Wall clock time and date at job start Mon Mar 30 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46568 * 2 1 4 4 C 1.53040 * 109.46224 * 119.97594 * 2 1 3 5 5 C 1.53117 * 109.28209 * 179.18400 * 4 2 1 6 6 H 1.09002 * 109.52159 * 62.31328 * 5 4 2 7 7 N 1.46498 * 109.52622 * 182.44501 * 5 4 2 8 8 C 1.39686 * 119.99899 * 205.27821 * 7 5 4 9 9 C 1.39334 * 119.95221 * 359.72442 * 8 7 5 10 10 C 1.38473 * 120.42278 * 179.97438 * 9 8 7 11 11 C 1.37691 * 120.32735 * 359.97438 * 10 9 8 12 12 C 1.40750 * 119.88955 * 0.02562 * 11 10 9 13 13 C 1.41416 * 120.20369 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99969 * 24.33977 * 13 12 11 15 15 C 1.39927 * 119.99618 * 204.33554 * 13 12 11 16 16 N 1.30832 * 120.00241 * 17.74047 * 15 13 12 17 17 Si 1.86805 * 119.99802 * 197.73579 * 15 13 12 18 18 H 1.48498 * 109.46808 * 60.00534 * 17 15 13 19 19 H 1.48505 * 109.46984 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47243 * 300.00401 * 17 15 13 21 21 C 1.38280 * 119.94885 * 179.44421 * 8 7 5 22 22 C 1.53121 * 109.16187 * 302.35328 * 5 4 2 23 23 C 1.53032 * 109.28159 * 57.64713 * 22 5 4 24 24 N 1.46845 * 109.52695 * 300.82377 * 23 22 5 25 25 H 1.08999 * 109.47796 * 300.02120 * 1 2 3 26 26 H 1.08999 * 109.47099 * 60.02179 * 1 2 3 27 27 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.50113 * 59.24889 * 4 2 1 29 29 H 1.08996 * 109.53655 * 299.15442 * 4 2 1 30 30 H 0.97003 * 119.99796 * 25.00040 * 7 5 4 31 31 H 1.07992 * 119.78860 * 359.95141 * 9 8 7 32 32 H 1.08001 * 119.84151 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.05530 * 180.02562 * 11 10 9 34 34 H 0.97003 * 120.00054 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.16242 * 0.02806 * 21 8 7 36 36 H 1.08999 * 109.50428 * 177.59271 * 22 5 4 37 37 H 1.09007 * 109.50054 * 297.70847 * 22 5 4 38 38 H 1.09001 * 109.46720 * 180.80483 * 23 22 5 39 39 H 1.09004 * 109.46227 * 60.84253 * 23 22 5 40 40 H 1.00901 * 111.00114 * 185.83209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7364 1.2355 6 1 3.9458 0.2866 1.2682 7 7 4.0641 -1.4761 2.3999 8 6 5.3361 -1.2073 2.9106 9 6 6.1373 -0.2394 2.3083 10 6 7.3996 0.0353 2.8068 11 6 7.8770 -0.6453 3.9044 12 6 7.0790 -1.6257 4.5234 13 6 7.5624 -2.3283 5.6514 14 1 8.3252 -1.8875 6.2761 15 6 7.0523 -3.5947 5.9582 16 7 6.4051 -4.2772 5.0488 17 14 7.2955 -4.3108 7.6663 18 1 6.6662 -3.4174 8.6717 19 1 6.6659 -5.6541 7.7341 20 1 8.7481 -4.4306 7.9507 21 6 5.7961 -1.8980 4.0167 22 6 4.0546 -1.4191 -0.0469 23 6 3.4863 -0.6779 -1.2592 24 7 2.0191 -0.6918 -1.1994 25 1 -0.3634 0.5141 0.8897 26 1 -0.3633 0.5135 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.6657 -1.7447 1.2576 29 1 1.6895 -0.1989 2.1403 30 1 3.5057 -2.1497 2.8187 31 1 5.7716 0.2997 1.4470 32 1 8.0129 0.7872 2.3324 33 1 8.8620 -0.4272 4.2898 34 1 6.0512 -5.1549 5.2616 35 1 5.1744 -2.6455 4.4868 36 1 5.1437 -1.3952 -0.0834 37 1 3.7121 -2.4539 -0.0596 38 1 3.8172 -1.1701 -2.1737 39 1 3.8403 0.3530 -1.2533 40 1 1.6194 -0.2924 -2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692127815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:26 Heat of formation + Delta-G solvation = -8.567717 kcal Electronic energy + Delta-G solvation = -19308.467228 eV Core-core repulsion = 16506.878216 eV Total energy + Delta-G solvation = -2801.589012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40839 -39.10897 -36.39690 -35.10463 -33.23134 -32.06624 -31.35178 -28.78621 -27.76772 -27.11394 -24.21662 -22.87102 -22.74278 -21.41349 -20.71233 -19.04739 -17.70428 -17.30075 -16.65142 -16.49601 -16.09195 -15.91615 -15.07555 -14.92566 -14.76722 -14.42634 -14.15693 -13.98442 -13.57153 -13.22117 -13.05534 -12.85791 -12.77321 -12.75818 -12.47506 -12.36243 -12.04094 -11.95481 -11.74444 -11.59712 -11.32928 -11.26496 -11.03857 -10.44746 -9.38958 -9.25362 -8.61873 -7.90347 -6.32345 1.09391 1.33581 1.38181 1.49562 1.59654 2.22971 2.75422 2.83064 3.22033 3.78358 3.83960 3.98199 4.02294 4.18740 4.38631 4.45106 4.48224 4.56371 4.58186 4.78346 4.80455 4.87137 4.94190 4.99517 5.03914 5.12392 5.17985 5.21050 5.29773 5.31918 5.39829 5.47983 5.61489 5.96336 6.08503 6.10772 6.21469 6.27500 6.55406 6.58482 6.94520 7.05438 7.06823 7.25458 8.38401 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028991 B = 0.004591 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.595052 B = 6096.982808 C = 6632.024087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.040 0.960 4 C -0.112 4.112 5 C 0.159 3.841 6 H 0.062 0.938 7 N -0.750 5.750 8 C 0.223 3.777 9 C -0.302 4.302 10 C -0.063 4.063 11 C -0.286 4.286 12 C 0.110 3.890 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.038 3.962 16 N -0.823 5.823 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.261 4.261 22 C -0.127 4.127 23 C 0.068 3.932 24 N -0.689 5.689 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.390 0.610 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.285 0.715 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 5.644 -9.683 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.058 0.942 4 C -0.150 4.150 5 C 0.054 3.946 6 H 0.080 0.920 7 N -0.380 5.380 8 C 0.122 3.878 9 C -0.324 4.324 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.107 3.893 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.286 4.286 22 C -0.166 4.166 23 C -0.061 4.061 24 N -0.323 5.323 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.100 4.931 -9.608 15.487 hybrid contribution 0.492 0.055 0.742 0.892 sum -10.608 4.986 -8.867 14.697 Atomic orbital electron populations 1.21767 0.92568 1.02639 1.02707 1.21405 0.96344 0.94727 0.89600 0.94193 1.21851 0.93116 1.01831 0.98215 1.20855 0.94184 0.94828 0.84770 0.91980 1.44625 1.14983 1.44639 1.33745 1.17757 0.85329 0.92836 0.91864 1.20198 0.97600 1.07540 1.07094 1.20644 0.95045 0.97425 0.95007 1.21014 1.00166 1.07011 1.02510 1.17707 0.90562 0.89966 0.91101 1.19797 1.21329 1.01905 1.10562 0.90992 1.26715 0.92430 0.96603 1.01930 1.69924 1.28403 1.11418 1.35111 0.85306 0.79718 0.77586 0.77364 1.18596 1.19149 1.18427 1.20661 0.98034 1.07724 1.02143 1.22013 0.99681 1.00063 0.94887 1.21796 0.87789 0.98556 0.98005 1.60289 1.06918 1.59807 1.05295 0.91465 0.91186 0.92218 0.91415 0.91084 0.77649 0.87201 0.86448 0.89219 0.90459 0.88328 0.93049 0.92540 0.89524 0.94738 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.43 71.98 0.68 -1.43 16 2 C 0.09 1.75 3.04 44.94 0.14 1.88 16 3 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -2.75 4.85 30.65 0.15 -2.60 16 5 C 0.16 4.90 2.21 45.07 0.10 5.00 16 6 H 0.06 2.01 6.46 -2.39 -0.02 2.00 16 7 N -0.75 -29.05 5.25 -318.74 -1.67 -30.73 16 8 C 0.22 10.64 6.63 38.16 0.25 10.89 16 9 C -0.30 -13.64 8.92 22.59 0.20 -13.44 16 10 C -0.06 -2.90 10.01 22.20 0.22 -2.68 16 11 C -0.29 -15.03 9.79 22.75 0.22 -14.81 16 12 C 0.11 6.28 5.57 -21.31 -0.12 6.16 16 13 C -0.51 -28.81 9.05 23.46 0.21 -28.59 16 14 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 15 C 0.04 2.00 5.14 85.25 0.44 2.44 16 16 N -0.82 -44.73 10.96 21.82 0.24 -44.49 16 17 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 C -0.26 -14.35 8.53 22.86 0.20 -14.16 16 22 C -0.13 -3.71 5.63 30.65 0.17 -3.54 16 23 C 0.07 1.49 6.55 86.32 0.57 2.06 16 24 N -0.69 -13.32 6.50 -491.68 -3.20 -16.52 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.39 14.80 8.61 -92.71 -0.80 14.00 16 31 H 0.11 4.37 6.07 -2.91 -0.02 4.35 16 32 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 35 H 0.10 5.65 6.16 -2.91 -0.02 5.64 16 36 H 0.05 1.71 7.75 -2.39 -0.02 1.69 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.35 5.14 8.79 -89.69 -0.79 4.36 16 Total: -1.00 -62.46 318.43 0.28 -62.19 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.55 Total: 40.64 kcal Atomic # 6 Polarization: -56.26 SS G_CDS: 3.43 Total: -52.84 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -4.63 Total: -91.74 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -62.46 0.28 -62.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.619 kcal (2) G-P(sol) polarization free energy of solvation -62.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds