Wall clock time and date at job start Mon Mar 30 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.45880 * 2 1 4 4 C 1.53040 * 109.46110 * 240.02394 * 2 1 3 5 5 C 1.53121 * 109.27443 * 180.80646 * 4 2 1 6 6 H 1.09002 * 109.51670 * 177.62505 * 5 4 2 7 7 N 1.46503 * 109.52058 * 297.74380 * 5 4 2 8 8 C 1.39684 * 119.99743 * 204.87509 * 7 5 4 9 9 C 1.39329 * 119.95279 * 0.02819 * 8 7 5 10 10 C 1.38485 * 120.42521 * 179.97438 * 9 8 7 11 11 C 1.37693 * 120.32172 * 359.73550 * 10 9 8 12 12 C 1.40755 * 119.89074 * 0.51697 * 11 10 9 13 13 C 1.41413 * 120.20259 * 179.76585 * 12 11 10 14 14 H 1.08001 * 120.00118 * 24.19378 * 13 12 11 15 15 C 1.39922 * 119.99590 * 204.46698 * 13 12 11 16 16 N 1.30829 * 120.00389 * 17.45560 * 15 13 12 17 17 Si 1.86809 * 119.99917 * 197.45585 * 15 13 12 18 18 H 1.48501 * 109.46843 * 59.99867 * 17 15 13 19 19 H 1.48498 * 109.47004 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46642 * 300.00256 * 17 15 13 21 21 C 1.38279 * 119.94722 * 179.97438 * 8 7 5 22 22 C 1.53111 * 109.21783 * 57.68533 * 5 4 2 23 23 C 1.53181 * 109.20387 * 302.37353 * 22 5 4 24 24 N 1.46842 * 109.46138 * 119.96830 * 2 1 3 25 25 H 1.09005 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47854 * 299.97700 * 1 2 3 27 27 H 1.09007 * 109.47585 * 59.97770 * 1 2 3 28 28 H 1.08993 * 109.50532 * 60.86491 * 4 2 1 29 29 H 1.08995 * 109.53360 * 300.75994 * 4 2 1 30 30 H 0.97003 * 119.99665 * 24.88063 * 7 5 4 31 31 H 1.07996 * 119.79140 * 359.95270 * 9 8 7 32 32 H 1.07999 * 119.83887 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.05448 * 180.25586 * 11 10 9 34 34 H 0.96998 * 120.00634 * 179.97438 * 16 15 13 35 35 H 1.08003 * 120.16491 * 0.02562 * 21 8 7 36 36 H 1.09000 * 109.50632 * 62.24674 * 22 5 4 37 37 H 1.08994 * 109.50592 * 182.37419 * 22 5 4 38 38 H 1.08991 * 109.44610 * 299.11070 * 23 22 5 39 39 H 1.09003 * 109.43002 * 179.15780 * 23 22 5 40 40 H 1.00903 * 111.00473 * 57.66484 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 1 3.9378 -1.2854 -2.1025 7 7 4.0745 0.6390 -1.2782 8 6 5.3498 0.9003 -1.7847 9 6 6.1417 -0.1475 -2.2497 10 6 7.4073 0.1005 -2.7544 11 6 7.8948 1.3871 -2.8071 12 6 7.1083 2.4551 -2.3361 13 6 7.6044 3.7786 -2.3826 14 1 8.3698 4.0436 -3.0970 15 6 7.1078 4.7432 -1.4991 16 7 6.4571 4.3742 -0.4258 17 14 7.3739 6.5583 -1.8521 18 1 6.7475 6.9065 -3.1527 19 1 6.7549 7.3684 -0.7724 20 1 8.8301 6.8424 -1.9122 21 6 5.8238 2.1986 -1.8250 22 6 4.0561 -1.4192 0.0460 23 6 3.4864 -0.6775 1.2591 24 7 2.0192 -0.6916 1.1994 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5135 0.8902 27 1 -0.3634 0.5142 -0.8898 28 1 1.6895 -0.1983 -2.1399 29 1 1.6659 -1.7447 -1.2582 30 1 3.5223 1.3679 -0.9545 31 1 5.7665 -1.1596 -2.2160 32 1 8.0129 -0.7188 -3.1127 33 1 8.8808 1.5760 -3.2054 34 1 6.1131 5.0429 0.1869 35 1 5.2106 3.0117 -1.4653 36 1 3.7137 -2.4540 0.0589 37 1 5.1452 -1.3951 0.0813 38 1 3.8403 0.3534 1.2531 39 1 3.8174 -1.1698 2.1735 40 1 1.6647 -1.6353 1.2427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692127816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:30 Heat of formation + Delta-G solvation = -6.937095 kcal Electronic energy + Delta-G solvation = -19655.528505 eV Core-core repulsion = 16854.010203 eV Total energy + Delta-G solvation = -2801.518303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72843 -39.10166 -36.15902 -34.98222 -33.23315 -31.92027 -31.34916 -28.64791 -27.82182 -27.12560 -24.42853 -22.84283 -22.50198 -22.19242 -20.53355 -18.94015 -17.78448 -16.85537 -16.66550 -16.38677 -16.11462 -15.78762 -15.27486 -14.85838 -14.77321 -14.46837 -14.07643 -13.90041 -13.51104 -13.34708 -13.11290 -12.88106 -12.75460 -12.73436 -12.54882 -12.34715 -12.05780 -11.86696 -11.78365 -11.62532 -11.45065 -11.26838 -11.06241 -10.49061 -9.28985 -9.22965 -8.61867 -7.89242 -6.32432 1.09376 1.33723 1.37439 1.48762 1.59166 2.22315 2.78007 2.84291 3.30882 3.78742 3.84876 3.90172 3.99816 4.13728 4.35776 4.43350 4.49674 4.60708 4.72784 4.73187 4.86060 4.91748 4.95372 4.97650 5.01508 5.15341 5.17525 5.20561 5.26354 5.31983 5.35641 5.47376 5.60901 5.96488 6.08730 6.11215 6.21328 6.27388 6.57836 6.58722 6.94287 7.05853 7.06589 7.24926 8.37919 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.005645 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.202765 B = 4959.337769 C = 5760.257593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.055 0.945 4 C -0.147 4.147 5 C 0.154 3.846 6 H 0.067 0.933 7 N -0.744 5.744 8 C 0.225 3.775 9 C -0.300 4.300 10 C -0.063 4.063 11 C -0.287 4.287 12 C 0.109 3.891 13 C -0.506 4.506 14 H 0.071 0.929 15 C 0.038 3.962 16 N -0.822 5.822 17 Si 0.979 3.021 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.261 4.261 22 C -0.163 4.163 23 C 0.067 3.933 24 N -0.678 5.678 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.387 0.613 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.284 0.716 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -8.873 1.977 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.074 0.926 4 C -0.187 4.187 5 C 0.049 3.951 6 H 0.085 0.915 7 N -0.375 5.375 8 C 0.124 3.876 9 C -0.323 4.323 10 C -0.082 4.082 11 C -0.308 4.308 12 C 0.106 3.894 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.448 5.448 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.285 4.285 22 C -0.204 4.204 23 C -0.063 4.063 24 N -0.308 5.308 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.221 0.779 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.364 -8.444 2.601 14.395 hybrid contribution 0.694 0.632 -0.659 1.147 sum -10.670 -7.811 1.942 13.366 Atomic orbital electron populations 1.21740 0.92546 1.02890 1.02227 1.21512 0.96368 0.97280 0.87619 0.92649 1.22485 0.93414 1.02879 0.99872 1.20865 0.94095 0.83021 0.97127 0.91510 1.44634 1.14647 1.07459 1.70804 1.17734 0.85357 0.93087 0.91466 1.20203 0.97471 0.96798 1.17844 1.20647 0.95094 0.95557 0.96901 1.21007 1.00203 0.93439 1.16156 1.17704 0.90632 0.93081 0.87933 1.19782 1.21204 0.94964 1.17589 0.91097 1.26700 0.92524 1.05661 0.92818 1.69919 1.28592 1.37759 1.08486 0.85317 0.79707 0.75964 0.79053 1.18640 1.19177 1.18435 1.20634 0.97865 0.94053 1.15936 1.22652 1.01012 1.00067 0.96686 1.21810 0.87602 0.99822 0.97072 1.60699 1.08047 1.22820 1.39261 0.91190 0.92245 0.91657 0.91190 0.88679 0.77861 0.87029 0.86553 0.89367 0.90520 0.88514 0.89514 0.93223 0.93658 0.90166 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.47 71.98 0.68 -1.64 16 2 C 0.08 1.82 2.87 44.94 0.13 1.95 16 3 H 0.06 1.52 6.64 -2.39 -0.02 1.51 16 4 C -0.15 -3.19 5.02 30.65 0.15 -3.03 16 5 C 0.15 4.41 2.49 45.07 0.11 4.52 16 6 H 0.07 2.01 6.48 -2.39 -0.02 1.99 16 7 N -0.74 -27.69 4.52 -318.75 -1.44 -29.13 16 8 C 0.22 10.50 6.63 38.16 0.25 10.75 16 9 C -0.30 -13.36 8.88 22.59 0.20 -13.15 16 10 C -0.06 -2.92 10.02 22.20 0.22 -2.69 16 11 C -0.29 -15.05 9.79 22.76 0.22 -14.83 16 12 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 13 C -0.51 -28.75 9.05 23.46 0.21 -28.53 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.04 1.99 5.14 85.25 0.44 2.43 16 16 N -0.82 -44.61 10.95 21.82 0.24 -44.37 16 17 Si 0.98 39.81 29.60 68.60 2.03 41.84 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 21 C -0.26 -14.20 8.53 22.86 0.19 -14.00 16 22 C -0.16 -4.31 5.70 30.69 0.18 -4.14 16 23 C 0.07 1.76 6.41 86.37 0.55 2.32 16 24 N -0.68 -14.94 6.50 -491.44 -3.20 -18.14 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.39 14.51 7.02 -92.71 -0.65 13.86 16 31 H 0.11 4.32 6.15 -2.91 -0.02 4.30 16 32 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 35 H 0.10 5.53 6.16 -2.91 -0.02 5.52 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.58 7.79 -2.39 -0.02 1.57 16 38 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.35 6.06 8.79 -89.69 -0.79 5.27 16 Total: -1.00 -61.79 314.47 0.67 -61.12 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.40 Total: 42.61 kcal Atomic # 6 Polarization: -57.36 SS G_CDS: 3.43 Total: -53.93 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.40 Total: -91.64 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.79 0.67 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.182 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds