Wall clock time and date at job start Mon Mar 30 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.50982 * 2 1 4 4 C 1.53040 * 109.53902 * 120.09651 * 2 1 3 5 5 N 1.46846 * 109.52605 * 179.13844 * 4 2 1 6 6 C 1.46852 * 111.19519 * 298.25895 * 5 4 2 7 7 C 1.53032 * 109.52514 * 61.74435 * 6 5 4 8 8 H 1.09000 * 109.53407 * 60.77825 * 7 6 5 9 9 N 1.46501 * 109.50230 * 180.87973 * 7 6 5 10 10 C 1.38859 * 119.99889 * 274.80052 * 9 7 6 11 11 C 1.39563 * 119.84333 * 180.02562 * 10 9 7 12 12 C 1.36337 * 120.16125 * 180.02562 * 11 10 9 13 13 C 1.40885 * 119.83734 * 359.97438 * 12 11 10 14 14 C 1.41138 * 120.15330 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00239 * 334.93742 * 14 13 12 16 16 C 1.39871 * 119.99733 * 154.93693 * 14 13 12 17 17 N 1.30900 * 119.99902 * 342.57032 * 16 14 13 18 18 Si 1.86801 * 119.99901 * 162.57349 * 16 14 13 19 19 H 1.48493 * 109.47039 * 265.59455 * 18 16 14 20 20 H 1.48497 * 109.46882 * 145.59438 * 18 16 14 21 21 H 1.48503 * 109.47139 * 25.59611 * 18 16 14 22 22 C 1.40882 * 119.69103 * 0.27294 * 13 12 11 23 23 C 1.36353 * 119.83175 * 359.46705 * 22 13 12 24 24 C 1.53119 * 109.50257 * 239.91890 * 2 1 3 25 25 H 1.08990 * 109.47437 * 180.08264 * 1 2 3 26 26 H 1.09008 * 109.47128 * 300.08074 * 1 2 3 27 27 H 1.09003 * 109.47286 * 60.07580 * 1 2 3 28 28 H 1.09001 * 109.46281 * 299.15464 * 4 2 1 29 29 H 1.09004 * 109.45764 * 59.13265 * 4 2 1 30 30 H 1.00899 * 111.00301 * 62.35669 * 5 4 2 31 31 H 1.09003 * 109.46042 * 301.71976 * 6 5 4 32 32 H 1.09003 * 109.46049 * 181.76269 * 6 5 4 33 33 H 0.96999 * 120.00402 * 94.80461 * 9 7 6 34 34 H 1.08004 * 119.91796 * 0.02562 * 11 10 9 35 35 H 1.08011 * 120.07952 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00217 * 179.97438 * 17 16 14 37 37 H 1.07993 * 120.08471 * 179.72770 * 22 13 12 38 38 H 1.07993 * 119.91631 * 180.27298 * 23 22 13 39 39 H 1.08999 * 109.52235 * 62.46208 * 24 2 1 40 40 H 1.08997 * 109.57319 * 302.30193 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0418 -0.7232 1.2478 5 7 3.5101 -0.7411 1.2372 6 6 4.0237 -1.4716 0.0714 7 6 3.5711 -0.7707 -1.2115 8 1 3.9672 0.2445 -1.2313 9 7 4.0662 -1.5117 -2.3744 10 6 5.3455 -1.2712 -2.8576 11 6 5.8136 -1.9786 -3.9659 12 6 7.0689 -1.7481 -4.4455 13 6 7.8938 -0.7927 -3.8198 14 6 9.1942 -0.5483 -4.3110 15 1 9.7149 -1.3149 -4.8656 16 6 9.8086 0.6867 -4.0795 17 7 9.0879 1.7195 -3.7223 18 14 11.6575 0.8624 -4.2801 19 1 12.3184 0.6726 -2.9640 20 1 11.9723 2.2167 -4.8015 21 1 12.1514 -0.1626 -5.2344 22 6 7.4166 -0.0862 -2.6982 23 6 6.1571 -0.3233 -2.2327 24 6 2.0411 -0.7234 -1.2489 25 1 -0.3634 -1.0275 0.0015 26 1 -0.3634 0.5151 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6914 -0.2023 2.1389 29 1 1.6663 -1.7465 1.2541 30 1 3.8834 0.1957 1.2701 31 1 3.6388 -2.4914 0.0834 32 1 5.1129 -1.4944 0.1080 33 1 3.5002 -2.1702 -2.8068 34 1 5.1799 -2.7104 -4.4449 35 1 7.4299 -2.2965 -5.3031 36 1 9.5140 2.5759 -3.5614 37 1 8.0452 0.6444 -2.2110 38 1 5.7883 0.2207 -1.3758 39 1 1.7150 -0.1868 -2.1398 40 1 1.6457 -1.7389 -1.2702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401862785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:05 Heat of formation + Delta-G solvation = -7.434650 kcal Electronic energy + Delta-G solvation = -19222.001771 eV Core-core repulsion = 16420.461893 eV Total energy + Delta-G solvation = -2801.539878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59736 -39.27166 -36.45067 -34.75088 -33.94592 -31.61708 -31.34953 -29.40700 -27.43888 -26.13488 -24.54657 -23.27856 -22.68451 -21.32319 -21.10275 -19.15971 -17.86122 -16.97146 -16.76737 -16.45285 -16.14559 -15.79421 -15.58239 -14.90885 -14.55178 -14.33131 -13.87543 -13.76327 -13.51311 -13.42046 -13.05684 -13.01969 -12.76513 -12.69179 -12.60106 -12.44747 -12.23897 -12.10095 -11.62091 -11.57797 -11.38418 -11.17247 -11.08335 -10.49056 -9.41031 -9.32603 -8.54758 -8.13040 -6.01651 1.09968 1.18004 1.39899 1.52780 1.58366 2.27258 2.77011 2.84218 3.45149 3.71376 3.82894 3.90319 3.99882 4.11761 4.25844 4.43673 4.48996 4.51607 4.54771 4.68599 4.77498 4.85332 4.99145 5.02127 5.06661 5.09419 5.15205 5.22744 5.27354 5.29441 5.43058 5.44995 5.67433 5.79636 5.95475 6.03915 6.18595 6.38930 6.41186 6.66862 6.86820 7.08192 7.14160 7.30973 8.48306 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035445 B = 0.004170 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.767701 B = 6713.803179 C = 7055.840038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.065 0.935 4 C 0.062 3.938 5 N -0.689 5.689 6 C 0.053 3.947 7 C 0.130 3.870 8 H 0.051 0.949 9 N -0.743 5.743 10 C 0.114 3.886 11 C -0.166 4.166 12 C -0.195 4.195 13 C 0.036 3.964 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.032 3.968 17 N -0.843 5.843 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.343 0.657 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.282 0.718 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 -2.321 7.997 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 H 0.083 0.917 4 C -0.067 4.067 5 N -0.317 5.317 6 C -0.079 4.079 7 C 0.022 3.978 8 H 0.069 0.931 9 N -0.378 5.378 10 C 0.015 3.985 11 C -0.188 4.188 12 C -0.215 4.215 13 C 0.033 3.967 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.471 5.471 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.185 1.185 22 C -0.163 4.163 23 C -0.194 4.194 24 C -0.151 4.151 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.255 -2.508 8.625 16.849 hybrid contribution 0.751 0.742 -1.275 1.655 sum -13.505 -1.766 7.350 15.476 Atomic orbital electron populations 1.21701 0.93098 1.02454 1.02319 1.21842 0.97701 0.99495 0.95208 0.91655 1.22195 0.86482 1.01111 0.96919 1.60704 1.08525 1.21815 1.40658 1.22383 0.99397 0.98173 0.87937 1.21486 0.94721 0.95115 0.86469 0.93117 1.43896 1.13032 1.46739 1.34088 1.17434 0.86909 0.98001 0.96154 1.20106 0.96773 1.03254 0.98701 1.20762 0.94976 1.04293 1.01515 1.17809 0.93809 0.93151 0.91953 1.19613 1.00748 0.99730 1.33757 0.91459 1.26602 1.04455 0.94447 0.92431 1.69918 1.38739 1.01222 1.37245 0.85281 0.77147 0.78367 0.79378 1.18987 1.19512 1.18457 1.20851 0.95898 1.02228 0.97282 1.20214 0.95304 1.01534 1.02342 1.21841 0.92773 1.01749 0.98707 0.91988 0.91358 0.92763 0.89217 0.90718 0.83978 0.90941 0.92852 0.76951 0.86435 0.88552 0.90798 0.88503 0.88038 0.91982 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 71.98 0.66 -1.16 16 2 C -0.12 -2.09 2.87 -10.74 -0.03 -2.12 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.06 1.08 5.84 86.33 0.50 1.59 16 5 N -0.69 -15.64 6.87 -513.98 -3.53 -19.17 16 6 C 0.05 1.42 6.06 86.32 0.52 1.94 16 7 C 0.13 3.59 2.28 45.04 0.10 3.69 16 8 H 0.05 1.63 6.45 -2.39 -0.02 1.61 16 9 N -0.74 -24.01 5.22 -318.29 -1.66 -25.67 16 10 C 0.11 4.84 6.65 38.67 0.26 5.10 16 11 C -0.17 -7.31 9.82 22.15 0.22 -7.09 16 12 C -0.20 -9.87 9.74 22.47 0.22 -9.66 16 13 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 14 C -0.51 -28.89 9.03 23.38 0.21 -28.68 16 15 H 0.07 3.73 7.90 -2.91 -0.02 3.70 16 16 C 0.03 1.73 5.14 85.23 0.44 2.16 16 17 N -0.84 -46.58 10.98 21.82 0.24 -46.34 16 18 Si 0.98 40.61 29.59 68.60 2.03 42.65 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 C -0.14 -7.78 8.63 22.48 0.19 -7.59 16 23 C -0.17 -8.10 8.77 22.15 0.19 -7.91 16 24 C -0.11 -2.36 4.76 30.68 0.15 -2.21 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.34 7.56 8.86 -89.69 -0.79 6.77 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.74 7.68 -2.39 -0.02 1.73 16 33 H 0.40 11.07 8.60 -92.71 -0.80 10.27 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.10 4.62 8.06 -2.90 -0.02 4.60 16 36 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.10 5.59 6.19 -2.91 -0.02 5.57 16 38 H 0.10 4.38 6.05 -2.91 -0.02 4.36 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.51 317.75 0.04 -61.47 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.55 Total: 37.11 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 3.52 Total: -50.04 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.95 Total: -91.18 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.65 kcal Total: -61.51 0.04 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401862785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.033 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds