Wall clock time and date at job start Mon Mar 30 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45978 * 2 1 4 4 C 1.53037 * 109.46492 * 240.02159 * 2 1 3 5 5 C 1.53113 * 109.28000 * 180.80137 * 4 2 1 6 6 H 1.09000 * 109.52423 * 297.68709 * 5 4 2 7 7 N 1.46497 * 109.52405 * 177.55745 * 5 4 2 8 8 C 1.39685 * 120.00077 * 155.12578 * 7 5 4 9 9 C 1.39343 * 119.94888 * 0.02562 * 8 7 5 10 10 C 1.38478 * 120.42176 * 180.02562 * 9 8 7 11 11 C 1.37695 * 120.32789 * 0.02562 * 10 9 8 12 12 C 1.40749 * 119.89119 * 359.97438 * 11 10 9 13 13 C 1.41402 * 120.20903 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00341 * 205.09925 * 13 12 11 15 15 C 1.39932 * 119.99962 * 25.09735 * 13 12 11 16 16 N 1.30830 * 120.00103 * 17.31434 * 15 13 12 17 17 Si 1.86804 * 120.00117 * 197.31169 * 15 13 12 18 18 H 1.48500 * 109.47349 * 265.18556 * 17 15 13 19 19 H 1.48507 * 109.46629 * 25.18628 * 17 15 13 20 20 H 1.48496 * 109.46892 * 145.18082 * 17 15 13 21 21 C 1.38284 * 119.95463 * 180.30350 * 8 7 5 22 22 C 1.53120 * 109.21251 * 57.61885 * 5 4 2 23 23 C 1.53041 * 109.27945 * 302.44094 * 22 5 4 24 24 N 1.46843 * 109.46556 * 119.96493 * 2 1 3 25 25 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47398 * 299.97510 * 1 2 3 27 27 H 1.09000 * 109.47331 * 59.98786 * 1 2 3 28 28 H 1.09000 * 109.50217 * 60.85598 * 4 2 1 29 29 H 1.08999 * 109.53076 * 300.76441 * 4 2 1 30 30 H 0.96993 * 120.00034 * 335.13036 * 7 5 4 31 31 H 1.07993 * 119.78814 * 0.04577 * 9 8 7 32 32 H 1.08000 * 119.83683 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.05785 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00215 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.15917 * 359.97438 * 21 8 7 36 36 H 1.09006 * 109.50072 * 62.32034 * 22 5 4 37 37 H 1.08999 * 109.50572 * 182.43752 * 22 5 4 38 38 H 1.08996 * 109.41006 * 299.07061 * 23 22 5 39 39 H 1.08993 * 109.46695 * 179.13009 * 23 22 5 40 40 H 1.00905 * 110.99747 * 305.85544 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7360 -1.2355 6 1 3.9456 0.2870 -1.2684 7 7 4.0642 -1.4757 -2.3999 8 6 5.3394 -1.2126 -2.9056 9 6 6.1417 -0.2467 -2.3014 10 6 7.4073 0.0224 -2.7949 11 6 7.8868 -0.6618 -3.8893 12 6 7.0878 -1.6403 -4.5101 13 6 7.5737 -2.3474 -5.6341 14 1 6.8811 -2.7755 -6.3437 15 6 8.9521 -2.4925 -5.8271 16 7 9.7771 -2.2869 -4.8328 17 14 9.6141 -2.9799 -7.5045 18 1 9.8071 -4.4515 -7.5521 19 1 8.6469 -2.5732 -8.5556 20 1 10.9143 -2.3022 -7.7394 21 6 5.8017 -1.9069 -4.0085 22 6 4.0561 -1.4176 0.0469 23 6 3.4865 -0.6773 1.2592 24 7 2.0193 -0.6915 1.1994 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5140 -0.8899 28 1 1.6894 -0.1984 -2.1399 29 1 1.6659 -1.7448 -1.2581 30 1 3.5053 -2.1481 -2.8197 31 1 5.7743 0.2953 -1.4425 32 1 8.0209 0.7733 -2.3195 33 1 8.8746 -0.4487 -4.2704 34 1 10.7325 -2.3872 -4.9667 35 1 5.1791 -2.6529 -4.4801 36 1 3.7148 -2.4528 0.0603 37 1 5.1453 -1.3925 0.0827 38 1 3.8403 0.3536 1.2531 39 1 3.8175 -1.1694 2.1737 40 1 1.6196 -0.2922 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692127813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:24 Heat of formation + Delta-G solvation = 8.524630 kcal Electronic energy + Delta-G solvation = -19137.149735 eV Core-core repulsion = 16336.301903 eV Total energy + Delta-G solvation = -2800.847832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.18637 -37.45796 -34.94195 -33.16411 -32.28492 -30.55443 -29.67132 -27.32485 -26.57358 -25.16990 -23.04162 -21.68275 -20.83356 -19.99449 -19.46522 -17.25291 -16.45913 -15.50562 -15.37386 -15.09076 -14.76001 -14.22795 -13.88596 -13.78998 -13.49757 -12.74138 -12.65109 -12.32828 -12.14847 -12.03086 -11.90166 -11.57403 -11.41197 -11.16673 -11.03093 -10.99497 -10.71465 -10.47850 -10.37463 -10.20213 -9.70167 -9.28698 -9.16626 -8.67631 -8.53749 -7.34525 -6.67614 -6.15910 -4.27605 2.88271 3.11698 3.16802 3.25650 3.40470 3.99349 4.05486 4.19106 4.74370 4.79424 4.91006 5.03806 5.24451 5.28202 5.48304 5.49097 5.59485 5.68410 5.78080 5.81662 5.87018 5.98248 6.05041 6.19413 6.33348 6.37052 6.49619 6.62605 6.98042 7.07565 7.11770 7.15318 7.28586 7.38298 7.44752 7.83562 7.95535 8.18040 8.29115 8.55669 8.69566 8.83048 9.03737 9.16154 10.28648 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003908 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.533657 B = 7162.361345 C = 7464.017163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.038 0.962 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.069 0.931 7 N -0.757 5.757 8 C 0.226 3.774 9 C -0.302 4.302 10 C -0.075 4.075 11 C -0.200 4.200 12 C 0.142 3.858 13 C -0.465 4.465 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.793 5.793 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.261 1.261 20 H -0.276 1.276 21 C -0.290 4.290 22 C -0.132 4.132 23 C 0.061 3.939 24 N -0.686 5.686 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.387 0.613 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.278 0.722 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 3.650 8.461 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.056 0.944 4 C -0.156 4.156 5 C 0.055 3.945 6 H 0.087 0.913 7 N -0.389 5.389 8 C 0.128 3.872 9 C -0.325 4.325 10 C -0.095 4.095 11 C -0.220 4.220 12 C 0.139 3.861 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.140 4.140 16 N -0.418 5.418 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.185 1.185 20 H -0.201 1.201 21 C -0.314 4.314 22 C -0.172 4.172 23 C -0.069 4.069 24 N -0.318 5.318 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.220 0.780 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.619 3.148 8.355 14.653 hybrid contribution 0.436 0.377 -0.515 0.773 sum -11.183 3.525 7.840 14.105 Atomic orbital electron populations 1.21815 0.94361 1.02551 1.01520 1.21409 0.94991 0.95191 0.90743 0.94450 1.21893 0.95471 1.01585 0.96695 1.20642 0.92198 0.95866 0.85774 0.91271 1.44486 1.16060 1.44966 1.33363 1.17474 0.83615 0.93681 0.92430 1.19868 0.97541 1.08197 1.06922 1.20437 0.94346 0.98125 0.96543 1.21157 1.01441 0.99856 0.99537 1.17331 0.89713 0.88689 0.90358 1.19546 0.91476 1.30902 1.07589 0.90693 1.25884 0.97152 0.93218 0.97727 1.69862 1.04427 1.36384 1.31176 0.86368 0.78764 0.79084 0.82865 1.19691 1.18503 1.20121 1.20409 1.00456 1.08393 1.02136 1.22122 1.01021 1.00259 0.93796 1.21899 0.87090 0.98708 0.99178 1.60353 1.07620 1.59366 1.04507 0.91753 0.92895 0.92088 0.91305 0.90996 0.78018 0.89723 0.89776 0.86863 0.91103 0.89368 0.91382 0.90820 0.95304 0.90871 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.43 37.16 0.35 -0.90 16 2 C 0.09 0.92 3.04 -67.73 -0.21 0.72 16 3 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.12 -1.47 4.85 -26.65 -0.13 -1.60 16 5 C 0.16 2.48 2.21 -67.81 -0.15 2.33 16 6 H 0.07 1.15 6.48 -51.93 -0.34 0.82 16 7 N -0.76 -13.83 5.25 -52.10 -0.27 -14.11 16 8 C 0.23 5.17 6.63 -83.85 -0.56 4.61 16 9 C -0.30 -6.97 8.89 -39.08 -0.35 -7.31 16 10 C -0.08 -1.84 10.02 -39.69 -0.40 -2.24 16 11 C -0.20 -5.38 8.69 -38.83 -0.34 -5.72 16 12 C 0.14 3.92 5.57 -106.85 -0.59 3.33 16 13 C -0.47 -12.74 9.05 -37.74 -0.34 -13.08 16 14 H 0.07 1.98 7.90 -52.48 -0.41 1.56 16 15 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 16 N -0.79 -21.10 10.96 55.55 0.61 -20.49 16 17 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.29 -7.35 9.63 -38.67 -0.37 -7.72 16 22 C -0.13 -1.93 5.62 -26.65 -0.15 -2.08 16 23 C 0.06 0.72 6.55 -3.83 -0.03 0.69 16 24 N -0.69 -7.32 6.50 -106.76 -0.69 -8.01 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.39 6.56 8.61 -40.82 -0.35 6.21 16 31 H 0.08 1.77 6.05 -52.49 -0.32 1.45 16 32 H 0.08 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.11 3.15 6.18 -52.49 -0.32 2.83 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.34 2.93 8.79 -39.29 -0.35 2.58 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -28.44 318.33 -10.21 -38.65 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.27 Total: 12.17 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.35 Total: -27.07 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.36 Total: -42.61 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.44 -10.21 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds