Wall clock time and date at job start Mon Mar 30 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47086 * 2 1 4 4 C 1.53001 * 109.47288 * 239.99827 * 2 1 3 5 5 C 1.53934 * 113.73086 * 160.66680 * 4 2 1 6 6 N 1.47958 * 86.17884 * 221.91991 * 5 4 2 7 7 C 1.47964 * 90.76249 * 24.68947 * 6 5 4 8 8 N 1.46500 * 109.46772 * 119.99404 * 2 1 3 9 9 C 1.46507 * 119.99748 * 64.58761 * 8 2 1 10 10 C 1.50700 * 109.46902 * 89.99587 * 9 8 2 11 11 H 1.07994 * 120.00308 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99255 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00533 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99445 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47324 * 59.99990 * 14 12 10 16 16 H 1.48498 * 109.46844 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47160 * 299.99543 * 14 12 10 18 18 C 1.39675 * 120.00056 * 244.57972 * 8 2 1 19 19 C 1.38912 * 120.06935 * 174.23427 * 18 8 2 20 20 C 1.38114 * 119.92199 * 179.77097 * 19 18 8 21 21 C 1.38285 * 120.07055 * 0.50946 * 20 19 18 22 22 C 1.38291 * 120.15072 * 359.74338 * 21 20 19 23 23 C 1.38102 * 120.07392 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47114 * 174.72863 * 1 2 3 25 25 H 1.09004 * 109.47009 * 54.73056 * 1 2 3 26 26 H 1.09000 * 109.47816 * 294.73171 * 1 2 3 27 27 H 1.08998 * 112.93364 * 292.37218 * 4 2 1 28 28 H 1.09003 * 113.76188 * 336.23629 * 5 4 2 29 29 H 1.08996 * 113.76023 * 107.60269 * 5 4 2 30 30 H 1.00902 * 111.00476 * 271.80049 * 6 5 4 31 31 H 1.09002 * 113.75734 * 220.98784 * 7 6 5 32 32 H 1.09005 * 113.75773 * 89.62919 * 7 6 5 33 33 H 1.08999 * 109.46896 * 209.99393 * 9 8 2 34 34 H 1.08995 * 109.46908 * 329.99121 * 9 8 2 35 35 H 0.96996 * 120.00334 * 180.02562 * 13 12 10 36 36 H 1.07998 * 120.04295 * 0.02562 * 19 18 8 37 37 H 1.07993 * 119.96465 * 180.25119 * 20 19 18 38 38 H 1.08000 * 119.92194 * 179.72646 * 21 20 19 39 39 H 1.07998 * 119.96007 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.03536 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5002 -0.3877 -1.6044 6 7 3.0408 -0.3278 -3.0096 7 6 1.6629 -0.0203 -2.5667 8 7 2.0182 -0.6905 1.1963 9 6 1.7490 -2.1190 1.3786 10 6 2.8666 -2.9230 0.7658 11 1 3.6944 -2.4203 0.2880 12 6 2.8317 -4.3006 0.8144 13 7 1.8234 -4.9128 1.3959 14 14 4.2174 -5.2972 0.0554 15 1 5.4994 -4.9472 0.7181 16 1 3.9437 -6.7452 0.2391 17 1 4.3101 -4.9916 -1.3948 18 6 2.7405 0.0130 2.1628 19 6 3.1008 -0.6085 3.3518 20 6 3.8191 0.0886 4.3034 21 6 4.1705 1.4070 4.0781 22 6 3.8089 2.0302 2.8978 23 6 3.0947 1.3375 1.9400 24 1 -0.3633 -1.0233 -0.0944 25 1 -0.3633 0.5934 -0.8391 26 1 -0.3635 0.4299 0.9334 27 1 1.8214 -1.7891 -1.2421 28 1 3.8396 0.5710 -1.2121 29 1 4.1976 -1.2011 -1.4047 30 1 3.0864 -1.2374 -3.4441 31 1 0.8923 -0.5403 -3.1359 32 1 1.4649 1.0459 -2.4559 33 1 1.6817 -2.3430 2.4432 34 1 0.8077 -2.3762 0.8930 35 1 1.7990 -5.8818 1.4304 36 1 2.8231 -1.6368 3.5301 37 1 4.1031 -0.3951 5.2263 38 1 4.7284 1.9511 4.8258 39 1 4.0846 3.0601 2.7252 40 1 2.8123 1.8250 1.0186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686265791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:04 Heat of formation + Delta-G solvation = 52.065956 kcal Electronic energy + Delta-G solvation = -20204.555303 eV Core-core repulsion = 17405.595565 eV Total energy + Delta-G solvation = -2798.959738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08007 -39.77984 -37.19788 -34.83594 -32.73851 -31.63433 -30.37787 -28.02263 -27.63629 -26.67338 -25.05924 -23.56527 -22.56620 -21.33877 -20.35783 -18.56504 -18.48289 -17.33678 -16.86163 -16.47586 -15.93077 -15.57003 -15.27974 -14.79827 -14.50786 -14.41840 -14.17648 -13.79731 -13.63267 -13.41693 -13.18698 -13.17130 -13.00132 -12.96459 -12.55119 -12.45831 -12.06794 -11.99730 -11.79516 -11.53112 -11.42935 -11.16184 -10.59741 -10.47864 -9.65072 -9.42949 -8.32636 -7.75488 -6.29469 0.72227 0.95218 1.34082 1.36370 1.43008 2.32894 2.57099 3.10404 3.17774 3.20102 3.68744 3.83226 4.08058 4.27149 4.31081 4.38135 4.50744 4.57197 4.61635 4.71780 4.76769 4.79468 4.85762 4.89063 4.92661 4.99965 5.09277 5.15214 5.18116 5.22152 5.36531 5.38400 5.50190 5.64774 5.75160 5.80423 5.91692 6.15039 6.25929 6.35470 6.58132 6.90781 7.02163 7.40471 8.86939 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.009504 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.919170 B = 2945.418029 C = 4140.080618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.032 3.968 6 N -0.664 5.664 7 C 0.034 3.966 8 N -0.612 5.612 9 C 0.273 3.727 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.013 3.987 13 N -0.928 5.928 14 Si 0.947 3.053 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.218 3.782 19 C -0.223 4.223 20 C -0.081 4.081 21 C -0.200 4.200 22 C -0.072 4.072 23 C -0.221 4.221 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.336 0.664 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.003 0.997 34 H 0.009 0.991 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 12.590 -2.582 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.116 0.884 4 C -0.174 4.174 5 C -0.098 4.098 6 N -0.290 5.290 7 C -0.096 4.096 8 N -0.318 5.318 9 C 0.151 3.849 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.186 4.186 13 N -0.568 5.568 14 Si 0.774 3.226 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.113 3.887 19 C -0.246 4.246 20 C -0.100 4.100 21 C -0.220 4.220 22 C -0.090 4.090 23 C -0.244 4.244 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.021 0.979 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.579 13.001 -3.063 13.369 hybrid contribution 0.133 -2.468 0.411 2.506 sum 0.712 10.532 -2.652 10.884 Atomic orbital electron populations 1.22096 0.95201 1.01512 1.02369 1.21102 0.94004 0.96050 0.83643 0.88437 1.24459 0.96483 1.00816 0.95666 1.23469 0.96058 1.00878 0.89355 1.65113 1.13150 1.34014 1.16722 1.23714 0.91597 1.01825 0.92514 1.47015 1.56570 1.08685 1.19570 1.18631 0.94754 0.76538 0.94967 1.21730 1.07000 0.91075 1.35892 0.92654 1.25656 0.97850 0.98944 0.96116 1.70025 1.32173 1.09438 1.45207 0.85767 0.79951 0.77680 0.79249 1.20251 1.21041 1.19397 1.18182 0.90292 0.91755 0.88475 1.20825 1.07625 1.00444 0.95719 1.21061 0.95850 0.95074 0.97992 1.21060 1.06399 0.95017 0.99529 1.21146 0.95233 0.99960 0.92704 1.20835 1.07860 0.93354 1.02311 0.94390 0.89138 0.93112 0.90623 0.88673 0.93441 0.84987 0.90097 0.87036 0.97941 0.97313 0.92789 0.88822 0.85662 0.84442 0.83650 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.93 71.98 0.64 -3.88 16 2 C 0.16 5.08 2.35 44.99 0.11 5.18 16 3 H 0.10 2.78 5.19 -2.38 -0.01 2.77 16 4 C -0.15 -5.02 2.57 -10.15 -0.03 -5.05 16 5 C 0.03 1.05 8.20 86.41 0.71 1.76 16 6 N -0.66 -18.89 8.55 -524.20 -4.48 -23.37 16 7 C 0.03 0.85 7.80 86.40 0.67 1.52 16 8 N -0.61 -24.88 2.52 -677.65 -1.71 -26.59 16 9 C 0.27 13.62 4.39 85.63 0.38 13.99 16 10 C -0.52 -27.48 7.66 25.60 0.20 -27.29 16 11 H 0.06 2.95 6.53 -2.91 -0.02 2.94 16 12 C 0.01 0.71 5.46 84.66 0.46 1.17 16 13 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 14 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.22 8.57 6.54 38.21 0.25 8.82 16 19 C -0.22 -9.22 9.25 22.40 0.21 -9.01 16 20 C -0.08 -2.75 10.04 22.25 0.22 -2.52 16 21 C -0.20 -5.72 10.04 22.29 0.22 -5.50 16 22 C -0.07 -1.99 10.04 22.25 0.22 -1.77 16 23 C -0.22 -7.09 9.31 22.40 0.21 -6.88 16 24 H 0.04 1.29 7.04 -2.39 -0.02 1.27 16 25 H 0.09 2.01 7.75 -2.39 -0.02 1.99 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 3.10 6.63 -2.39 -0.02 3.08 16 28 H 0.10 2.92 8.02 -2.39 -0.02 2.90 16 29 H 0.05 1.77 7.27 -2.39 -0.02 1.76 16 30 H 0.34 9.40 8.89 -89.69 -0.80 8.60 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.37 8.10 -2.38 -0.02 2.35 16 33 H 0.00 0.15 5.99 -2.39 -0.01 0.13 16 34 H 0.01 0.48 6.78 -2.39 -0.02 0.46 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.09 4.44 6.03 -2.91 -0.02 4.43 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.13 3.64 5.74 -2.91 -0.02 3.62 16 Total: -1.00 -60.39 316.52 0.84 -59.56 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.24 Total: 27.63 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.48 Total: -29.45 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -5.91 Total: -103.39 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -60.39 0.84 -59.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686265791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.625 kcal (2) G-P(sol) polarization free energy of solvation -60.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds