Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48531 * 111.00241 * 2 1 4 4 C 1.54931 * 103.22709 * 200.27925 * 3 2 1 5 5 C 1.54597 * 102.92387 * 37.41633 * 4 3 2 6 6 H 1.08998 * 110.39549 * 96.99974 * 5 4 3 7 7 C 1.53000 * 110.31056 * 219.12803 * 5 4 3 8 8 N 1.46496 * 109.47215 * 182.16825 * 7 5 4 9 9 C 1.38853 * 119.99983 * 179.97438 * 8 7 5 10 10 C 1.39568 * 119.84081 * 179.97438 * 9 8 7 11 11 C 1.36339 * 120.16044 * 180.02562 * 10 9 8 12 12 C 1.40884 * 119.84018 * 0.02562 * 11 10 9 13 13 C 1.41128 * 120.15914 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99929 * 204.33523 * 13 12 11 15 15 C 1.39864 * 120.00465 * 24.61255 * 13 12 11 16 16 N 1.30908 * 119.99557 * 17.97311 * 15 13 12 17 17 Si 1.86791 * 120.00713 * 197.97929 * 15 13 12 18 18 H 1.48500 * 109.47125 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47594 * 119.99774 * 17 15 13 20 20 H 1.48500 * 109.47252 * 239.99995 * 17 15 13 21 21 C 1.40889 * 119.68610 * 0.28112 * 12 11 10 22 22 C 1.36341 * 119.83466 * 359.43218 * 21 12 11 23 23 C 1.47903 * 110.99651 * 242.60186 * 2 1 3 24 24 H 1.08998 * 109.47608 * 177.39587 * 1 2 3 25 25 H 1.09002 * 109.46960 * 297.39456 * 1 2 3 26 26 H 1.09002 * 109.47186 * 57.38952 * 1 2 3 27 27 H 1.08996 * 110.67099 * 318.71464 * 3 2 1 28 28 H 1.09008 * 110.66515 * 81.68014 * 3 2 1 29 29 H 1.09001 * 110.72871 * 279.05786 * 4 3 2 30 30 H 1.09002 * 110.72717 * 155.77372 * 4 3 2 31 31 H 1.08994 * 109.47175 * 62.16489 * 7 5 4 32 32 H 1.09002 * 109.47119 * 302.16641 * 7 5 4 33 33 H 0.97005 * 119.99937 * 359.97438 * 8 7 5 34 34 H 1.07999 * 119.91809 * 0.02562 * 10 9 8 35 35 H 1.08007 * 120.08034 * 180.02562 * 11 10 9 36 36 H 0.96993 * 120.00138 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.08574 * 179.70014 * 21 12 11 38 38 H 1.08002 * 119.92267 * 180.27929 * 22 21 12 39 39 H 1.09000 * 109.91915 * 26.49930 * 23 2 1 40 40 H 1.08995 * 110.08162 * 265.28890 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2105 -0.5227 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 6 4.4895 -0.8533 -1.5383 8 7 4.3540 -1.8615 -2.5925 9 6 5.3224 -2.8454 -2.7408 10 6 5.1897 -3.8046 -3.7458 11 6 6.1364 -4.7740 -3.8970 12 6 7.2505 -4.8062 -3.0352 13 6 8.2348 -5.8063 -3.1859 14 1 8.8512 -6.0884 -2.3451 15 6 8.4161 -6.4280 -4.4256 16 7 7.9476 -5.8691 -5.5128 17 14 9.3264 -8.0557 -4.5301 18 1 9.7526 -8.4727 -3.1700 19 1 8.4288 -9.0889 -5.1064 20 1 10.5220 -7.8995 -5.3968 21 6 7.3746 -3.8386 -2.0187 22 6 6.4231 -2.8715 -1.8830 23 6 1.9989 -0.6354 -1.2259 24 1 -0.3634 -1.0266 -0.0467 25 1 -0.3633 0.4729 0.9124 26 1 -0.3634 0.5538 -0.8657 27 1 1.4238 2.0205 -0.6729 28 1 2.0014 1.7987 1.0092 29 1 4.1116 0.8834 0.2787 30 1 3.8124 2.1351 -0.9716 31 1 4.5155 -1.3453 -0.5661 32 1 5.4131 -0.2939 -1.6872 33 1 3.5876 -1.8417 -3.1869 34 1 4.3349 -3.7789 -4.4055 35 1 6.0326 -5.5154 -4.6755 36 1 8.0737 -6.3000 -6.3725 37 1 8.2234 -3.8601 -1.3514 38 1 6.5191 -2.1263 -1.1072 39 1 1.2758 -0.5402 -2.0359 40 1 2.2115 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691545815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = 23.197072 kcal Electronic energy + Delta-G solvation = -18746.059815 eV Core-core repulsion = 15945.848228 eV Total energy + Delta-G solvation = -2800.211587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.33862 -37.78037 -35.21392 -33.32609 -31.98711 -29.78755 -29.26622 -28.11139 -26.46550 -24.65301 -23.54157 -21.37336 -21.05444 -20.15671 -19.73680 -17.14176 -16.38122 -16.20514 -15.41901 -15.12999 -14.62322 -14.39421 -13.98082 -13.79771 -13.20472 -12.93280 -12.76969 -12.44813 -12.27327 -11.92601 -11.74930 -11.63613 -11.56050 -11.43626 -11.15127 -10.98484 -10.89812 -10.69359 -10.58131 -10.38820 -9.62770 -9.26154 -9.19185 -8.61377 -8.48830 -7.44574 -6.61426 -6.34738 -3.99567 2.93118 3.14235 3.17633 3.23149 3.38826 3.86613 4.08177 4.22972 4.52019 4.63645 4.80301 4.83025 5.10050 5.18196 5.19999 5.34987 5.43504 5.52410 5.63349 5.67588 5.75586 5.85882 5.94348 6.00733 6.13767 6.26109 6.32416 6.35775 6.70975 6.83529 6.90235 7.10936 7.24708 7.35006 7.63669 7.70746 7.84341 8.19050 8.38237 8.53674 8.72329 8.84383 9.09753 9.19380 10.40378 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.052613 B = 0.003384 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.061817 B = 8272.634958 C = 8423.835757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.116 4.116 5 C -0.109 4.109 6 H 0.077 0.923 7 C 0.150 3.850 8 N -0.762 5.762 9 C 0.093 3.907 10 C -0.164 4.164 11 C -0.123 4.123 12 C 0.074 3.926 13 C -0.467 4.467 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.278 1.278 21 C -0.189 4.189 22 C -0.159 4.159 23 C 0.039 3.961 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.383 0.617 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.275 0.725 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 11.229 6.150 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.154 4.154 5 C -0.128 4.128 6 H 0.095 0.905 7 C 0.024 3.976 8 N -0.398 5.398 9 C -0.004 4.004 10 C -0.186 4.186 11 C -0.143 4.143 12 C 0.071 3.929 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.209 4.209 22 C -0.181 4.181 23 C -0.089 4.089 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.215 0.785 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.879 10.981 6.522 16.777 hybrid contribution -0.195 -0.242 -1.198 1.238 sum -11.074 10.739 5.324 16.319 Atomic orbital electron populations 1.22508 0.88099 1.02069 1.00597 1.64744 1.07874 1.14752 1.37267 1.23250 0.95227 0.90006 1.00945 1.22486 0.96515 0.98080 0.98368 1.22236 0.95190 0.96024 0.99346 0.90484 1.21025 0.95624 0.89017 0.91896 1.43878 1.26344 1.31974 1.37615 1.17344 0.91738 0.92603 0.98752 1.20035 1.00646 0.98397 0.99508 1.20912 0.93210 0.98733 1.01448 1.17493 0.92232 0.91729 0.91426 1.19398 1.16808 1.17681 0.95891 0.90931 1.25795 0.94931 0.98046 0.95304 1.69869 1.38609 1.36250 0.98848 0.86371 0.79356 0.82381 0.79175 1.18631 1.19989 1.20320 1.20558 0.99440 0.97494 1.03406 1.19865 0.96238 1.01223 1.00788 1.23001 0.95088 1.00372 0.90414 0.91278 0.91412 0.95601 0.93964 0.90072 0.90167 0.90867 0.93050 0.93555 0.78487 0.89634 0.86386 0.91429 0.89150 0.89474 0.94039 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.06 0.56 0.71 16 2 N -0.52 -5.80 5.55 -238.72 -1.33 -7.13 16 3 C 0.03 0.32 6.56 -1.90 -0.01 0.30 16 4 C -0.12 -1.14 6.61 -24.87 -0.16 -1.30 16 5 C -0.11 -1.25 3.06 -89.26 -0.27 -1.52 16 6 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.15 2.21 3.97 -4.04 -0.02 2.19 16 8 N -0.76 -13.33 5.42 -58.50 -0.32 -13.64 16 9 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 10 C -0.16 -3.89 9.82 -39.77 -0.39 -4.28 16 11 C -0.12 -3.27 8.64 -39.27 -0.34 -3.61 16 12 C 0.07 2.04 5.57 -106.80 -0.60 1.44 16 13 C -0.47 -12.87 9.03 -37.88 -0.34 -13.21 16 14 H 0.07 1.94 7.91 -52.48 -0.42 1.53 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.71 10.96 55.54 0.61 -21.10 16 17 Si 0.90 19.46 29.60 -169.99 -5.03 14.43 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 C -0.19 -4.78 9.74 -39.26 -0.38 -5.16 16 22 C -0.16 -3.66 9.23 -39.77 -0.37 -4.03 16 23 C 0.04 0.45 6.05 -2.75 -0.02 0.44 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.03 0.22 8.00 -51.93 -0.42 -0.20 16 27 H 0.04 0.37 7.96 -51.93 -0.41 -0.05 16 28 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 33 H 0.38 6.06 8.31 -40.82 -0.34 5.72 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.12 3.25 6.16 -52.48 -0.32 2.92 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 39 H 0.04 0.45 7.73 -51.93 -0.40 0.05 16 40 H 0.09 1.20 7.57 -51.93 -0.39 0.81 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -28.73 321.50 -10.58 -39.31 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.38 Total: 7.99 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.98 Total: -24.70 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -1.03 Total: -41.88 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.73 -10.58 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691545815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.508 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds