Wall clock time and date at job start Mon Mar 30 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46568 * 2 1 4 4 C 1.53040 * 109.46224 * 119.97594 * 2 1 3 5 5 C 1.53117 * 109.28209 * 179.18400 * 4 2 1 6 6 H 1.09002 * 109.52159 * 62.31328 * 5 4 2 7 7 N 1.46498 * 109.52622 * 182.44501 * 5 4 2 8 8 C 1.39686 * 119.99899 * 205.27821 * 7 5 4 9 9 C 1.39334 * 119.95221 * 359.72442 * 8 7 5 10 10 C 1.38473 * 120.42278 * 179.97438 * 9 8 7 11 11 C 1.37691 * 120.32735 * 359.97438 * 10 9 8 12 12 C 1.40750 * 119.88955 * 0.02562 * 11 10 9 13 13 C 1.41416 * 120.20369 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99969 * 24.33977 * 13 12 11 15 15 C 1.39927 * 119.99618 * 204.33554 * 13 12 11 16 16 N 1.30832 * 120.00241 * 17.74047 * 15 13 12 17 17 Si 1.86805 * 119.99802 * 197.73579 * 15 13 12 18 18 H 1.48498 * 109.46808 * 60.00534 * 17 15 13 19 19 H 1.48505 * 109.46984 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47243 * 300.00401 * 17 15 13 21 21 C 1.38280 * 119.94885 * 179.44421 * 8 7 5 22 22 C 1.53121 * 109.16187 * 302.35328 * 5 4 2 23 23 C 1.53032 * 109.28159 * 57.64713 * 22 5 4 24 24 N 1.46845 * 109.52695 * 300.82377 * 23 22 5 25 25 H 1.08999 * 109.47796 * 300.02120 * 1 2 3 26 26 H 1.08999 * 109.47099 * 60.02179 * 1 2 3 27 27 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.50113 * 59.24889 * 4 2 1 29 29 H 1.08996 * 109.53655 * 299.15442 * 4 2 1 30 30 H 0.97003 * 119.99796 * 25.00040 * 7 5 4 31 31 H 1.07992 * 119.78860 * 359.95141 * 9 8 7 32 32 H 1.08001 * 119.84151 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.05530 * 180.02562 * 11 10 9 34 34 H 0.97003 * 120.00054 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.16242 * 0.02806 * 21 8 7 36 36 H 1.08999 * 109.50428 * 177.59271 * 22 5 4 37 37 H 1.09007 * 109.50054 * 297.70847 * 22 5 4 38 38 H 1.09001 * 109.46720 * 180.80483 * 23 22 5 39 39 H 1.09004 * 109.46227 * 60.84253 * 23 22 5 40 40 H 1.00901 * 111.00114 * 185.83209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7364 1.2355 6 1 3.9458 0.2866 1.2682 7 7 4.0641 -1.4761 2.3999 8 6 5.3361 -1.2073 2.9106 9 6 6.1373 -0.2394 2.3083 10 6 7.3996 0.0353 2.8068 11 6 7.8770 -0.6453 3.9044 12 6 7.0790 -1.6257 4.5234 13 6 7.5624 -2.3283 5.6514 14 1 8.3252 -1.8875 6.2761 15 6 7.0523 -3.5947 5.9582 16 7 6.4051 -4.2772 5.0488 17 14 7.2955 -4.3108 7.6663 18 1 6.6662 -3.4174 8.6717 19 1 6.6659 -5.6541 7.7341 20 1 8.7481 -4.4306 7.9507 21 6 5.7961 -1.8980 4.0167 22 6 4.0546 -1.4191 -0.0469 23 6 3.4863 -0.6779 -1.2592 24 7 2.0191 -0.6918 -1.1994 25 1 -0.3634 0.5141 0.8897 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.6657 -1.7447 1.2576 29 1 1.6895 -0.1989 2.1403 30 1 3.5057 -2.1497 2.8187 31 1 5.7716 0.2997 1.4470 32 1 8.0129 0.7872 2.3324 33 1 8.8620 -0.4272 4.2898 34 1 6.0512 -5.1549 5.2616 35 1 5.1744 -2.6455 4.4868 36 1 5.1437 -1.3952 -0.0834 37 1 3.7121 -2.4539 -0.0596 38 1 3.8172 -1.1701 -2.1737 39 1 3.8403 0.3530 -1.2533 40 1 1.6194 -0.2924 -2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692127815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:27 Heat of formation + Delta-G solvation = 8.614340 kcal Electronic energy + Delta-G solvation = -19307.722158 eV Core-core repulsion = 16506.878216 eV Total energy + Delta-G solvation = -2800.843942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.13991 -37.44461 -34.82208 -33.26939 -32.25498 -30.63130 -29.39972 -27.33074 -26.60689 -25.16820 -22.98070 -21.61157 -21.01352 -19.74837 -19.48387 -17.14881 -16.43411 -15.80430 -15.08862 -15.00802 -14.77916 -14.25134 -13.84078 -13.75483 -13.44783 -12.73635 -12.58594 -12.28965 -12.20065 -12.01965 -11.86269 -11.54238 -11.37070 -11.12365 -10.98866 -10.97891 -10.64688 -10.49279 -10.34931 -10.20791 -9.56356 -9.39520 -9.18960 -8.70478 -8.50320 -7.26958 -6.68962 -6.10891 -4.27473 2.91784 3.11247 3.14686 3.27245 3.38200 4.00622 4.08927 4.26130 4.75176 4.83472 4.95466 5.08055 5.28305 5.31816 5.52389 5.52777 5.63567 5.71866 5.81679 5.85564 5.87561 6.02190 6.09871 6.24076 6.31801 6.38396 6.53972 6.68401 6.93198 7.01617 7.15937 7.18031 7.32035 7.42959 7.49323 7.86494 8.00435 8.15801 8.21674 8.53705 8.77418 8.88738 9.05465 9.16789 10.29681 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.004591 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.595052 B = 6096.982808 C = 6632.024087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.037 0.963 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.068 0.932 7 N -0.755 5.755 8 C 0.218 3.782 9 C -0.301 4.301 10 C -0.066 4.066 11 C -0.259 4.259 12 C 0.140 3.860 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.079 3.921 16 N -0.793 5.793 17 Si 0.904 3.096 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.232 4.232 22 C -0.132 4.132 23 C 0.061 3.939 24 N -0.686 5.686 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.389 0.611 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.278 0.722 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 4.976 -8.675 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.055 0.945 4 C -0.157 4.157 5 C 0.055 3.945 6 H 0.086 0.914 7 N -0.386 5.386 8 C 0.119 3.881 9 C -0.323 4.323 10 C -0.085 4.085 11 C -0.279 4.279 12 C 0.137 3.863 13 C -0.496 4.496 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.418 5.418 17 Si 0.729 3.271 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.256 4.256 22 C -0.171 4.171 23 C -0.068 4.068 24 N -0.318 5.318 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.222 0.778 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.793 4.248 -8.554 13.679 hybrid contribution 0.144 0.216 0.551 0.609 sum -9.649 4.464 -8.003 13.307 Atomic orbital electron populations 1.21814 0.94391 1.02564 1.01480 1.21409 0.94972 0.95145 0.90767 0.94500 1.21897 0.95537 1.01619 0.96614 1.20630 0.92191 0.95763 0.85888 0.91379 1.44478 1.16417 1.44664 1.33083 1.17648 0.83851 0.93668 0.92886 1.19889 0.97836 1.07903 1.06692 1.20278 0.94592 0.97610 0.96040 1.20851 0.99798 1.06147 1.01139 1.17311 0.89696 0.88989 0.90341 1.19524 1.19983 1.00543 1.09581 0.90669 1.25864 0.93215 0.96849 0.97944 1.69862 1.27916 1.10891 1.33146 0.86450 0.79529 0.78121 0.83042 1.18938 1.20479 1.19111 1.20726 0.97976 1.06603 1.00314 1.22118 1.00928 1.00333 0.93767 1.21902 0.87103 0.98632 0.99202 1.60350 1.07630 1.59365 1.04486 0.92097 0.92931 0.91738 0.90964 0.91324 0.77803 0.89689 0.89765 0.89476 0.91160 0.86583 0.90930 0.91305 0.90924 0.95371 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.43 37.15 0.35 -0.96 16 2 C 0.09 0.97 3.04 -67.72 -0.21 0.76 16 3 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -1.55 4.85 -26.65 -0.13 -1.68 16 5 C 0.16 2.58 2.21 -67.81 -0.15 2.43 16 6 H 0.07 1.16 6.46 -51.93 -0.34 0.82 16 7 N -0.75 -14.59 5.25 -52.10 -0.27 -14.86 16 8 C 0.22 5.13 6.63 -83.86 -0.56 4.58 16 9 C -0.30 -6.90 8.92 -39.09 -0.35 -7.25 16 10 C -0.07 -1.56 10.01 -39.69 -0.40 -1.95 16 11 C -0.26 -6.64 9.79 -38.83 -0.38 -7.02 16 12 C 0.14 3.85 5.57 -106.85 -0.60 3.26 16 13 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 16 N -0.79 -20.95 10.96 55.55 0.61 -20.34 16 17 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 18 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.23 -6.15 8.53 -38.68 -0.33 -6.48 16 22 C -0.13 -2.00 5.63 -26.65 -0.15 -2.15 16 23 C 0.06 0.74 6.55 -3.84 -0.03 0.72 16 24 N -0.69 -7.61 6.50 -106.76 -0.69 -8.30 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.39 7.26 8.61 -40.82 -0.35 6.91 16 31 H 0.08 1.77 6.07 -52.49 -0.32 1.45 16 32 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 36 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.34 3.04 8.79 -39.29 -0.35 2.70 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -28.24 318.43 -10.22 -38.46 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.28 Total: 13.10 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -3.35 Total: -26.93 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.36 Total: -43.51 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.24 -10.22 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.071 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds