Wall clock time and date at job start Mon Mar 30 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.45978 * 2 1 4 4 C 1.53037 * 109.46492 * 240.02159 * 2 1 3 5 5 C 1.53113 * 109.28000 * 180.80137 * 4 2 1 6 6 H 1.09000 * 109.52423 * 297.68709 * 5 4 2 7 7 N 1.46497 * 109.52405 * 177.55745 * 5 4 2 8 8 C 1.39685 * 120.00077 * 155.12578 * 7 5 4 9 9 C 1.39343 * 119.94888 * 0.02562 * 8 7 5 10 10 C 1.38478 * 120.42176 * 180.02562 * 9 8 7 11 11 C 1.37695 * 120.32789 * 0.02562 * 10 9 8 12 12 C 1.40749 * 119.89119 * 359.97438 * 11 10 9 13 13 C 1.41402 * 120.20903 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00341 * 205.09925 * 13 12 11 15 15 C 1.39932 * 119.99962 * 25.09735 * 13 12 11 16 16 N 1.30830 * 120.00103 * 17.31434 * 15 13 12 17 17 Si 1.86804 * 120.00117 * 197.31169 * 15 13 12 18 18 H 1.48500 * 109.47349 * 265.18556 * 17 15 13 19 19 H 1.48507 * 109.46629 * 25.18628 * 17 15 13 20 20 H 1.48496 * 109.46892 * 145.18082 * 17 15 13 21 21 C 1.38284 * 119.95463 * 180.30350 * 8 7 5 22 22 C 1.53120 * 109.21251 * 57.61885 * 5 4 2 23 23 C 1.53041 * 109.27945 * 302.44094 * 22 5 4 24 24 N 1.46843 * 109.46556 * 119.96493 * 2 1 3 25 25 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47398 * 299.97510 * 1 2 3 27 27 H 1.09000 * 109.47331 * 59.98786 * 1 2 3 28 28 H 1.09000 * 109.50217 * 60.85598 * 4 2 1 29 29 H 1.08999 * 109.53076 * 300.76441 * 4 2 1 30 30 H 0.96993 * 120.00034 * 335.13036 * 7 5 4 31 31 H 1.07993 * 119.78814 * 0.04577 * 9 8 7 32 32 H 1.08000 * 119.83683 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.05785 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00215 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.15917 * 359.97438 * 21 8 7 36 36 H 1.09006 * 109.50072 * 62.32034 * 22 5 4 37 37 H 1.08999 * 109.50572 * 182.43752 * 22 5 4 38 38 H 1.08996 * 109.41006 * 299.07061 * 23 22 5 39 39 H 1.08993 * 109.46695 * 179.13009 * 23 22 5 40 40 H 1.00905 * 110.99747 * 305.85544 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7360 -1.2355 6 1 3.9456 0.2870 -1.2684 7 7 4.0642 -1.4757 -2.3999 8 6 5.3394 -1.2126 -2.9056 9 6 6.1417 -0.2467 -2.3014 10 6 7.4073 0.0224 -2.7949 11 6 7.8868 -0.6618 -3.8893 12 6 7.0878 -1.6403 -4.5101 13 6 7.5737 -2.3474 -5.6341 14 1 6.8811 -2.7755 -6.3437 15 6 8.9521 -2.4925 -5.8271 16 7 9.7771 -2.2869 -4.8328 17 14 9.6141 -2.9799 -7.5045 18 1 9.8071 -4.4515 -7.5521 19 1 8.6469 -2.5732 -8.5556 20 1 10.9143 -2.3022 -7.7394 21 6 5.8017 -1.9069 -4.0085 22 6 4.0561 -1.4176 0.0469 23 6 3.4865 -0.6773 1.2592 24 7 2.0193 -0.6915 1.1994 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8902 27 1 -0.3634 0.5140 -0.8899 28 1 1.6894 -0.1984 -2.1399 29 1 1.6659 -1.7448 -1.2581 30 1 3.5053 -2.1481 -2.8197 31 1 5.7743 0.2953 -1.4425 32 1 8.0209 0.7733 -2.3195 33 1 8.8746 -0.4487 -4.2704 34 1 10.7325 -2.3872 -4.9667 35 1 5.1791 -2.6529 -4.4801 36 1 3.7148 -2.4528 0.0603 37 1 5.1453 -1.3925 0.0827 38 1 3.8403 0.3536 1.2531 39 1 3.8175 -1.1694 2.1737 40 1 1.6196 -0.2922 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692127813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:23 Heat of formation + Delta-G solvation = -8.850933 kcal Electronic energy + Delta-G solvation = -19137.903195 eV Core-core repulsion = 16336.301903 eV Total energy + Delta-G solvation = -2801.601293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41935 -39.11688 -36.52309 -34.94410 -33.22506 -32.00578 -31.60537 -28.72339 -27.74890 -27.12152 -24.24534 -22.86021 -22.65598 -21.59510 -20.68054 -19.12563 -17.48027 -17.34867 -16.85451 -16.43543 -16.09163 -15.92152 -15.09118 -14.94590 -14.77449 -14.40718 -14.20717 -13.94205 -13.57570 -13.21949 -13.07897 -12.88904 -12.77271 -12.75224 -12.52730 -12.34632 -12.04764 -11.93959 -11.76850 -11.60384 -11.36623 -11.19295 -11.03577 -10.41748 -9.39302 -9.33950 -8.60843 -7.94044 -6.32913 1.04462 1.34042 1.38996 1.52409 1.59581 2.22860 2.73596 2.80510 3.22167 3.78761 3.82787 3.97636 4.02726 4.18960 4.39218 4.44819 4.47911 4.56356 4.56881 4.72943 4.81422 4.87634 4.94865 5.03286 5.11635 5.12904 5.16417 5.19826 5.22522 5.34283 5.41331 5.42116 5.60597 5.95097 6.02251 6.08574 6.19712 6.31068 6.54634 6.63088 6.89509 7.01999 7.04769 7.25128 8.37749 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003908 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.533657 B = 7162.361345 C = 7464.017163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.111 4.111 5 C 0.159 3.841 6 H 0.060 0.940 7 N -0.748 5.748 8 C 0.236 3.764 9 C -0.303 4.303 10 C -0.075 4.075 11 C -0.232 4.232 12 C 0.114 3.886 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.259 1.259 20 H -0.265 1.265 21 C -0.314 4.314 22 C -0.128 4.128 23 C 0.067 3.933 24 N -0.688 5.688 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.394 0.606 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.287 0.713 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 4.062 9.302 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.056 0.944 4 C -0.150 4.150 5 C 0.053 3.947 6 H 0.078 0.922 7 N -0.379 5.379 8 C 0.135 3.865 9 C -0.326 4.326 10 C -0.094 4.094 11 C -0.253 4.253 12 C 0.111 3.889 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.189 1.189 21 C -0.338 4.338 22 C -0.167 4.167 23 C -0.063 4.063 24 N -0.322 5.322 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.228 0.772 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.080 3.565 9.241 16.407 hybrid contribution 0.772 0.271 -0.645 1.042 sum -12.308 3.837 8.596 15.495 Atomic orbital electron populations 1.21766 0.92515 1.02709 1.02676 1.21417 0.96382 0.94709 0.89708 0.94406 1.21846 0.92910 1.02029 0.98167 1.20854 0.94280 0.94809 0.84763 0.92240 1.44591 1.14434 1.44973 1.33886 1.17530 0.85129 0.92515 0.91302 1.20135 0.97020 1.08088 1.07318 1.20725 0.95143 0.97926 0.95635 1.21087 1.01204 1.01534 1.01429 1.17694 0.90892 0.89245 0.91067 1.19811 0.92740 1.32490 1.08334 0.91001 1.26770 0.96764 0.92671 1.01699 1.69919 1.05075 1.36782 1.33269 0.85206 0.78169 0.79073 0.77284 1.18695 1.18318 1.18922 1.20533 1.00262 1.09493 1.03512 1.22022 0.99662 1.00239 0.94820 1.21798 0.87852 0.98502 0.98113 1.60303 1.06815 1.59745 1.05307 0.92065 0.91328 0.91436 0.90943 0.91014 0.77206 0.87301 0.87496 0.88622 0.90275 0.89224 0.92119 0.93120 0.94989 0.89544 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.43 71.98 0.68 -1.27 16 2 C 0.09 1.62 3.04 44.94 0.14 1.76 16 3 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.11 -2.53 4.85 30.64 0.15 -2.38 16 5 C 0.16 4.62 2.21 45.07 0.10 4.71 16 6 H 0.06 1.88 6.48 -2.39 -0.02 1.86 16 7 N -0.75 -26.80 5.25 -318.74 -1.67 -28.47 16 8 C 0.24 10.81 6.63 38.17 0.25 11.06 16 9 C -0.30 -13.81 8.89 22.59 0.20 -13.61 16 10 C -0.08 -3.71 10.02 22.20 0.22 -3.49 16 11 C -0.23 -12.96 8.69 22.76 0.20 -12.76 16 12 C 0.11 6.53 5.57 -21.31 -0.12 6.41 16 13 C -0.50 -28.67 9.05 23.46 0.21 -28.45 16 14 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 15 C 0.04 1.88 5.14 85.25 0.44 2.32 16 16 N -0.82 -45.05 10.96 21.82 0.24 -44.81 16 17 Si 0.98 39.64 29.59 68.60 2.03 41.67 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.31 -16.34 9.63 22.86 0.22 -16.12 16 22 C -0.13 -3.57 5.62 30.65 0.17 -3.39 16 23 C 0.07 1.42 6.55 86.33 0.57 1.98 16 24 N -0.69 -12.64 6.50 -491.69 -3.20 -15.83 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.39 13.07 8.61 -92.71 -0.80 12.27 16 31 H 0.11 4.39 6.05 -2.91 -0.02 4.37 16 32 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.10 5.58 6.18 -2.91 -0.02 5.56 16 34 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 35 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.06 1.77 8.14 -2.38 -0.02 1.76 16 37 H 0.05 1.64 7.69 -2.39 -0.02 1.62 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.35 4.90 8.79 -89.69 -0.79 4.11 16 Total: -1.00 -62.80 318.33 0.28 -62.53 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.55 Total: 38.16 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 3.43 Total: -53.24 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -4.63 Total: -89.12 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -62.80 0.28 -62.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.675 kcal (2) G-P(sol) polarization free energy of solvation -62.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds