Wall clock time and date at job start Mon Mar 30 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47845 * 111.00079 * 2 1 4 4 C 1.54904 * 104.79872 * 146.36451 * 3 2 1 5 5 C 1.55145 * 101.65401 * 322.93177 * 4 3 2 6 6 H 1.09001 * 110.70042 * 277.27596 * 5 4 3 7 7 C 1.52995 * 110.85863 * 154.10475 * 5 4 3 8 8 N 1.46494 * 109.47145 * 177.50598 * 7 5 4 9 9 C 1.38861 * 120.00191 * 180.02562 * 8 7 5 10 10 C 1.39562 * 119.83937 * 359.72343 * 9 8 7 11 11 C 1.36343 * 120.15796 * 179.75912 * 10 9 8 12 12 C 1.40882 * 119.83620 * 0.53814 * 11 10 9 13 13 C 1.41139 * 120.15271 * 179.73673 * 12 11 10 14 14 H 1.08000 * 120.00557 * 334.50983 * 13 12 11 15 15 C 1.39869 * 119.99571 * 154.50542 * 13 12 11 16 16 N 1.30897 * 120.00530 * 343.06780 * 15 13 12 17 17 Si 1.86804 * 119.99583 * 163.06487 * 15 13 12 18 18 H 1.48499 * 109.47282 * 60.00198 * 17 15 13 19 19 H 1.48507 * 109.46995 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47428 * 299.99796 * 17 15 13 21 21 C 1.40880 * 119.69259 * 359.71858 * 12 11 10 22 22 C 1.36343 * 119.83253 * 359.97438 * 21 12 11 23 23 C 1.47441 * 111.00054 * 120.84274 * 2 1 3 24 24 H 1.08997 * 109.46957 * 299.15620 * 1 2 3 25 25 H 1.08997 * 109.47253 * 59.15871 * 1 2 3 26 26 H 1.09000 * 109.46798 * 179.15755 * 1 2 3 27 27 H 1.09005 * 110.37264 * 265.19109 * 3 2 1 28 28 H 1.08997 * 110.37411 * 27.42176 * 3 2 1 29 29 H 1.08997 * 110.99373 * 204.83677 * 4 3 2 30 30 H 1.08998 * 110.99153 * 81.01621 * 4 3 2 31 31 H 1.09000 * 109.47422 * 297.50883 * 7 5 4 32 32 H 1.09005 * 109.46792 * 57.51190 * 7 5 4 33 33 H 0.97003 * 120.00382 * 359.97438 * 8 7 5 34 34 H 1.07998 * 119.92313 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.07877 * 180.28235 * 11 10 9 36 36 H 0.96999 * 120.00593 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.08480 * 180.02562 * 21 12 11 38 38 H 1.08001 * 119.91834 * 179.97438 * 22 21 12 39 39 H 1.09003 * 109.89400 * 117.33976 * 23 2 1 40 40 H 1.08996 * 110.02713 * 356.22493 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9159 0.2821 1.9315 6 1 2.3744 0.7747 2.7391 7 6 4.1549 -0.4347 2.4717 8 7 3.7610 -1.3458 3.5491 9 6 4.7216 -2.1105 4.1977 10 6 6.0606 -2.0126 3.8167 11 6 7.0099 -2.7567 4.4525 12 6 6.6346 -3.6343 5.4887 13 6 7.6109 -4.4119 6.1477 14 1 8.5306 -4.6661 5.6418 15 6 7.3874 -4.8531 7.4560 16 7 6.4569 -4.2922 8.1860 17 14 8.4169 -6.2431 8.1615 18 1 9.8491 -5.8509 8.1550 19 1 7.9855 -6.5204 9.5552 20 1 8.2340 -7.4633 7.3352 21 6 5.2803 -3.7319 5.8644 22 6 4.3427 -2.9771 5.2240 23 6 1.9974 -0.7057 1.1818 24 1 -0.3633 0.5007 0.8974 25 1 -0.3633 0.5268 -0.8823 26 1 -0.3633 -1.0276 -0.0151 27 1 2.2148 1.7038 -1.0183 28 1 1.2881 2.0595 0.4706 29 1 3.5496 2.2720 1.2639 30 1 4.1302 0.9281 0.2243 31 1 4.6249 -1.0029 1.6690 32 1 4.8607 0.3008 2.8578 33 1 2.8292 -1.4145 3.8099 34 1 6.3462 -1.3426 3.0193 35 1 8.0463 -2.6766 4.1597 36 1 6.3021 -4.5979 9.0934 37 1 4.9857 -4.4023 6.6581 38 1 3.3040 -3.0511 5.5106 39 1 2.5698 -1.5785 0.8675 40 1 1.1772 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691545814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:28 Heat of formation + Delta-G solvation = 22.291514 kcal Electronic energy + Delta-G solvation = -18720.512422 eV Core-core repulsion = 15920.261567 eV Total energy + Delta-G solvation = -2800.250855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.36279 -37.80926 -35.22862 -33.31120 -31.95487 -29.82135 -29.29659 -28.15424 -26.47736 -24.67869 -23.54849 -21.32322 -21.05502 -20.20259 -19.84195 -17.15010 -16.43263 -16.18198 -15.43944 -15.04580 -14.60770 -14.44595 -13.86690 -13.75889 -13.46388 -12.90917 -12.78203 -12.47631 -12.37685 -11.94099 -11.76804 -11.73551 -11.48990 -11.42769 -11.12122 -10.95216 -10.93248 -10.75839 -10.65712 -10.40545 -9.65070 -9.27328 -9.19913 -8.53474 -8.49101 -7.46228 -6.61026 -6.35654 -4.01480 2.95133 3.12780 3.15831 3.19269 3.38450 3.84203 4.07474 4.17805 4.51277 4.63352 4.79416 4.80208 5.11594 5.16503 5.20579 5.34447 5.39825 5.49658 5.63114 5.66231 5.76380 5.83961 5.90000 6.00139 6.09577 6.27323 6.30657 6.33578 6.75543 6.86080 6.88319 7.09172 7.22972 7.34065 7.61733 7.69272 7.82617 8.17466 8.36843 8.51624 8.70210 8.82541 9.08698 9.17886 10.40718 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.055617 B = 0.003349 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.321869 B = 8358.075726 C = 8592.698276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.041 3.959 4 C -0.122 4.122 5 C -0.119 4.119 6 H 0.077 0.923 7 C 0.152 3.848 8 N -0.762 5.762 9 C 0.093 3.907 10 C -0.160 4.160 11 C -0.188 4.188 12 C 0.075 3.925 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.810 5.810 17 Si 0.903 3.097 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.121 4.121 22 C -0.164 4.164 23 C 0.047 3.953 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.383 0.617 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.276 0.724 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 8.518 -10.936 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.086 4.086 4 C -0.160 4.160 5 C -0.139 4.139 6 H 0.095 0.905 7 C 0.026 3.974 8 N -0.398 5.398 9 C -0.004 4.004 10 C -0.182 4.182 11 C -0.208 4.208 12 C 0.072 3.928 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.438 5.438 17 Si 0.729 3.271 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.141 4.141 22 C -0.186 4.186 23 C -0.080 4.080 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.215 0.785 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.033 8.329 -11.270 16.673 hybrid contribution -0.244 -0.161 1.324 1.356 sum -9.277 8.168 -9.946 15.865 Atomic orbital electron populations 1.22535 0.87915 1.02075 1.00351 1.63596 1.07760 1.14290 1.40401 1.23054 0.95638 0.89501 1.00452 1.22698 0.97790 0.99070 0.96456 1.22606 0.97232 0.96410 0.97629 0.90495 1.20941 0.94477 0.91878 0.90129 1.43861 1.07527 1.47947 1.40434 1.17348 0.88642 0.97564 0.96838 1.19863 0.91785 1.03945 1.02622 1.20574 0.96788 1.00855 1.02595 1.17484 0.92406 0.91301 0.91645 1.19336 1.03524 1.29298 0.97781 0.91009 1.25788 0.95183 0.96117 0.96959 1.69836 1.29317 1.35904 1.08712 0.86458 0.80659 0.82087 0.77931 1.19287 1.20615 1.19108 1.20916 0.92374 1.00338 1.00491 1.20039 0.97845 1.01469 0.99267 1.22930 0.97768 0.97491 0.89833 0.95608 0.91570 0.91358 0.90259 0.93722 0.90626 0.90145 0.93178 0.93470 0.78478 0.89483 0.89130 0.91311 0.86372 0.89620 0.89790 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.07 0.55 0.73 16 2 N -0.54 -5.82 5.44 -239.52 -1.30 -7.12 16 3 C 0.04 0.38 6.73 -2.30 -0.02 0.37 16 4 C -0.12 -1.18 6.53 -24.59 -0.16 -1.34 16 5 C -0.12 -1.36 2.97 -88.79 -0.26 -1.62 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.15 2.19 4.23 -4.05 -0.02 2.18 16 8 N -0.76 -13.22 5.57 -58.50 -0.33 -13.54 16 9 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 10 C -0.16 -3.66 9.23 -39.77 -0.37 -4.02 16 11 C -0.19 -4.73 9.74 -39.26 -0.38 -5.12 16 12 C 0.07 2.04 5.57 -106.80 -0.59 1.45 16 13 C -0.47 -12.88 9.03 -37.87 -0.34 -13.22 16 14 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 15 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 16 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 17 Si 0.90 19.45 29.59 -169.99 -5.03 14.42 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.12 -3.21 8.63 -39.27 -0.34 -3.55 16 22 C -0.16 -3.88 9.82 -39.77 -0.39 -4.27 16 23 C 0.05 0.55 6.29 -2.83 -0.02 0.53 16 24 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.39 7.78 -51.93 -0.40 -0.02 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.05 0.76 7.78 -51.93 -0.40 0.36 16 32 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.38 6.03 8.40 -40.82 -0.34 5.69 16 34 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.12 3.24 6.19 -52.49 -0.32 2.92 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.08 1.10 7.73 -51.93 -0.40 0.70 16 40 H 0.05 0.60 7.59 -51.93 -0.39 0.21 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -28.53 321.85 -10.57 -39.10 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.38 Total: 8.00 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.99 Total: -24.56 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -1.02 Total: -41.81 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.53 -10.57 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691545814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.389 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds