Wall clock time and date at job start Mon Mar 30 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.45880 * 2 1 4 4 C 1.53040 * 109.46110 * 240.02394 * 2 1 3 5 5 C 1.53121 * 109.27443 * 180.80646 * 4 2 1 6 6 H 1.09002 * 109.51670 * 177.62505 * 5 4 2 7 7 N 1.46503 * 109.52058 * 297.74380 * 5 4 2 8 8 C 1.39684 * 119.99743 * 204.87509 * 7 5 4 9 9 C 1.39329 * 119.95279 * 0.02819 * 8 7 5 10 10 C 1.38485 * 120.42521 * 179.97438 * 9 8 7 11 11 C 1.37693 * 120.32172 * 359.73550 * 10 9 8 12 12 C 1.40755 * 119.89074 * 0.51697 * 11 10 9 13 13 C 1.41413 * 120.20259 * 179.76585 * 12 11 10 14 14 H 1.08001 * 120.00118 * 24.19378 * 13 12 11 15 15 C 1.39922 * 119.99590 * 204.46698 * 13 12 11 16 16 N 1.30829 * 120.00389 * 17.45560 * 15 13 12 17 17 Si 1.86809 * 119.99917 * 197.45585 * 15 13 12 18 18 H 1.48501 * 109.46843 * 59.99867 * 17 15 13 19 19 H 1.48498 * 109.47004 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46642 * 300.00256 * 17 15 13 21 21 C 1.38279 * 119.94722 * 179.97438 * 8 7 5 22 22 C 1.53111 * 109.21783 * 57.68533 * 5 4 2 23 23 C 1.53181 * 109.20387 * 302.37353 * 22 5 4 24 24 N 1.46842 * 109.46138 * 119.96830 * 2 1 3 25 25 H 1.09005 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47854 * 299.97700 * 1 2 3 27 27 H 1.09007 * 109.47585 * 59.97770 * 1 2 3 28 28 H 1.08993 * 109.50532 * 60.86491 * 4 2 1 29 29 H 1.08995 * 109.53360 * 300.75994 * 4 2 1 30 30 H 0.97003 * 119.99665 * 24.88063 * 7 5 4 31 31 H 1.07996 * 119.79140 * 359.95270 * 9 8 7 32 32 H 1.07999 * 119.83887 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.05448 * 180.25586 * 11 10 9 34 34 H 0.96998 * 120.00634 * 179.97438 * 16 15 13 35 35 H 1.08003 * 120.16491 * 0.02562 * 21 8 7 36 36 H 1.09000 * 109.50632 * 62.24674 * 22 5 4 37 37 H 1.08994 * 109.50592 * 182.37419 * 22 5 4 38 38 H 1.08991 * 109.44610 * 299.11070 * 23 22 5 39 39 H 1.09003 * 109.43002 * 179.15780 * 23 22 5 40 40 H 1.00903 * 111.00473 * 57.66484 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 1 3.9378 -1.2854 -2.1025 7 7 4.0745 0.6390 -1.2782 8 6 5.3498 0.9003 -1.7847 9 6 6.1417 -0.1475 -2.2497 10 6 7.4073 0.1005 -2.7544 11 6 7.8948 1.3871 -2.8071 12 6 7.1083 2.4551 -2.3361 13 6 7.6044 3.7786 -2.3826 14 1 8.3698 4.0436 -3.0970 15 6 7.1078 4.7432 -1.4991 16 7 6.4571 4.3742 -0.4258 17 14 7.3739 6.5583 -1.8521 18 1 6.7475 6.9065 -3.1527 19 1 6.7549 7.3684 -0.7724 20 1 8.8301 6.8424 -1.9122 21 6 5.8238 2.1986 -1.8250 22 6 4.0561 -1.4192 0.0460 23 6 3.4864 -0.6775 1.2591 24 7 2.0192 -0.6916 1.1994 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5135 0.8902 27 1 -0.3634 0.5142 -0.8898 28 1 1.6895 -0.1983 -2.1399 29 1 1.6659 -1.7447 -1.2582 30 1 3.5223 1.3679 -0.9545 31 1 5.7665 -1.1596 -2.2160 32 1 8.0129 -0.7188 -3.1127 33 1 8.8808 1.5760 -3.2054 34 1 6.1131 5.0429 0.1869 35 1 5.2106 3.0117 -1.4653 36 1 3.7137 -2.4540 0.0589 37 1 5.1452 -1.3951 0.0813 38 1 3.8403 0.3534 1.2531 39 1 3.8174 -1.1698 2.1735 40 1 1.6647 -1.6353 1.2427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692127816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:30 Heat of formation + Delta-G solvation = 9.379207 kcal Electronic energy + Delta-G solvation = -19654.820977 eV Core-core repulsion = 16854.010203 eV Total energy + Delta-G solvation = -2800.810775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.48000 -37.38025 -34.55505 -33.21054 -32.18366 -30.51161 -29.41480 -27.20564 -26.63544 -25.19959 -23.20737 -21.56490 -20.88400 -20.60180 -19.07988 -17.10396 -16.15423 -15.37536 -15.34699 -14.92113 -14.57486 -14.39878 -14.08288 -13.54982 -13.26010 -12.84084 -12.67077 -12.24050 -12.17315 -11.99015 -11.84967 -11.60284 -11.36838 -11.09518 -11.01338 -10.88552 -10.66156 -10.61469 -10.38895 -10.34941 -9.59062 -9.41449 -9.23245 -8.75687 -8.23879 -7.28451 -6.70235 -6.13612 -4.28895 2.90574 3.10482 3.13811 3.25450 3.36653 3.99538 4.25587 4.32650 4.74181 4.81284 4.97671 5.08040 5.24331 5.36885 5.49310 5.60790 5.68741 5.71559 5.85406 5.89629 6.03313 6.08998 6.14864 6.20715 6.29459 6.34452 6.38545 6.62246 6.91347 7.12282 7.14344 7.16459 7.40817 7.45955 7.46858 7.84121 7.98515 8.13659 8.19850 8.51948 8.73267 8.86783 9.03909 9.14745 10.28248 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.005645 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.202765 B = 4959.337769 C = 5760.257593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.158 4.158 5 C 0.162 3.838 6 H 0.072 0.928 7 N -0.751 5.751 8 C 0.218 3.782 9 C -0.300 4.300 10 C -0.066 4.066 11 C -0.259 4.259 12 C 0.140 3.860 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.792 5.792 17 Si 0.904 3.096 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.232 4.232 22 C -0.171 4.171 23 C 0.061 3.939 24 N -0.681 5.681 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.387 0.613 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.278 0.722 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -7.505 1.842 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.100 0.900 4 C -0.198 4.198 5 C 0.055 3.945 6 H 0.090 0.910 7 N -0.385 5.385 8 C 0.119 3.881 9 C -0.323 4.323 10 C -0.085 4.085 11 C -0.279 4.279 12 C 0.137 3.863 13 C -0.496 4.496 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.418 5.418 17 Si 0.729 3.271 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.255 4.255 22 C -0.212 4.212 23 C -0.069 4.069 24 N -0.309 5.309 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.222 0.778 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.764 -7.033 2.454 12.281 hybrid contribution 0.271 0.353 -0.652 0.789 sum -9.493 -6.680 1.802 11.747 Atomic orbital electron populations 1.21800 0.94609 1.01657 1.02027 1.21534 0.94832 0.98684 0.87769 0.90050 1.22549 0.96077 1.01236 0.99904 1.20585 0.91878 0.85285 0.96790 0.91013 1.44518 1.16253 1.05588 1.72133 1.17635 0.83792 0.93962 0.92688 1.19887 0.97776 0.95785 1.18856 1.20282 0.94581 0.95551 0.98110 1.20855 0.99849 0.92596 1.14621 1.17313 0.89735 0.92200 0.87087 1.19522 1.19879 0.93777 1.16390 0.90684 1.25860 0.93234 1.01196 0.93603 1.69852 1.28057 1.36045 1.07813 0.86448 0.79561 0.82073 0.79052 1.18953 1.20472 1.19102 1.20712 0.97840 0.93094 1.13900 1.22729 1.02709 0.98476 0.97289 1.21961 0.86446 1.01894 0.96586 1.60761 1.09341 1.21710 1.39115 0.92996 0.91954 0.92251 0.91062 0.91448 0.77835 0.89692 0.89781 0.89492 0.91154 0.86629 0.92560 0.90604 0.90145 0.91343 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.47 37.16 0.35 -1.07 16 2 C 0.08 0.98 2.87 -67.73 -0.19 0.79 16 3 H 0.08 1.13 6.64 -51.93 -0.34 0.79 16 4 C -0.16 -1.93 5.02 -26.65 -0.13 -2.06 16 5 C 0.16 2.45 2.49 -67.81 -0.17 2.28 16 6 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 7 N -0.75 -13.96 4.52 -52.10 -0.24 -14.19 16 8 C 0.22 5.02 6.63 -83.86 -0.56 4.46 16 9 C -0.30 -6.79 8.88 -39.08 -0.35 -7.14 16 10 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 11 C -0.26 -6.59 9.79 -38.83 -0.38 -6.97 16 12 C 0.14 3.82 5.57 -106.85 -0.60 3.23 16 13 C -0.47 -12.67 9.05 -37.74 -0.34 -13.01 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 15 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 16 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 17 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.23 -6.05 8.53 -38.68 -0.33 -6.38 16 22 C -0.17 -2.43 5.70 -26.58 -0.15 -2.58 16 23 C 0.06 0.84 6.41 -3.76 -0.02 0.81 16 24 N -0.68 -8.28 6.50 -106.68 -0.69 -8.97 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 7.08 7.02 -40.82 -0.29 6.80 16 31 H 0.08 1.74 6.15 -52.49 -0.32 1.42 16 32 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 34 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 35 H 0.12 3.13 6.16 -52.48 -0.32 2.80 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.26 7.79 -51.93 -0.40 0.86 16 38 H 0.08 1.33 7.68 -51.93 -0.40 0.93 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.33 3.51 8.79 -39.29 -0.35 3.17 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -27.44 314.47 -10.09 -37.53 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.12 Total: 14.71 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -3.36 Total: -27.67 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.32 Total: -43.32 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.44 -10.09 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.904 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds