Wall clock time and date at job start Mon Mar 30 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47907 * 110.99821 * 2 1 4 4 C 1.53991 * 107.05506 * 145.84700 * 3 2 1 5 5 C 1.54589 * 105.14370 * 358.77387 * 4 3 2 6 6 H 1.09000 * 110.72900 * 96.57882 * 5 4 3 7 7 C 1.53007 * 110.72565 * 219.68950 * 5 4 3 8 8 N 1.46500 * 109.47031 * 182.54948 * 7 5 4 9 9 C 1.39687 * 119.99777 * 180.27209 * 8 7 5 10 10 C 1.39334 * 119.94801 * 359.45298 * 9 8 7 11 11 C 1.38478 * 120.41867 * 179.72167 * 10 9 8 12 12 C 1.37690 * 120.32622 * 0.55208 * 11 10 9 13 13 C 1.40752 * 119.89173 * 359.72041 * 12 11 10 14 14 C 1.41411 * 120.20344 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00440 * 24.42451 * 14 13 12 16 16 C 1.39933 * 119.99374 * 204.42801 * 14 13 12 17 17 N 1.30830 * 120.00480 * 17.88181 * 16 14 13 18 18 Si 1.86801 * 119.99880 * 197.88211 * 16 14 13 19 19 H 1.48506 * 109.46861 * 59.99804 * 18 16 14 20 20 H 1.48494 * 109.47320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47069 * 300.00361 * 18 16 14 22 22 C 1.38272 * 119.95128 * 179.72147 * 9 8 7 23 23 C 1.48726 * 111.04394 * 117.57558 * 2 1 3 24 24 H 1.08995 * 109.47419 * 60.13005 * 1 2 3 25 25 H 1.09005 * 109.46826 * 180.12428 * 1 2 3 26 26 H 1.09001 * 109.46899 * 300.12508 * 1 2 3 27 27 H 1.09000 * 109.91208 * 26.49027 * 3 2 1 28 28 H 1.08997 * 110.07907 * 265.28758 * 3 2 1 29 29 H 1.09010 * 110.30580 * 239.85825 * 4 3 2 30 30 H 1.08995 * 110.30728 * 117.69642 * 4 3 2 31 31 H 1.09003 * 109.47219 * 62.54861 * 7 5 4 32 32 H 1.09001 * 109.46412 * 302.54790 * 7 5 4 33 33 H 0.97000 * 119.99739 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.79381 * 0.02562 * 10 9 8 35 35 H 1.08001 * 119.83881 * 180.27988 * 11 10 9 36 36 H 1.08003 * 120.05492 * 179.70466 * 12 11 10 37 37 H 0.96992 * 120.00155 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.16349 * 0.02770 * 22 9 8 39 39 H 1.09000 * 110.83624 * 81.96723 * 23 2 1 40 40 H 1.08998 * 110.58732 * 318.77189 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4493 -0.0929 1.3153 6 1 4.1141 -0.6532 0.6579 7 6 3.9589 -0.1307 2.7575 8 7 4.1497 -1.5229 3.1717 9 6 4.6069 -1.8120 4.4595 10 6 4.8921 -0.7752 5.3455 11 6 5.3405 -1.0508 6.6264 12 6 5.5202 -2.3534 7.0348 13 6 5.2415 -3.4111 6.1489 14 6 5.4233 -4.7514 6.5616 15 1 5.3863 -5.0029 7.6112 16 6 5.6510 -5.7516 5.6099 17 7 6.0415 -5.4300 4.4034 18 14 5.3974 -7.5462 6.0622 19 1 3.9867 -7.7581 6.4749 20 1 5.7025 -8.4008 4.8868 21 1 6.3008 -7.9063 7.1844 22 6 4.7811 -3.1266 4.8513 23 6 2.0031 -0.6426 1.2304 24 1 -0.3634 0.5118 -0.8911 25 1 -0.3633 -1.0277 0.0022 26 1 -0.3633 0.5158 0.8889 27 1 1.2758 2.0561 0.4571 28 1 2.2117 1.7001 -1.0203 29 1 3.2136 2.0430 1.6766 30 1 4.1469 1.6456 0.2023 31 1 3.2306 0.3469 3.4129 32 1 4.9085 0.4007 2.8212 33 1 3.9543 -2.2440 2.5530 34 1 4.7581 0.2498 5.0330 35 1 5.5544 -0.2399 7.3069 36 1 5.8746 -2.5632 8.0332 37 1 6.1990 -6.1234 3.7437 38 1 4.5649 -3.9310 4.1638 39 1 2.0095 -1.7279 1.1295 40 1 1.4245 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691544751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:25 Heat of formation + Delta-G solvation = 18.570717 kcal Electronic energy + Delta-G solvation = -18945.701203 eV Core-core repulsion = 16145.289002 eV Total energy + Delta-G solvation = -2800.412201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.24316 -37.65563 -35.09964 -33.41091 -32.17380 -29.58914 -29.38761 -27.63811 -26.05576 -25.17175 -23.68690 -21.16396 -21.14595 -20.01166 -19.78472 -17.19006 -16.22903 -16.05222 -15.24447 -14.75919 -14.67904 -14.52880 -14.08754 -13.92790 -13.39304 -12.88197 -12.82683 -12.60599 -12.23256 -11.98315 -11.68203 -11.63364 -11.48791 -11.22522 -11.07804 -11.00385 -10.84501 -10.58223 -10.48958 -10.37013 -9.58662 -9.41697 -9.19508 -8.72398 -8.57918 -7.27658 -6.69476 -6.12575 -4.27884 2.91483 3.11167 3.14531 3.26509 3.37848 3.87947 4.00355 4.24538 4.54964 4.66897 4.76310 4.90299 5.12642 5.22174 5.27609 5.40636 5.49424 5.59259 5.67132 5.71414 5.81798 5.86248 5.88875 5.98783 6.13820 6.30175 6.32477 6.61686 6.72200 6.86952 6.91793 7.14666 7.17376 7.41549 7.48158 7.84834 7.99765 8.14341 8.20843 8.52657 8.75097 8.87573 9.04841 9.15811 10.29201 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.004405 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.048268 B = 6354.261992 C = 7167.392881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.036 3.964 4 C -0.124 4.124 5 C -0.102 4.102 6 H 0.087 0.913 7 C 0.148 3.852 8 N -0.760 5.760 9 C 0.216 3.784 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.258 4.258 13 C 0.139 3.861 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.079 3.921 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.232 4.232 23 C 0.042 3.958 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.390 0.610 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.278 0.722 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 8.926 -8.561 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.092 4.092 4 C -0.162 4.162 5 C -0.121 4.121 6 H 0.106 0.894 7 C 0.022 3.978 8 N -0.394 5.394 9 C 0.117 3.883 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.136 3.864 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.256 4.256 23 C -0.086 4.086 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.223 0.777 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.071 8.750 -9.251 14.565 hybrid contribution -0.419 -0.607 0.605 0.954 sum -7.490 8.143 -8.646 14.041 Atomic orbital electron populations 1.22503 0.88029 1.02227 1.00501 1.64728 1.07975 1.14813 1.37509 1.22856 0.95900 0.89949 1.00474 1.22389 0.97620 0.96608 0.99614 1.22301 0.96533 0.96229 0.97039 0.89433 1.21038 0.99171 0.85424 0.92200 1.44402 1.76766 1.04950 1.13280 1.17646 0.93293 0.93920 0.83449 1.19871 1.20968 0.95455 0.95986 1.20280 0.98172 0.95473 0.94601 1.20861 1.14250 0.92454 1.00301 1.17311 0.86075 0.92365 0.90635 1.19525 1.43965 0.91831 0.94306 0.90648 1.25865 0.92219 1.01325 0.94464 1.69855 1.31834 1.35591 1.04528 0.86449 0.79981 0.81843 0.78871 1.18939 1.20470 1.19101 1.20722 1.12798 0.92527 0.99513 1.23338 0.94530 1.00069 0.90648 0.91525 0.91232 0.95436 0.93893 0.90477 0.91087 0.90729 0.93512 0.93134 0.77715 0.89767 0.89703 0.89434 0.91140 0.86537 0.89795 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 60.07 0.56 0.72 16 2 N -0.53 -6.11 5.55 -238.53 -1.32 -7.43 16 3 C 0.04 0.37 6.70 -2.75 -0.02 0.35 16 4 C -0.12 -1.29 6.51 -25.38 -0.17 -1.45 16 5 C -0.10 -1.27 3.09 -88.76 -0.27 -1.55 16 6 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 7 C 0.15 2.26 4.22 -4.04 -0.02 2.25 16 8 N -0.76 -14.44 5.61 -58.68 -0.33 -14.77 16 9 C 0.22 5.07 6.64 -83.86 -0.56 4.52 16 10 C -0.30 -6.91 9.32 -39.09 -0.36 -7.28 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.26 -6.62 9.79 -38.83 -0.38 -7.00 16 13 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 14 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 17 N -0.79 -20.86 10.96 55.55 0.61 -20.25 16 18 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.23 -6.11 8.54 -38.68 -0.33 -6.44 16 23 C 0.04 0.52 5.84 -1.79 -0.01 0.51 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.26 8.01 -51.93 -0.42 -0.15 16 27 H 0.04 0.40 7.73 -51.93 -0.40 0.00 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.71 7.85 -51.92 -0.41 0.30 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.73 7.86 -51.93 -0.41 0.32 16 32 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.39 7.09 8.41 -40.82 -0.34 6.74 16 34 H 0.08 1.75 6.70 -52.49 -0.35 1.40 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -28.48 322.48 -10.59 -39.07 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.40 Total: 9.75 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.98 Total: -25.24 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -1.04 Total: -42.46 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.48 -10.59 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691544751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.638 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds