Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48039 * 111.00253 * 2 1 4 4 C 1.51207 * 105.67969 * 212.99386 * 3 2 1 5 5 C 1.38257 * 131.68135 * 197.52290 * 4 3 2 6 6 C 1.38085 * 120.12511 * 179.97438 * 5 4 3 7 7 C 1.38933 * 119.92850 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.07757 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00194 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47121 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47208 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47038 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00367 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99942 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47458 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47383 * 120.00627 * 16 14 12 19 19 H 1.48510 * 109.46995 * 240.00071 * 16 14 12 20 20 C 1.38890 * 119.84263 * 359.97438 * 7 6 5 21 21 C 1.38057 * 119.97091 * 0.02562 * 20 7 6 22 22 C 1.48055 * 110.99894 * 244.98247 * 2 1 3 23 23 H 1.09002 * 109.47401 * 175.01320 * 1 2 3 24 24 H 1.09001 * 109.46874 * 55.01333 * 1 2 3 25 25 H 1.09004 * 109.46970 * 295.01466 * 1 2 3 26 26 H 1.08995 * 110.20857 * 332.04711 * 3 2 1 27 27 H 1.09004 * 110.20531 * 93.94524 * 3 2 1 28 28 H 1.07999 * 119.93956 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.03298 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99743 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47134 * 299.99956 * 9 8 7 32 32 H 1.09002 * 109.47222 * 60.00106 * 9 8 7 33 33 H 1.08999 * 109.46966 * 299.99919 * 10 9 8 34 34 H 1.09002 * 109.47101 * 59.99891 * 10 9 8 35 35 H 1.09002 * 109.46671 * 300.00181 * 11 10 9 36 36 H 1.09000 * 109.46526 * 59.99757 * 11 10 9 37 37 H 0.96998 * 119.99873 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.01344 * 180.02562 * 20 7 6 39 39 H 1.08990 * 110.21036 * 266.05694 * 22 2 1 40 40 H 1.09002 * 110.20074 * 27.87716 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3820 0.0000 4 6 3.2860 1.3259 -0.7928 5 6 4.3576 2.1962 -0.8691 6 6 5.4312 1.9034 -1.6867 7 6 5.4341 0.7324 -2.4343 8 7 6.5187 0.4329 -3.2618 9 6 7.6552 1.3538 -3.3418 10 6 8.6979 0.7940 -4.3116 11 6 9.8852 1.7555 -4.3948 12 6 10.9124 1.2038 -5.3494 13 1 10.7359 0.2619 -5.8474 14 6 12.0771 1.9021 -5.5879 15 7 12.2918 3.0493 -4.9818 16 14 13.3501 1.2186 -6.7719 17 1 12.8724 -0.0767 -7.3188 18 1 13.5569 2.1793 -7.8851 19 1 14.6329 1.0102 -6.0532 20 6 4.3565 -0.1403 -2.3559 21 6 3.2858 0.1577 -1.5368 22 6 1.9996 -0.5845 -1.2525 23 1 -0.3634 -1.0238 -0.0893 24 1 -0.3633 0.5893 -0.8420 25 1 -0.3633 0.4346 0.9313 26 1 1.2910 2.0574 -0.4795 27 1 2.2002 1.7083 1.0205 28 1 4.3554 3.1062 -0.2876 29 1 6.2677 2.5841 -1.7449 30 1 6.5193 -0.3849 -3.7835 31 1 7.3118 2.3247 -3.6989 32 1 8.1014 1.4671 -2.3538 33 1 9.0414 -0.1770 -3.9549 34 1 8.2515 0.6810 -5.2996 35 1 9.5419 2.7267 -4.7511 36 1 10.3314 1.8680 -3.4066 37 1 13.1113 3.5404 -5.1493 38 1 4.3560 -1.0516 -2.9355 39 1 2.2002 -1.6472 -1.1167 40 1 1.2902 -0.4367 -2.0669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689479923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = 25.409090 kcal Electronic energy + Delta-G solvation = -18194.455419 eV Core-core repulsion = 15394.339752 eV Total energy + Delta-G solvation = -2800.115667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37712 -37.89290 -35.51651 -33.52703 -31.73792 -31.40738 -29.81798 -27.71965 -26.60277 -25.50331 -23.21242 -22.50365 -21.30428 -20.43899 -20.23579 -16.73313 -16.57505 -16.16289 -15.86277 -15.45226 -14.81729 -14.68905 -14.42354 -14.02679 -13.52690 -13.42602 -13.14042 -12.99485 -12.73589 -12.30923 -12.28134 -11.75843 -11.71970 -11.61833 -11.39808 -10.95467 -10.81465 -10.62295 -10.56306 -10.04706 -9.64746 -9.50558 -9.14698 -8.98056 -8.54406 -8.40645 -7.14871 -6.05356 -4.08107 1.46526 1.64914 3.27935 3.35561 3.39271 3.61783 3.80004 3.88313 4.41519 4.43683 4.51248 4.99523 5.00394 5.09647 5.24856 5.29689 5.30780 5.36914 5.43953 5.50082 5.54614 5.60269 5.71244 5.75383 5.87685 6.06680 6.09372 6.32904 6.38879 6.48120 6.56204 6.61523 6.71598 6.77741 6.94347 6.95099 7.54318 7.59441 7.71764 7.93267 7.94821 8.35317 8.98651 9.56385 11.06029 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.069604 B = 0.002734 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.176807 B =10237.668918 C =10587.811700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.511 5.511 3 C 0.087 3.913 4 C -0.178 4.178 5 C -0.048 4.048 6 C -0.197 4.197 7 C 0.230 3.770 8 N -0.742 5.742 9 C 0.121 3.879 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.183 4.183 21 C -0.058 4.058 22 C 0.076 3.924 23 H 0.071 0.929 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.398 0.602 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.758 -4.432 8.459 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.234 5.234 3 C -0.041 4.041 4 C -0.181 4.181 5 C -0.067 4.067 6 C -0.220 4.220 7 C 0.124 3.876 8 N -0.369 5.369 9 C -0.003 4.003 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.207 4.207 21 C -0.059 4.059 22 C -0.051 4.051 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.232 0.768 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.314 -4.453 8.949 23.541 hybrid contribution 0.548 -0.119 -1.584 1.680 sum -20.766 -4.571 7.365 22.503 Atomic orbital electron populations 1.22604 0.87425 1.02182 1.01315 1.65197 1.08373 1.15629 1.34199 1.21468 0.92957 0.89714 0.99931 1.20137 0.97329 0.97473 1.03140 1.20158 0.91626 0.97961 0.96935 1.20633 1.00800 0.98343 1.02181 1.17755 0.87230 0.92895 0.89726 1.45024 1.18193 1.25814 1.47820 1.21625 0.85823 0.92592 1.00241 1.21850 0.96304 1.00672 0.96990 1.19033 0.90939 0.93987 0.97399 1.21242 1.02708 1.06422 1.25612 0.92616 1.25032 0.98311 0.94934 0.96227 1.69970 1.26169 1.14303 1.42912 0.86522 0.81452 0.79048 0.80895 1.19757 1.20978 1.20959 1.19770 0.94105 1.01379 1.05403 1.20100 0.94583 0.95509 0.95745 1.21613 0.92937 0.99606 0.90945 0.91022 0.95094 0.90911 0.92944 0.89782 0.86342 0.85507 0.76790 0.92515 0.92474 0.92767 0.92792 0.96346 0.96324 0.92972 0.86439 0.89323 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.35 60.07 0.56 0.66 16 2 N -0.51 -5.24 5.76 -243.19 -1.40 -6.64 16 3 C 0.09 0.90 6.61 -4.10 -0.03 0.87 16 4 C -0.18 -2.23 6.26 -104.27 -0.65 -2.88 16 5 C -0.05 -0.60 10.03 -39.63 -0.40 -1.00 16 6 C -0.20 -2.76 9.31 -39.38 -0.37 -3.13 16 7 C 0.23 3.30 6.65 -83.79 -0.56 2.74 16 8 N -0.74 -10.80 5.73 -58.63 -0.34 -11.13 16 9 C 0.12 2.00 4.91 -4.04 -0.02 1.98 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 C -0.18 -2.40 9.89 -39.41 -0.39 -2.79 16 21 C -0.06 -0.73 6.26 -104.34 -0.65 -1.38 16 22 C 0.08 0.79 6.61 -4.09 -0.03 0.76 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.21 7.91 -51.93 -0.41 -0.20 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.75 6.74 -52.49 -0.35 1.40 16 30 H 0.40 5.23 8.49 -40.82 -0.35 4.88 16 31 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 32 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.55 7.77 -51.93 -0.40 0.14 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -30.27 328.13 -10.80 -41.08 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.51 Total: 0.73 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.22 Total: -19.54 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -1.00 Total: -43.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.27 -10.80 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689479923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.485 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds