Wall clock time and date at job start Mon Mar 30 2020 07:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48502 * 109.47284 * 275.00050 * 3 2 1 5 5 H 1.48503 * 109.47155 * 35.00224 * 3 2 1 6 6 H 1.48498 * 109.47092 * 155.00218 * 3 2 1 7 7 C 1.40122 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00248 * 185.31767 * 7 2 1 9 9 C 1.46133 * 120.00228 * 5.04261 * 7 2 1 10 10 O 1.21763 * 119.99936 * 354.95940 * 9 7 2 11 11 N 1.34773 * 120.00503 * 174.95787 * 9 7 2 12 12 C 1.39587 * 120.00446 * 184.47880 * 11 9 7 13 13 C 1.39019 * 120.07400 * 325.29820 * 12 11 9 14 14 C 1.38167 * 119.97176 * 179.74445 * 13 12 11 15 15 Cl 1.73599 * 119.93722 * 180.29827 * 14 13 12 16 16 C 1.38461 * 120.12425 * 0.53299 * 14 13 12 17 17 C 1.38484 * 120.14674 * 359.74689 * 16 14 13 18 18 F 1.35099 * 119.98483 * 180.02562 * 17 16 14 19 19 C 1.38475 * 120.02883 * 359.97404 * 17 16 14 20 20 F 1.35104 * 120.06349 * 180.02562 * 19 17 16 21 21 H 0.96997 * 120.00285 * 359.97438 * 1 2 3 22 22 H 0.97004 * 120.00229 * 4.48333 * 11 9 7 23 23 H 1.07999 * 120.01156 * 0.02562 * 13 12 11 24 24 H 1.07992 * 119.92735 * 179.76281 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3821 2.1075 -1.3948 5 1 1.4945 2.6198 0.8031 6 1 3.5867 1.4120 0.5916 7 6 2.0070 -1.2135 -0.0005 8 1 3.0835 -1.2155 0.0861 9 6 1.2807 -2.4766 -0.1123 10 8 0.0630 -2.4807 -0.1126 11 7 1.9584 -3.6369 -0.2152 12 6 1.2678 -4.8333 -0.4159 13 6 0.0201 -5.0235 0.1668 14 6 -0.6640 -6.2065 -0.0375 15 17 -2.2255 -6.4400 0.6843 16 6 -0.1044 -7.2078 -0.8129 17 6 1.1408 -7.0259 -1.3910 18 9 1.6835 -8.0050 -2.1474 19 6 1.8293 -5.8406 -1.1950 20 9 3.0439 -5.6622 -1.7592 21 1 -0.4850 0.8400 0.0004 22 1 2.9262 -3.6408 -0.1498 23 1 -0.4163 -4.2452 0.7753 24 1 -0.6402 -8.1326 -0.9673 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691328690.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:05 Heat of formation + Delta-G solvation = -112.289995 kcal Electronic energy + Delta-G solvation = -16766.548616 eV Core-core repulsion = 13341.723558 eV Total energy + Delta-G solvation = -3424.825058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.011 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.22257 -48.27733 -39.35762 -37.32974 -36.13624 -33.66537 -32.63567 -29.85722 -29.34413 -26.48823 -23.11883 -22.51117 -20.27923 -18.22801 -17.68892 -17.10263 -16.63279 -16.09858 -15.52796 -15.29779 -14.91413 -14.72292 -14.18453 -14.09462 -13.48236 -12.94396 -12.75438 -12.47898 -12.21356 -11.61778 -11.36068 -11.25309 -10.92369 -10.86637 -10.78661 -10.43741 -9.62504 -9.05979 -8.44132 -7.96027 -7.57739 -6.51408 -4.98786 1.06467 1.26248 2.18435 2.99640 3.07642 3.11223 3.50381 3.77543 3.99421 4.27400 4.33686 4.54883 4.94792 5.24981 5.37615 5.45968 5.79192 5.90423 6.28334 6.56316 6.79092 7.15097 7.42053 7.63543 7.94200 8.68913 8.91907 10.13742 10.38255 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.006277 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.481520 B = 4459.345077 C = 5510.189675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.086 3.914 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.539 3.461 10 O -0.555 6.555 11 N -0.687 5.687 12 C 0.204 3.796 13 C -0.108 4.108 14 C 0.004 3.996 15 Cl -0.059 7.059 16 C -0.168 4.168 17 C 0.099 3.901 18 F -0.129 7.129 19 C 0.008 3.992 20 F -0.129 7.129 21 H 0.275 0.725 22 H 0.402 0.598 23 H 0.171 0.829 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -9.628 0.242 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.347 3.653 10 O -0.437 6.437 11 N -0.329 5.329 12 C 0.101 3.899 13 C -0.130 4.130 14 C -0.023 4.023 15 Cl -0.030 7.030 16 C -0.189 4.189 17 C 0.078 3.922 18 F -0.108 7.108 19 C -0.016 4.016 20 F -0.108 7.108 21 H 0.086 0.914 22 H 0.236 0.764 23 H 0.189 0.811 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.136 -9.404 0.273 9.409 hybrid contribution 1.118 0.550 -0.300 1.281 sum 1.254 -8.855 -0.027 8.943 Atomic orbital electron populations 1.69966 1.07224 1.28218 1.32660 1.25764 0.94775 1.00697 0.92433 0.86196 0.80187 0.80578 0.78994 1.19511 1.20130 1.18609 1.20825 0.94384 0.88672 1.52778 0.90591 1.18516 0.87539 0.81712 0.77529 1.90639 1.13480 1.85232 1.54323 1.44276 1.10329 1.04259 1.74076 1.17575 0.93216 0.86614 0.92460 1.21423 0.94149 0.96504 1.00878 1.20383 0.88475 0.95021 0.98471 1.98362 1.25726 1.96915 1.81968 1.20570 0.94887 1.01182 1.02289 1.16994 0.93190 0.85430 0.96590 1.91500 1.85558 1.60210 1.73491 1.17511 0.85170 0.96252 1.02683 1.91469 1.40408 1.95663 1.83233 0.91433 0.76370 0.81131 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.81 11.84 55.55 0.66 -20.15 14 2 C 0.09 2.20 5.50 -17.35 -0.10 2.10 14 3 Si 0.92 18.68 29.56 -169.99 -5.03 13.66 14 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 7 C -0.53 -13.76 9.53 -35.71 -0.34 -14.10 14 8 H 0.08 1.79 7.85 -52.49 -0.41 1.37 14 9 C 0.54 14.05 7.58 -13.10 -0.10 13.95 14 10 O -0.55 -16.11 12.44 5.13 0.06 -16.05 14 11 N -0.69 -14.67 5.21 -11.16 -0.06 -14.73 14 12 C 0.20 4.04 6.31 -83.69 -0.53 3.51 14 13 C -0.11 -2.09 8.47 -39.32 -0.33 -2.42 14 14 C 0.00 0.07 6.32 -39.53 -0.25 -0.18 14 15 Cl -0.06 -0.86 28.95 -51.86 -1.50 -2.37 14 16 C -0.17 -2.48 9.81 -39.41 -0.39 -2.86 14 17 C 0.10 1.59 7.30 -39.40 -0.29 1.30 14 18 F -0.13 -2.00 17.18 2.25 0.04 -1.96 14 19 C 0.01 0.14 7.32 -39.14 -0.29 -0.14 14 20 F -0.13 -2.31 16.86 2.25 0.04 -2.27 14 21 H 0.27 6.87 8.29 -40.82 -0.34 6.53 14 22 H 0.40 7.50 8.63 -40.82 -0.35 7.14 14 23 H 0.17 3.76 6.19 -52.49 -0.32 3.44 14 24 H 0.15 1.75 8.06 -52.49 -0.42 1.32 14 LS Contribution 250.51 15.07 3.78 3.78 Total: -1.00 -28.79 250.51 -5.26 -34.05 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -0.65 Total: 4.89 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.61 Total: 1.16 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.60 Total: -34.88 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.06 Total: -16.05 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.08 Total: -4.24 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.79 -5.26 -34.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691328690.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.239 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds