 -6.63114 -6.37030 -4.03231 2.91787 3.10053 3.16080 3.19780 3.35729 4.05725 4.07893 4.45708 4.66128 4.76145 4.81368 4.90362 5.16573 5.34629 5.36007 5.46875 5.48744 5.65599 5.66913 5.82195 5.86451 5.95459 6.02991 6.08476 6.18694 6.25371 6.32001 6.44606 6.88646 6.93102 7.05425 7.20823 7.35825 7.38381 7.56572 7.69299 7.84206 8.15799 8.29499 8.49730 8.70187 8.80445 9.06746 9.15559 10.38433 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035445 B = 0.004170 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.767701 B = 6713.803179 C = 7055.840038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.070 0.930 4 C 0.061 3.939 5 N -0.685 5.685 6 C 0.041 3.959 7 C 0.131 3.869 8 H 0.070 0.930 9 N -0.754 5.754 10 C 0.093 3.907 11 C -0.159 4.159 12 C -0.186 4.186 13 C 0.075 3.925 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.809 5.809 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.123 4.123 23 C -0.164 4.164 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.383 0.617 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.276 0.724 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 -1.846 7.266 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 H 0.089 0.911 4 C -0.069 4.069 5 N -0.313 5.313 6 C -0.090 4.090 7 C 0.022 3.978 8 H 0.088 0.912 9 N -0.388 5.388 10 C -0.004 4.004 11 C -0.181 4.181 12 C -0.207 4.207 13 C 0.072 3.928 14 C -0.499 4.499 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.436 5.436 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.143 4.143 23 C -0.186 4.186 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.215 0.785 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.376 -2.019 7.876 14.808 hybrid contribution 0.394 0.649 -1.117 1.351 sum -11.982 -1.370 6.759 13.825 Atomic orbital electron populations 1.21740 0.94844 1.01773 1.01654 1.21893 0.96358 1.00170 0.96399 0.91138 1.22111 0.88128 1.00544 0.96094 1.60708 1.06911 1.21683 1.41976 1.22621 1.01070 0.97765 0.87511 1.21344 0.92610 0.96524 0.87291 0.91196 1.43841 1.14664 1.46652 1.33671 1.17346 0.85656 1.00012 0.97406 1.19804 0.97208 1.02657 0.98458 1.20551 0.94073 1.04718 1.01314 1.17493 0.92903 0.91523 0.90891 1.19389 0.99716 0.98858 1.31935 0.90939 1.25788 0.99800 0.95302 0.93119 1.69854 1.36806 1.00682 1.36283 0.86392 0.83368 0.78122 0.79293 1.19595 1.20571 1.18822 1.20931 0.94741 1.01838 0.96798 1.20091 0.95954 1.00810 1.01701 1.21896 0.95450 1.00757 0.97770 0.92680 0.92624 0.92736 0.90966 0.91119 0.84245 0.91312 0.90031 0.78460 0.89654 0.89083 0.91364 0.86471 0.89489 0.91640 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.15 0.34 -0.84 16 2 C -0.13 -1.27 2.87 -90.54 -0.26 -1.53 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.06 0.62 5.84 -3.83 -0.02 0.60 16 5 N -0.69 -8.38 6.87 -113.81 -0.78 -9.16 16 6 C 0.04 0.59 6.06 -3.83 -0.02 0.56 16 7 C 0.13 1.91 2.28 -67.85 -0.15 1.76 16 8 H 0.07 1.15 6.45 -51.93 -0.33 0.82 16 9 N -0.75 -12.90 5.22 -51.96 -0.27 -13.17 16 10 C 0.09 2.00 6.65 -83.69 -0.56 1.44 16 11 C -0.16 -3.58 9.82 -39.77 -0.39 -3.97 16 12 C -0.19 -4.64 9.74 -39.27 -0.38 -5.02 16 13 C 0.07 2.03 5.57 -106.80 -0.59 1.44 16 14 C -0.47 -12.80 9.03 -37.87 -0.34 -13.14 16 15 H 0.07 1.92 7.90 -52.49 -0.41 1.51 16 16 C 0.07 1.94 5.14 -17.34 -0.09 1.86 16 17 N -0.81 -21.59 10.98 55.54 0.61 -20.98 16 18 Si 0.90 19.37 29.59 -169.99 -5.03 14.33 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.12 -3.23 8.63 -39.26 -0.34 -3.57 16 23 C -0.16 -3.80 8.77 -39.77 -0.35 -4.15 16 24 C -0.12 -1.42 4.76 -26.61 -0.13 -1.55 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.34 3.97 8.86 -39.29 -0.35 3.62 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.34 7.68 -51.93 -0.40 0.95 16 33 H 0.38 5.92 8.60 -40.82 -0.35 5.57 16 34 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.12 3.20 6.19 -52.49 -0.33 2.87 16 38 H 0.09 1.85 6.05 -52.49 -0.32 1.53 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -27.71 317.75 -10.25 -37.96 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.28 Total: 12.35 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -3.29 Total: -26.12 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.44 Total: -43.31 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.71 -10.25 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401862785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.423 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds