Wall clock time and date at job start Mon Mar 30 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47907 * 110.99821 * 2 1 4 4 C 1.53991 * 107.05506 * 145.84700 * 3 2 1 5 5 C 1.54589 * 105.14370 * 358.77387 * 4 3 2 6 6 H 1.09000 * 110.72900 * 96.57882 * 5 4 3 7 7 C 1.53007 * 110.72565 * 219.68950 * 5 4 3 8 8 N 1.46500 * 109.47031 * 182.54948 * 7 5 4 9 9 C 1.39687 * 119.99777 * 180.27209 * 8 7 5 10 10 C 1.39334 * 119.94801 * 359.45298 * 9 8 7 11 11 C 1.38478 * 120.41867 * 179.72167 * 10 9 8 12 12 C 1.37690 * 120.32622 * 0.55208 * 11 10 9 13 13 C 1.40752 * 119.89173 * 359.72041 * 12 11 10 14 14 C 1.41411 * 120.20344 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00440 * 24.42451 * 14 13 12 16 16 C 1.39933 * 119.99374 * 204.42801 * 14 13 12 17 17 N 1.30830 * 120.00480 * 17.88181 * 16 14 13 18 18 Si 1.86801 * 119.99880 * 197.88211 * 16 14 13 19 19 H 1.48506 * 109.46861 * 59.99804 * 18 16 14 20 20 H 1.48494 * 109.47320 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47069 * 300.00361 * 18 16 14 22 22 C 1.38272 * 119.95128 * 179.72147 * 9 8 7 23 23 C 1.48726 * 111.04394 * 117.57558 * 2 1 3 24 24 H 1.08995 * 109.47419 * 60.13005 * 1 2 3 25 25 H 1.09005 * 109.46826 * 180.12428 * 1 2 3 26 26 H 1.09001 * 109.46899 * 300.12508 * 1 2 3 27 27 H 1.09000 * 109.91208 * 26.49027 * 3 2 1 28 28 H 1.08997 * 110.07907 * 265.28758 * 3 2 1 29 29 H 1.09010 * 110.30580 * 239.85825 * 4 3 2 30 30 H 1.08995 * 110.30728 * 117.69642 * 4 3 2 31 31 H 1.09003 * 109.47219 * 62.54861 * 7 5 4 32 32 H 1.09001 * 109.46412 * 302.54790 * 7 5 4 33 33 H 0.97000 * 119.99739 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.79381 * 0.02562 * 10 9 8 35 35 H 1.08001 * 119.83881 * 180.27988 * 11 10 9 36 36 H 1.08003 * 120.05492 * 179.70466 * 12 11 10 37 37 H 0.96992 * 120.00155 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.16349 * 0.02770 * 22 9 8 39 39 H 1.09000 * 110.83624 * 81.96723 * 23 2 1 40 40 H 1.08998 * 110.58732 * 318.77189 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4493 -0.0929 1.3153 6 1 4.1141 -0.6532 0.6579 7 6 3.9589 -0.1307 2.7575 8 7 4.1497 -1.5229 3.1717 9 6 4.6069 -1.8120 4.4595 10 6 4.8921 -0.7752 5.3455 11 6 5.3405 -1.0508 6.6264 12 6 5.5202 -2.3534 7.0348 13 6 5.2415 -3.4111 6.1489 14 6 5.4233 -4.7514 6.5616 15 1 5.3863 -5.0029 7.6112 16 6 5.6510 -5.7516 5.6099 17 7 6.0415 -5.4300 4.4034 18 14 5.3974 -7.5462 6.0622 19 1 3.9867 -7.7581 6.4749 20 1 5.7025 -8.4008 4.8868 21 1 6.3008 -7.9063 7.1844 22 6 4.7811 -3.1266 4.8513 23 6 2.0031 -0.6426 1.2304 24 1 -0.3634 0.5118 -0.8911 25 1 -0.3633 -1.0277 0.0022 26 1 -0.3633 0.5158 0.8889 27 1 1.2758 2.0561 0.4571 28 1 2.2117 1.7001 -1.0203 29 1 3.2136 2.0430 1.6766 30 1 4.1469 1.6456 0.2023 31 1 3.2306 0.3469 3.4129 32 1 4.9085 0.4007 2.8212 33 1 3.9543 -2.2440 2.5530 34 1 4.7581 0.2498 5.0330 35 1 5.5544 -0.2399 7.3069 36 1 5.8746 -2.5632 8.0332 37 1 6.1990 -6.1234 3.7437 38 1 4.5649 -3.9310 4.1638 39 1 2.0095 -1.7279 1.1295 40 1 1.4245 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691544751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:24 Heat of formation + Delta-G solvation = 1.458316 kcal Electronic energy + Delta-G solvation = -18946.443252 eV Core-core repulsion = 16145.289002 eV Total energy + Delta-G solvation = -2801.154250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28456 -39.37783 -36.65102 -35.20516 -33.38754 -31.34025 -30.73941 -29.00591 -27.23410 -27.03960 -24.88229 -22.93019 -22.12439 -21.55482 -21.11974 -19.06991 -17.64057 -17.23221 -16.71506 -16.47014 -16.05469 -15.70582 -15.63761 -14.86068 -14.57944 -14.49344 -14.32737 -14.01841 -13.85521 -13.40382 -13.04837 -12.85883 -12.74410 -12.53668 -12.46898 -12.31162 -12.23444 -12.08973 -11.83420 -11.51697 -11.47147 -11.29445 -11.04634 -10.47916 -9.44559 -9.24639 -8.61200 -7.89959 -6.31480 1.10196 1.34211 1.38858 1.50094 1.60260 2.23569 2.78095 2.84074 3.02543 3.62498 3.72074 3.87615 3.91655 4.24346 4.37706 4.42459 4.48200 4.52437 4.53031 4.67901 4.71878 4.77797 4.84408 4.91438 4.95708 4.99876 5.03397 5.14759 5.20764 5.29546 5.31913 5.46173 5.61194 5.84917 5.96786 6.03956 6.11726 6.22309 6.27047 6.58884 6.94887 7.05855 7.07463 7.25680 8.39059 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.004405 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.048268 B = 6354.261992 C = 7167.392881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.539 5.539 3 C 0.036 3.964 4 C -0.119 4.119 5 C -0.095 4.095 6 H 0.081 0.919 7 C 0.149 3.851 8 N -0.754 5.754 9 C 0.219 3.781 10 C -0.303 4.303 11 C -0.063 4.063 12 C -0.286 4.286 13 C 0.109 3.891 14 C -0.506 4.506 15 H 0.072 0.928 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.261 4.261 23 C 0.044 3.956 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.392 0.608 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.285 0.715 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 10.043 -9.452 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.092 4.092 4 C -0.157 4.157 5 C -0.114 4.114 6 H 0.100 0.900 7 C 0.024 3.976 8 N -0.386 5.386 9 C 0.118 3.882 10 C -0.326 4.326 11 C -0.081 4.081 12 C -0.307 4.307 13 C 0.106 3.894 14 C -0.536 4.536 15 H 0.090 0.910 16 C -0.176 4.176 17 N -0.448 5.448 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.285 4.285 23 C -0.084 4.084 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.225 0.775 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.631 9.903 -10.172 16.118 hybrid contribution -0.272 -0.817 0.817 1.187 sum -7.902 9.087 -9.355 15.249 Atomic orbital electron populations 1.22551 0.87004 1.02451 1.01324 1.64729 1.09101 1.15833 1.36655 1.22922 0.95785 0.89248 1.01216 1.22395 0.98386 0.94805 1.00129 1.22191 0.96188 0.98046 0.94980 0.90018 1.21199 0.99401 0.83024 0.93982 1.44523 1.75443 1.06889 1.11728 1.17771 0.92093 0.93152 0.85177 1.20220 1.20061 0.96597 0.95705 1.20652 0.96624 0.95497 0.95357 1.21029 1.15865 0.93313 1.00494 1.17707 0.86755 0.93253 0.91685 1.19796 1.46158 0.92964 0.94704 0.91016 1.26701 0.91160 1.05690 0.94094 1.69914 1.32053 1.37327 1.05498 0.85317 0.79867 0.75895 0.78968 1.18649 1.19137 1.18438 1.20661 1.15001 0.93481 0.99339 1.23241 0.94562 0.99566 0.91050 0.89999 0.91414 0.95246 0.92972 0.89333 0.90312 0.89496 0.93213 0.92959 0.77471 0.86956 0.86363 0.89223 0.90433 0.88256 0.90959 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.40 127.69 1.20 1.47 16 2 N -0.54 -11.52 5.55 -908.59 -5.04 -16.56 16 3 C 0.04 0.63 6.70 86.44 0.58 1.21 16 4 C -0.12 -2.14 6.51 31.47 0.20 -1.94 16 5 C -0.09 -2.22 3.09 -9.59 -0.03 -2.25 16 6 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 7 C 0.15 4.30 4.22 86.38 0.36 4.67 16 8 N -0.75 -28.28 5.61 -339.57 -1.90 -30.19 16 9 C 0.22 10.32 6.64 38.16 0.25 10.57 16 10 C -0.30 -13.54 9.32 22.59 0.21 -13.33 16 11 C -0.06 -2.88 10.02 22.20 0.22 -2.66 16 12 C -0.29 -14.94 9.79 22.75 0.22 -14.72 16 13 C 0.11 6.20 5.57 -21.31 -0.12 6.08 16 14 C -0.51 -28.68 9.05 23.46 0.21 -28.47 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 2.01 5.14 85.25 0.44 2.45 16 17 N -0.82 -44.37 10.96 21.82 0.24 -44.13 16 18 Si 0.98 39.53 29.60 68.60 2.03 41.56 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 C -0.26 -14.18 8.54 22.85 0.20 -13.98 16 23 C 0.04 1.05 5.84 86.61 0.51 1.55 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.03 0.51 8.01 -2.39 -0.02 0.49 16 27 H 0.05 0.83 7.73 -2.39 -0.02 0.81 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.32 7.85 -2.38 -0.02 1.30 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.44 7.86 -2.39 -0.02 1.43 16 32 H 0.05 1.53 7.93 -2.39 -0.02 1.51 16 33 H 0.39 14.35 8.41 -92.71 -0.78 13.57 16 34 H 0.11 4.33 6.70 -2.91 -0.02 4.31 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 38 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.06 7.81 -2.39 -0.02 1.04 16 Total: -1.00 -62.17 322.48 0.02 -62.15 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.24 Total: 36.50 kcal Atomic # 6 Polarization: -53.80 SS G_CDS: 4.46 Total: -49.34 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -6.70 Total: -90.87 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -62.17 0.02 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691544751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.609 kcal (2) G-P(sol) polarization free energy of solvation -62.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds