Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48039 * 111.00253 * 2 1 4 4 C 1.51207 * 105.67969 * 212.99386 * 3 2 1 5 5 C 1.38257 * 131.68135 * 197.52290 * 4 3 2 6 6 C 1.38085 * 120.12511 * 179.97438 * 5 4 3 7 7 C 1.38933 * 119.92850 * 0.02562 * 6 5 4 8 8 N 1.39669 * 120.07757 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00194 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47121 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47208 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47038 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00367 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99766 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99958 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99942 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47458 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47383 * 120.00627 * 16 14 12 19 19 H 1.48510 * 109.46995 * 240.00071 * 16 14 12 20 20 C 1.38890 * 119.84263 * 359.97438 * 7 6 5 21 21 C 1.38057 * 119.97091 * 0.02562 * 20 7 6 22 22 C 1.48055 * 110.99894 * 244.98247 * 2 1 3 23 23 H 1.09002 * 109.47401 * 175.01320 * 1 2 3 24 24 H 1.09001 * 109.46874 * 55.01333 * 1 2 3 25 25 H 1.09004 * 109.46970 * 295.01466 * 1 2 3 26 26 H 1.08995 * 110.20857 * 332.04711 * 3 2 1 27 27 H 1.09004 * 110.20531 * 93.94524 * 3 2 1 28 28 H 1.07999 * 119.93956 * 0.02562 * 5 4 3 29 29 H 1.08002 * 120.03298 * 180.02562 * 6 5 4 30 30 H 0.97003 * 119.99743 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47134 * 299.99956 * 9 8 7 32 32 H 1.09002 * 109.47222 * 60.00106 * 9 8 7 33 33 H 1.08999 * 109.46966 * 299.99919 * 10 9 8 34 34 H 1.09002 * 109.47101 * 59.99891 * 10 9 8 35 35 H 1.09002 * 109.46671 * 300.00181 * 11 10 9 36 36 H 1.09000 * 109.46526 * 59.99757 * 11 10 9 37 37 H 0.96998 * 119.99873 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.01344 * 180.02562 * 20 7 6 39 39 H 1.08990 * 110.21036 * 266.05694 * 22 2 1 40 40 H 1.09002 * 110.20074 * 27.87716 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3820 0.0000 4 6 3.2860 1.3259 -0.7928 5 6 4.3576 2.1962 -0.8691 6 6 5.4312 1.9034 -1.6867 7 6 5.4341 0.7324 -2.4343 8 7 6.5187 0.4329 -3.2618 9 6 7.6552 1.3538 -3.3418 10 6 8.6979 0.7940 -4.3116 11 6 9.8852 1.7555 -4.3948 12 6 10.9124 1.2038 -5.3494 13 1 10.7359 0.2619 -5.8474 14 6 12.0771 1.9021 -5.5879 15 7 12.2918 3.0493 -4.9818 16 14 13.3501 1.2186 -6.7719 17 1 12.8724 -0.0767 -7.3188 18 1 13.5569 2.1793 -7.8851 19 1 14.6329 1.0102 -6.0532 20 6 4.3565 -0.1403 -2.3559 21 6 3.2858 0.1577 -1.5368 22 6 1.9996 -0.5845 -1.2525 23 1 -0.3634 -1.0238 -0.0893 24 1 -0.3633 0.5893 -0.8420 25 1 -0.3633 0.4346 0.9313 26 1 1.2910 2.0574 -0.4795 27 1 2.2002 1.7083 1.0205 28 1 4.3554 3.1062 -0.2876 29 1 6.2677 2.5841 -1.7449 30 1 6.5193 -0.3849 -3.7835 31 1 7.3118 2.3247 -3.6989 32 1 8.1014 1.4671 -2.3538 33 1 9.0414 -0.1770 -3.9549 34 1 8.2515 0.6810 -5.2996 35 1 9.5419 2.7267 -4.7511 36 1 10.3314 1.8680 -3.4066 37 1 13.1113 3.5404 -5.1493 38 1 4.3560 -1.0516 -2.9355 39 1 2.2002 -1.6472 -1.1167 40 1 1.2902 -0.4367 -2.0669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689479923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = 6.730053 kcal Electronic energy + Delta-G solvation = -18195.265403 eV Core-core repulsion = 15394.339752 eV Total energy + Delta-G solvation = -2800.925650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28989 -38.90572 -36.81503 -35.27932 -33.36284 -32.35944 -30.98503 -28.86648 -27.84201 -26.63059 -24.80910 -23.53732 -22.21404 -21.97006 -21.36924 -18.53804 -17.81569 -17.28676 -16.68276 -16.50766 -16.38575 -16.27678 -15.64425 -14.84892 -14.53498 -14.48661 -14.30543 -14.14840 -13.91816 -13.67213 -13.61841 -13.28044 -12.88028 -12.64326 -12.60327 -12.39993 -12.31317 -12.21439 -11.72947 -11.65739 -11.47308 -11.18636 -10.83840 -10.57521 -9.87230 -9.39328 -8.23146 -8.21928 -6.32807 0.46414 0.63476 1.39742 1.40120 1.53162 2.37726 2.49775 2.87337 3.07762 3.11837 3.54975 3.66559 4.09160 4.16691 4.22311 4.31378 4.36668 4.45092 4.47666 4.57924 4.62042 4.62651 4.69513 4.84134 4.91144 4.95364 5.03430 5.05172 5.09446 5.15718 5.39683 5.47797 5.49050 5.53561 5.69875 5.82404 5.86722 5.91038 6.02710 6.20833 6.40818 6.83368 6.87489 7.36628 8.90188 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.069604 B = 0.002734 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.176807 B =10237.668918 C =10587.811700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.088 3.912 4 C -0.185 4.185 5 C -0.053 4.053 6 C -0.215 4.215 7 C 0.211 3.789 8 N -0.741 5.741 9 C 0.137 3.863 10 C -0.103 4.103 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.061 0.939 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.186 4.186 21 C -0.069 4.069 22 C 0.079 3.921 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.405 0.595 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.059 0.941 35 H -0.005 1.005 36 H -0.005 1.005 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 -5.635 8.334 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.249 5.249 3 C -0.039 4.039 4 C -0.187 4.187 5 C -0.072 4.072 6 C -0.237 4.237 7 C 0.107 3.893 8 N -0.370 5.370 9 C 0.013 3.987 10 C -0.141 4.141 11 C -0.012 4.012 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.209 4.209 21 C -0.070 4.070 22 C -0.049 4.049 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.139 0.861 30 H 0.240 0.760 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.757 -5.672 8.833 25.062 hybrid contribution 0.895 0.278 -1.476 1.748 sum -21.862 -5.395 7.357 23.690 Atomic orbital electron populations 1.22680 0.85660 1.03127 1.02085 1.65218 1.10142 1.15372 1.34153 1.21508 0.92072 0.90304 1.00019 1.20526 0.97962 0.97231 1.03031 1.20389 0.91290 0.98830 0.96737 1.20760 1.01368 0.98560 1.03052 1.17913 0.87585 0.93569 0.90241 1.44757 1.17804 1.25795 1.48612 1.21232 0.85870 0.92629 0.98973 1.21564 0.94988 0.99378 0.98202 1.18930 0.92599 0.94233 0.95434 1.21701 1.03576 1.06717 1.26041 0.92065 1.25988 1.00708 0.95206 0.98068 1.70097 1.27011 1.15696 1.44488 0.85392 0.78449 0.78701 0.78459 1.18563 1.20415 1.20419 1.19955 0.93784 1.01645 1.05547 1.20479 0.95287 0.95947 0.95284 1.21657 0.92003 0.99678 0.91523 0.89989 0.94534 0.89957 0.91784 0.89143 0.84461 0.86124 0.75954 0.93008 0.93076 0.92260 0.92213 0.98626 0.98655 0.92739 0.84926 0.88617 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.35 127.69 1.19 1.34 16 2 N -0.53 -9.52 5.76 -923.30 -5.32 -14.84 16 3 C 0.09 1.64 6.61 85.50 0.57 2.21 16 4 C -0.18 -4.36 6.26 -19.63 -0.12 -4.49 16 5 C -0.05 -1.31 10.03 22.24 0.22 -1.09 16 6 C -0.21 -6.03 9.31 22.40 0.21 -5.83 16 7 C 0.21 5.98 6.65 38.22 0.25 6.23 16 8 N -0.74 -21.29 5.73 -339.42 -1.95 -23.24 16 9 C 0.14 4.62 4.91 86.38 0.42 5.04 16 10 C -0.10 -4.05 5.27 30.60 0.16 -3.89 16 11 C 0.03 1.33 4.97 29.85 0.15 1.48 16 12 C -0.54 -30.50 9.11 25.60 0.23 -30.26 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 16 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.19 -4.66 9.89 22.38 0.22 -4.44 16 21 C -0.07 -1.63 6.26 -19.68 -0.12 -1.75 16 22 C 0.08 1.45 6.61 85.49 0.57 2.01 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.04 0.40 7.91 -2.39 -0.02 0.39 16 25 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.06 1.04 7.69 -2.39 -0.02 1.02 16 27 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.12 3.44 6.74 -2.91 -0.02 3.42 16 30 H 0.40 10.29 8.49 -92.71 -0.79 9.50 16 31 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.05 1.77 7.95 -2.39 -0.02 1.75 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.00 -0.28 8.14 -2.39 -0.02 -0.29 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.14 7.77 -2.39 -0.02 1.12 16 Total: -1.00 -64.47 328.13 -0.31 -64.78 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.23 Total: 16.57 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 4.42 Total: -33.08 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -6.98 Total: -94.27 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.47 -0.31 -64.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689479923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.513 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds