Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46091 * 2 1 4 4 C 1.53034 * 109.46371 * 119.98172 * 2 1 3 5 5 C 1.53110 * 109.27784 * 179.19389 * 4 2 1 6 6 H 1.09005 * 109.52026 * 182.37850 * 5 4 2 7 7 N 1.46495 * 109.52549 * 62.25086 * 5 4 2 8 8 C 1.39692 * 120.00372 * 155.12048 * 7 5 4 9 9 C 1.39332 * 119.94860 * 0.02562 * 8 7 5 10 10 C 1.38471 * 120.42662 * 179.97438 * 9 8 7 11 11 C 1.37692 * 120.32077 * 359.97438 * 10 9 8 12 12 C 1.40747 * 119.89764 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21053 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99699 * 204.45027 * 13 12 11 15 15 C 1.39923 * 119.99817 * 24.45616 * 13 12 11 16 16 N 1.30829 * 120.00552 * 17.87227 * 15 13 12 17 17 Si 1.86807 * 119.99725 * 197.87517 * 15 13 12 18 18 H 1.48494 * 109.47386 * 59.99759 * 17 15 13 19 19 H 1.48501 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46746 * 299.99604 * 17 15 13 21 21 C 1.38274 * 119.95033 * 179.97438 * 8 7 5 22 22 C 1.53122 * 109.21587 * 302.31217 * 5 4 2 23 23 C 1.53173 * 109.20387 * 57.62809 * 22 5 4 24 24 N 1.46849 * 109.45880 * 240.03504 * 2 1 3 25 25 H 1.09003 * 109.47071 * 300.02051 * 1 2 3 26 26 H 1.08997 * 109.47374 * 60.01519 * 1 2 3 27 27 H 1.08998 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.50179 * 59.25010 * 4 2 1 29 29 H 1.09002 * 109.53581 * 299.15755 * 4 2 1 30 30 H 0.96998 * 120.00091 * 335.13126 * 7 5 4 31 31 H 1.08002 * 119.78547 * 0.25067 * 9 8 7 32 32 H 1.07998 * 119.84371 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.04919 * 179.97438 * 11 10 9 34 34 H 0.97001 * 120.00613 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.16744 * 0.04756 * 21 8 7 36 36 H 1.08992 * 109.50201 * 177.62771 * 22 5 4 37 37 H 1.09003 * 109.49980 * 297.74884 * 22 5 4 38 38 H 1.09003 * 109.44457 * 180.83806 * 23 22 5 39 39 H 1.08990 * 109.44887 * 60.88423 * 23 22 5 40 40 H 1.00897 * 110.99781 * 302.33937 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2498 5 6 3.5709 -0.7362 1.2354 6 1 3.9379 -1.2857 2.1023 7 7 4.0746 0.6388 1.2781 8 6 5.3499 0.9001 1.7847 9 6 6.1422 -0.1478 2.2488 10 6 7.4080 0.0999 2.7525 11 6 7.8980 1.3858 2.7998 12 6 7.1092 2.4547 2.3347 13 6 7.6059 3.7778 2.3796 14 1 6.9199 4.6114 2.4099 15 6 8.9862 4.0071 2.3848 16 7 9.8076 3.0633 2.0025 17 14 9.6563 5.6608 2.9378 18 1 9.2447 5.9175 4.3413 19 1 11.1387 5.6485 2.8505 20 1 9.1181 6.7313 2.0605 21 6 5.8244 2.1983 1.8240 22 6 4.0561 -1.4193 -0.0463 23 6 3.4865 -0.6775 -1.2593 24 7 2.0192 -0.6916 -1.1995 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6659 -1.7449 1.2573 29 1 1.6895 -0.1991 2.1402 30 1 3.5225 1.3678 0.9546 31 1 5.7684 -1.1604 2.2112 32 1 8.0140 -0.7194 3.1101 33 1 8.8857 1.5741 3.1940 34 1 10.7645 3.2220 2.0064 35 1 5.2112 3.0114 1.4645 36 1 5.1452 -1.3952 -0.0815 37 1 3.7137 -2.4541 -0.0590 38 1 3.8174 -1.1696 -2.1738 39 1 3.8403 0.3534 -1.2532 40 1 1.6646 -1.6352 -1.2428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692127818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = 9.304332 kcal Electronic energy + Delta-G solvation = -19422.508300 eV Core-core repulsion = 16621.694278 eV Total energy + Delta-G solvation = -2800.814021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.54549 -37.39593 -34.69695 -33.08891 -32.23159 -30.46679 -29.67384 -27.22717 -26.59914 -25.20571 -23.26934 -21.62513 -20.83129 -20.65939 -19.18273 -17.24600 -15.95358 -15.56446 -15.36290 -14.93208 -14.71224 -14.33827 -14.13579 -13.59666 -13.33169 -12.86712 -12.68034 -12.32367 -12.15933 -11.98797 -11.91706 -11.60757 -11.43192 -11.12321 -11.07697 -10.94447 -10.76626 -10.60277 -10.40838 -10.34550 -9.73603 -9.29930 -9.19977 -8.72909 -8.30148 -7.36682 -6.69208 -6.18584 -4.29103 2.88838 3.10216 3.13276 3.24785 3.39412 3.98125 4.18652 4.25451 4.72218 4.75756 4.91804 5.01728 5.18348 5.30452 5.43672 5.55153 5.62584 5.66194 5.83655 5.85080 5.98301 6.03594 6.08179 6.14994 6.28194 6.29879 6.36740 6.57555 7.05552 7.05821 7.09773 7.13729 7.36540 7.38948 7.42078 7.81350 7.93447 8.16246 8.27449 8.53502 8.65563 8.81159 9.02071 9.14362 10.26817 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.004414 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.876184 B = 6342.352032 C = 6669.101106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.080 0.920 4 C -0.159 4.159 5 C 0.162 3.838 6 H 0.073 0.927 7 N -0.754 5.754 8 C 0.226 3.774 9 C -0.302 4.302 10 C -0.075 4.075 11 C -0.200 4.200 12 C 0.142 3.858 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.792 5.792 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.290 4.290 22 C -0.172 4.172 23 C 0.061 3.939 24 N -0.681 5.681 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.385 0.615 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.279 0.721 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 -6.592 -2.855 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.198 4.198 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.387 5.387 8 C 0.128 3.872 9 C -0.325 4.325 10 C -0.095 4.095 11 C -0.220 4.220 12 C 0.139 3.861 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.417 5.417 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.314 4.314 22 C -0.213 4.213 23 C -0.068 4.068 24 N -0.310 5.310 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.219 0.781 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.543 -6.263 -3.295 13.540 hybrid contribution 0.534 0.238 0.793 0.985 sum -11.009 -6.025 -2.503 12.797 Atomic orbital electron populations 1.21802 0.94555 1.01738 1.02032 1.21531 0.94881 0.98578 0.87806 0.90158 1.22557 0.96051 1.01338 0.99884 1.20593 0.91861 0.85152 0.96905 0.90880 1.44524 1.16174 1.05672 1.72345 1.17458 0.83607 0.93658 0.92464 1.19857 0.97640 0.95549 1.19491 1.20435 0.94331 0.96105 0.98580 1.21162 1.01459 0.91629 1.07769 1.17325 0.89723 0.93141 0.85897 1.19516 0.91432 0.93171 1.45407 0.90726 1.25879 0.97180 0.98469 0.92404 1.69853 1.04560 1.34112 1.33202 0.86423 0.77793 0.82375 0.80403 1.18886 1.20408 1.19100 1.20388 1.00484 0.92909 1.17610 1.22738 1.02808 0.98584 0.97188 1.21952 0.86490 1.01696 0.96702 1.60771 1.09303 1.21835 1.39075 0.92227 0.91945 0.92943 0.91370 0.91023 0.78057 0.89733 0.89797 0.86854 0.91004 0.89460 0.90504 0.92441 0.91260 0.90374 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.47 37.16 0.35 -0.96 16 2 C 0.08 0.91 2.87 -67.72 -0.19 0.72 16 3 H 0.08 1.01 6.64 -51.93 -0.34 0.67 16 4 C -0.16 -1.83 5.02 -26.66 -0.13 -1.97 16 5 C 0.16 2.35 2.49 -67.81 -0.17 2.18 16 6 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 7 N -0.75 -13.23 4.51 -52.10 -0.24 -13.46 16 8 C 0.23 5.06 6.63 -83.86 -0.56 4.50 16 9 C -0.30 -6.87 8.87 -39.09 -0.35 -7.21 16 10 C -0.08 -1.83 10.02 -39.69 -0.40 -2.23 16 11 C -0.20 -5.36 8.69 -38.83 -0.34 -5.70 16 12 C 0.14 3.89 5.57 -106.85 -0.60 3.30 16 13 C -0.47 -12.67 9.05 -37.75 -0.34 -13.01 16 14 H 0.07 1.96 7.91 -52.48 -0.41 1.54 16 15 C 0.08 2.01 5.14 -17.35 -0.09 1.93 16 16 N -0.79 -20.96 10.96 55.55 0.61 -20.35 16 17 Si 0.91 19.03 29.60 -169.99 -5.03 14.00 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.29 -7.26 9.63 -38.67 -0.37 -7.63 16 22 C -0.17 -2.35 5.70 -26.58 -0.15 -2.50 16 23 C 0.06 0.79 6.41 -3.76 -0.02 0.77 16 24 N -0.68 -7.72 6.50 -106.68 -0.69 -8.42 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.39 6.41 7.02 -40.82 -0.29 6.12 16 31 H 0.08 1.74 6.14 -52.49 -0.32 1.42 16 32 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.11 3.14 6.16 -52.48 -0.32 2.82 16 34 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 36 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 40 H 0.33 3.30 8.79 -39.29 -0.35 2.96 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -27.67 314.43 -10.09 -37.75 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.12 Total: 13.55 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -3.36 Total: -27.81 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.32 Total: -42.23 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.67 -10.09 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.057 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds