Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47086 * 2 1 4 4 C 1.53001 * 109.47288 * 239.99827 * 2 1 3 5 5 C 1.53934 * 113.73086 * 160.66680 * 4 2 1 6 6 N 1.47958 * 86.17884 * 221.91991 * 5 4 2 7 7 C 1.47964 * 90.76249 * 24.68947 * 6 5 4 8 8 N 1.46500 * 109.46772 * 119.99404 * 2 1 3 9 9 C 1.46507 * 119.99748 * 64.58761 * 8 2 1 10 10 C 1.50700 * 109.46902 * 89.99587 * 9 8 2 11 11 H 1.07994 * 120.00308 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99255 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00533 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99445 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47324 * 59.99990 * 14 12 10 16 16 H 1.48498 * 109.46844 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47160 * 299.99543 * 14 12 10 18 18 C 1.39675 * 120.00056 * 244.57972 * 8 2 1 19 19 C 1.38912 * 120.06935 * 174.23427 * 18 8 2 20 20 C 1.38114 * 119.92199 * 179.77097 * 19 18 8 21 21 C 1.38285 * 120.07055 * 0.50946 * 20 19 18 22 22 C 1.38291 * 120.15072 * 359.74338 * 21 20 19 23 23 C 1.38102 * 120.07392 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47114 * 174.72863 * 1 2 3 25 25 H 1.09004 * 109.47009 * 54.73056 * 1 2 3 26 26 H 1.09000 * 109.47816 * 294.73171 * 1 2 3 27 27 H 1.08998 * 112.93364 * 292.37218 * 4 2 1 28 28 H 1.09003 * 113.76188 * 336.23629 * 5 4 2 29 29 H 1.08996 * 113.76023 * 107.60269 * 5 4 2 30 30 H 1.00902 * 111.00476 * 271.80049 * 6 5 4 31 31 H 1.09002 * 113.75734 * 220.98784 * 7 6 5 32 32 H 1.09005 * 113.75773 * 89.62919 * 7 6 5 33 33 H 1.08999 * 109.46896 * 209.99393 * 9 8 2 34 34 H 1.08995 * 109.46908 * 329.99121 * 9 8 2 35 35 H 0.96996 * 120.00334 * 180.02562 * 13 12 10 36 36 H 1.07998 * 120.04295 * 0.02562 * 19 18 8 37 37 H 1.07993 * 119.96465 * 180.25119 * 20 19 18 38 38 H 1.08000 * 119.92194 * 179.72646 * 21 20 19 39 39 H 1.07998 * 119.96007 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.03536 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5002 -0.3877 -1.6044 6 7 3.0408 -0.3278 -3.0096 7 6 1.6629 -0.0203 -2.5667 8 7 2.0182 -0.6905 1.1963 9 6 1.7490 -2.1190 1.3786 10 6 2.8666 -2.9230 0.7658 11 1 3.6944 -2.4203 0.2880 12 6 2.8317 -4.3006 0.8144 13 7 1.8234 -4.9128 1.3959 14 14 4.2174 -5.2972 0.0554 15 1 5.4994 -4.9472 0.7181 16 1 3.9437 -6.7452 0.2391 17 1 4.3101 -4.9916 -1.3948 18 6 2.7405 0.0130 2.1628 19 6 3.1008 -0.6085 3.3518 20 6 3.8191 0.0886 4.3034 21 6 4.1705 1.4070 4.0781 22 6 3.8089 2.0302 2.8978 23 6 3.0947 1.3375 1.9400 24 1 -0.3633 -1.0233 -0.0944 25 1 -0.3633 0.5934 -0.8391 26 1 -0.3635 0.4299 0.9334 27 1 1.8214 -1.7891 -1.2421 28 1 3.8396 0.5710 -1.2121 29 1 4.1976 -1.2011 -1.4047 30 1 3.0864 -1.2374 -3.4441 31 1 0.8923 -0.5403 -3.1359 32 1 1.4649 1.0459 -2.4559 33 1 1.6817 -2.3430 2.4432 34 1 0.8077 -2.3762 0.8930 35 1 1.7990 -5.8818 1.4304 36 1 2.8231 -1.6368 3.5301 37 1 4.1031 -0.3951 5.2263 38 1 4.7284 1.9511 4.8258 39 1 4.0846 3.0601 2.7252 40 1 2.8123 1.8250 1.0186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686265791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = 67.867427 kcal Electronic energy + Delta-G solvation = -20203.870100 eV Core-core repulsion = 17405.595565 eV Total energy + Delta-G solvation = -2798.274535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73735 -38.44167 -35.74547 -32.88757 -31.34359 -30.24710 -28.72927 -26.40154 -26.32521 -25.43974 -23.30837 -22.16718 -21.16633 -19.98819 -18.95182 -17.07617 -16.59263 -16.02189 -15.25762 -14.95051 -14.36297 -14.16785 -13.90268 -13.47930 -13.02020 -12.77964 -12.73839 -12.47830 -12.15671 -12.04545 -11.89227 -11.77044 -11.35887 -11.29818 -10.91258 -10.77233 -10.67486 -10.34366 -10.20202 -10.10300 -9.89148 -9.64706 -8.91775 -8.53253 -8.28309 -8.18064 -6.48663 -6.04372 -4.19521 2.09342 2.32140 3.22537 3.28582 3.31447 3.98327 4.34257 4.42292 4.57982 4.96044 5.14728 5.18487 5.36994 5.52908 5.58701 5.67646 5.76945 5.79553 5.83247 5.92920 6.01971 6.10384 6.18906 6.23172 6.29947 6.31369 6.34961 6.47737 6.56249 6.64580 6.80786 6.98773 7.08501 7.17320 7.26152 7.37357 7.57163 7.61068 7.78884 8.14323 8.27536 8.50176 8.89393 9.46377 10.92109 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.009504 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.919170 B = 2945.418029 C = 4140.080618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.078 0.922 4 C -0.152 4.152 5 C 0.030 3.970 6 N -0.666 5.666 7 C 0.018 3.982 8 N -0.605 5.605 9 C 0.251 3.749 10 C -0.525 4.525 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.243 3.757 19 C -0.190 4.190 20 C -0.076 4.076 21 C -0.206 4.206 22 C -0.077 4.077 23 C -0.223 4.223 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.334 0.666 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 9.758 -1.727 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 H 0.096 0.904 4 C -0.172 4.172 5 C -0.100 4.100 6 N -0.292 5.292 7 C -0.113 4.113 8 N -0.310 5.310 9 C 0.131 3.869 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.718 3.282 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.137 3.863 19 C -0.212 4.212 20 C -0.095 4.095 21 C -0.227 4.227 22 C -0.096 4.096 23 C -0.246 4.246 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.371 10.137 -2.203 10.380 hybrid contribution 0.398 -1.684 0.070 1.732 sum 0.028 8.453 -2.133 8.718 Atomic orbital electron populations 1.22153 0.96229 1.02424 1.01101 1.20874 0.93183 0.95641 0.85031 0.90434 1.24586 0.96012 1.02713 0.93917 1.23547 0.96702 1.01530 0.88197 1.65080 1.12330 1.33891 1.17930 1.23660 0.91930 1.00785 0.94904 1.47173 1.55567 1.10142 1.18083 1.19203 0.96300 0.73899 0.97476 1.21558 1.07066 0.90819 1.36962 0.92072 1.24943 0.95840 0.97781 0.95463 1.69911 1.30424 1.09372 1.43602 0.86677 0.82751 0.79068 0.79684 1.20146 1.21277 1.20343 1.17905 0.89364 0.90470 0.88600 1.20884 1.05099 1.01379 0.93862 1.20816 0.96539 0.94112 0.98023 1.20648 1.07429 0.95848 0.98738 1.20676 0.96911 0.98399 0.93615 1.20592 1.08215 0.94611 1.01132 0.91977 0.92542 0.92786 0.86724 0.89525 0.90796 0.85160 0.91472 0.89292 0.94903 0.95225 0.92664 0.85318 0.87215 0.87722 0.87475 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.93 37.16 0.33 -2.10 16 2 C 0.16 2.63 2.35 -67.93 -0.16 2.47 16 3 H 0.08 1.21 5.19 -51.93 -0.27 0.94 16 4 C -0.15 -2.52 2.57 -89.69 -0.23 -2.75 16 5 C 0.03 0.50 8.20 -2.77 -0.02 0.47 16 6 N -0.67 -10.08 8.55 -117.04 -1.00 -11.08 16 7 C 0.02 0.25 7.80 -2.77 -0.02 0.23 16 8 N -0.60 -11.96 2.52 -165.54 -0.42 -12.38 16 9 C 0.25 5.89 4.39 -5.19 -0.02 5.86 16 10 C -0.53 -13.31 7.66 -34.44 -0.26 -13.57 16 11 H 0.06 1.57 6.53 -52.49 -0.34 1.23 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 14 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.24 4.76 6.54 -83.79 -0.55 4.21 16 19 C -0.19 -3.78 9.25 -39.38 -0.36 -4.14 16 20 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 21 C -0.21 -3.28 10.04 -39.54 -0.40 -3.68 16 22 C -0.08 -1.22 10.04 -39.61 -0.40 -1.62 16 23 C -0.22 -3.84 9.31 -39.39 -0.37 -4.21 16 24 H 0.06 1.03 7.04 -51.93 -0.37 0.67 16 25 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.11 2.27 6.63 -51.93 -0.34 1.93 16 28 H 0.09 1.42 8.02 -51.93 -0.42 1.00 16 29 H 0.07 1.37 7.27 -51.93 -0.38 0.99 16 30 H 0.33 4.86 8.89 -39.29 -0.35 4.52 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.03 0.84 5.99 -51.93 -0.31 0.53 16 34 H 0.03 0.74 6.78 -51.93 -0.35 0.39 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.13 2.80 6.03 -52.49 -0.32 2.48 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.77 5.74 -52.49 -0.30 1.47 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -26.77 316.52 -9.71 -36.48 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.82 Total: 9.55 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -2.96 Total: -19.00 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.68 Total: -47.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.77 -9.71 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686265791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.347 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds