Wall clock time and date at job start Mon Mar 30 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47845 * 111.00079 * 2 1 4 4 C 1.54904 * 104.79872 * 146.36451 * 3 2 1 5 5 C 1.55145 * 101.65401 * 322.93177 * 4 3 2 6 6 H 1.09001 * 110.70042 * 277.27596 * 5 4 3 7 7 C 1.52995 * 110.85863 * 154.10475 * 5 4 3 8 8 N 1.46494 * 109.47145 * 177.50598 * 7 5 4 9 9 C 1.38861 * 120.00191 * 180.02562 * 8 7 5 10 10 C 1.39562 * 119.83937 * 359.72343 * 9 8 7 11 11 C 1.36343 * 120.15796 * 179.75912 * 10 9 8 12 12 C 1.40882 * 119.83620 * 0.53814 * 11 10 9 13 13 C 1.41139 * 120.15271 * 179.73673 * 12 11 10 14 14 H 1.08000 * 120.00557 * 334.50983 * 13 12 11 15 15 C 1.39869 * 119.99571 * 154.50542 * 13 12 11 16 16 N 1.30897 * 120.00530 * 343.06780 * 15 13 12 17 17 Si 1.86804 * 119.99583 * 163.06487 * 15 13 12 18 18 H 1.48499 * 109.47282 * 60.00198 * 17 15 13 19 19 H 1.48507 * 109.46995 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47428 * 299.99796 * 17 15 13 21 21 C 1.40880 * 119.69259 * 359.71858 * 12 11 10 22 22 C 1.36343 * 119.83253 * 359.97438 * 21 12 11 23 23 C 1.47441 * 111.00054 * 120.84274 * 2 1 3 24 24 H 1.08997 * 109.46957 * 299.15620 * 1 2 3 25 25 H 1.08997 * 109.47253 * 59.15871 * 1 2 3 26 26 H 1.09000 * 109.46798 * 179.15755 * 1 2 3 27 27 H 1.09005 * 110.37264 * 265.19109 * 3 2 1 28 28 H 1.08997 * 110.37411 * 27.42176 * 3 2 1 29 29 H 1.08997 * 110.99373 * 204.83677 * 4 3 2 30 30 H 1.08998 * 110.99153 * 81.01621 * 4 3 2 31 31 H 1.09000 * 109.47422 * 297.50883 * 7 5 4 32 32 H 1.09005 * 109.46792 * 57.51190 * 7 5 4 33 33 H 0.97003 * 120.00382 * 359.97438 * 8 7 5 34 34 H 1.07998 * 119.92313 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.07877 * 180.28235 * 11 10 9 36 36 H 0.96999 * 120.00593 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.08480 * 180.02562 * 21 12 11 38 38 H 1.08001 * 119.91834 * 179.97438 * 22 21 12 39 39 H 1.09003 * 109.89400 * 117.33976 * 23 2 1 40 40 H 1.08996 * 110.02713 * 356.22493 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9159 0.2821 1.9315 6 1 2.3744 0.7747 2.7391 7 6 4.1549 -0.4347 2.4717 8 7 3.7610 -1.3458 3.5491 9 6 4.7216 -2.1105 4.1977 10 6 6.0606 -2.0126 3.8167 11 6 7.0099 -2.7567 4.4525 12 6 6.6346 -3.6343 5.4887 13 6 7.6109 -4.4119 6.1477 14 1 8.5306 -4.6661 5.6418 15 6 7.3874 -4.8531 7.4560 16 7 6.4569 -4.2922 8.1860 17 14 8.4169 -6.2431 8.1615 18 1 9.8491 -5.8509 8.1550 19 1 7.9855 -6.5204 9.5552 20 1 8.2340 -7.4633 7.3352 21 6 5.2803 -3.7319 5.8644 22 6 4.3427 -2.9771 5.2240 23 6 1.9974 -0.7057 1.1818 24 1 -0.3633 0.5007 0.8974 25 1 -0.3633 0.5268 -0.8823 26 1 -0.3633 -1.0276 -0.0151 27 1 2.2148 1.7038 -1.0183 28 1 1.2881 2.0595 0.4706 29 1 3.5496 2.2720 1.2639 30 1 4.1302 0.9281 0.2243 31 1 4.6249 -1.0029 1.6690 32 1 4.8607 0.3008 2.8578 33 1 2.8292 -1.4145 3.8099 34 1 6.3462 -1.3426 3.0193 35 1 8.0463 -2.6766 4.1597 36 1 6.3021 -4.5979 9.0934 37 1 4.9857 -4.4023 6.6581 38 1 3.3040 -3.0511 5.5106 39 1 2.5698 -1.5785 0.8675 40 1 1.1772 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691545814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:27 Heat of formation + Delta-G solvation = 5.165061 kcal Electronic energy + Delta-G solvation = -18721.255081 eV Core-core repulsion = 15920.261567 eV Total energy + Delta-G solvation = -2800.993514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.34303 -39.50614 -36.77349 -34.97511 -33.18998 -31.46619 -30.78490 -29.61249 -27.54471 -26.15445 -24.93852 -22.81979 -22.19165 -21.78220 -21.05025 -19.10000 -17.69506 -17.37496 -17.05392 -16.35153 -15.94675 -15.60021 -15.37731 -14.76977 -14.56993 -14.44728 -14.26529 -13.90536 -13.69568 -13.55513 -13.31878 -13.01048 -12.75005 -12.59025 -12.53160 -12.34327 -12.25378 -11.95074 -11.79503 -11.63751 -11.51831 -11.18239 -11.04866 -10.28967 -9.39684 -9.29798 -8.53758 -8.15203 -6.00910 1.11199 1.19891 1.40464 1.51427 1.60454 2.28049 2.84498 2.87778 3.07178 3.64382 3.69637 3.85351 3.89655 4.35864 4.38685 4.42915 4.44889 4.47502 4.51448 4.53945 4.67708 4.82440 4.86504 4.95515 4.97577 5.01540 5.10790 5.12497 5.19111 5.32100 5.33885 5.42824 5.74628 5.76668 5.93047 5.97416 6.10939 6.19029 6.41892 6.68011 6.88213 7.09156 7.13754 7.30511 8.49511 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.055617 B = 0.003349 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.321869 B = 8358.075726 C = 8592.698276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.552 5.552 3 C 0.042 3.958 4 C -0.118 4.118 5 C -0.110 4.110 6 H 0.083 0.917 7 C 0.151 3.849 8 N -0.752 5.752 9 C 0.113 3.887 10 C -0.167 4.167 11 C -0.197 4.197 12 C 0.035 3.965 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.031 3.969 16 N -0.843 5.843 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.263 1.263 21 C -0.140 4.140 22 C -0.176 4.176 23 C 0.050 3.950 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.394 0.606 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.282 0.718 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 9.660 -11.909 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.276 5.276 3 C -0.085 4.085 4 C -0.156 4.156 5 C -0.130 4.130 6 H 0.101 0.899 7 C 0.026 3.974 8 N -0.386 5.386 9 C 0.014 3.986 10 C -0.190 4.190 11 C -0.217 4.217 12 C 0.032 3.968 13 C -0.539 4.539 14 H 0.086 0.914 15 C -0.180 4.180 16 N -0.472 5.472 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.160 4.160 22 C -0.198 4.198 23 C -0.078 4.078 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.227 0.773 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.910 9.506 -12.276 18.420 hybrid contribution -0.099 -0.379 1.472 1.524 sum -10.009 9.128 -10.804 17.327 Atomic orbital electron populations 1.22572 0.86836 1.02338 1.01152 1.63579 1.08917 1.15230 1.39908 1.23102 0.95455 0.88884 1.01058 1.22708 0.97982 0.99160 0.95775 1.22504 0.95747 0.96522 0.98187 0.89890 1.21078 0.96113 0.91305 0.88934 1.43934 1.07271 1.47169 1.40261 1.17450 0.89328 0.96315 0.95538 1.20114 0.91793 1.03973 1.03090 1.20775 0.97728 1.00861 1.02377 1.17808 0.93007 0.92788 0.93154 1.19573 1.03955 1.31366 0.98999 0.91449 1.26611 0.96488 0.98144 0.96787 1.69902 1.30874 1.37179 1.09209 0.85338 0.78943 0.78443 0.77409 1.18653 1.19445 1.18785 1.20860 0.92890 1.01305 1.00961 1.20240 0.98449 1.01461 0.99613 1.22823 0.97682 0.97037 0.90235 0.95166 0.90347 0.91470 0.89352 0.92704 0.89097 0.90462 0.93595 0.93476 0.77255 0.86813 0.88669 0.90765 0.88225 0.87505 0.91744 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.12 127.69 1.16 1.47 16 2 N -0.55 -10.69 5.44 -911.71 -4.96 -15.65 16 3 C 0.04 0.66 6.73 86.77 0.58 1.25 16 4 C -0.12 -1.94 6.53 31.98 0.21 -1.73 16 5 C -0.11 -2.22 2.97 -9.61 -0.03 -2.25 16 6 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 7 C 0.15 4.00 4.23 86.38 0.37 4.37 16 8 N -0.75 -24.47 5.57 -339.01 -1.89 -26.36 16 9 C 0.11 4.85 6.67 38.67 0.26 5.10 16 10 C -0.17 -7.50 9.23 22.15 0.20 -7.30 16 11 C -0.20 -10.08 9.74 22.48 0.22 -9.86 16 12 C 0.04 1.99 5.57 -21.27 -0.12 1.88 16 13 C -0.51 -28.95 9.03 23.38 0.21 -28.73 16 14 H 0.07 3.72 7.90 -2.91 -0.02 3.70 16 15 C 0.03 1.67 5.15 85.23 0.44 2.11 16 16 N -0.84 -46.55 10.96 21.82 0.24 -46.31 16 17 Si 0.98 40.56 29.59 68.60 2.03 42.59 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.14 -7.65 8.63 22.47 0.19 -7.45 16 22 C -0.18 -8.27 9.82 22.15 0.22 -8.05 16 23 C 0.05 1.06 6.29 86.65 0.54 1.61 16 24 H 0.03 0.44 8.10 -2.39 -0.02 0.42 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.05 0.76 7.78 -2.39 -0.02 0.75 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 31 H 0.05 1.30 7.78 -2.39 -0.02 1.28 16 32 H 0.05 1.30 7.94 -2.38 -0.02 1.28 16 33 H 0.39 11.44 8.40 -92.71 -0.78 10.66 16 34 H 0.11 4.42 6.68 -2.91 -0.02 4.40 16 35 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 37 H 0.10 5.71 6.19 -2.91 -0.02 5.69 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.06 1.61 7.73 -2.39 -0.02 1.59 16 40 H 0.06 1.14 7.59 -2.39 -0.02 1.12 16 Total: -1.00 -62.38 321.85 0.12 -62.27 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.24 Total: 31.08 kcal Atomic # 6 Polarization: -52.06 SS G_CDS: 4.46 Total: -47.60 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -6.61 Total: -88.33 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -62.38 0.12 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691545814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.432 kcal (2) G-P(sol) polarization free energy of solvation -62.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds