Wall clock time and date at job start Mon Mar 30 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46091 * 2 1 4 4 C 1.53034 * 109.46371 * 119.98172 * 2 1 3 5 5 C 1.53110 * 109.27784 * 179.19389 * 4 2 1 6 6 H 1.09005 * 109.52026 * 182.37850 * 5 4 2 7 7 N 1.46495 * 109.52549 * 62.25086 * 5 4 2 8 8 C 1.39692 * 120.00372 * 155.12048 * 7 5 4 9 9 C 1.39332 * 119.94860 * 0.02562 * 8 7 5 10 10 C 1.38471 * 120.42662 * 179.97438 * 9 8 7 11 11 C 1.37692 * 120.32077 * 359.97438 * 10 9 8 12 12 C 1.40747 * 119.89764 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21053 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99699 * 204.45027 * 13 12 11 15 15 C 1.39923 * 119.99817 * 24.45616 * 13 12 11 16 16 N 1.30829 * 120.00552 * 17.87227 * 15 13 12 17 17 Si 1.86807 * 119.99725 * 197.87517 * 15 13 12 18 18 H 1.48494 * 109.47386 * 59.99759 * 17 15 13 19 19 H 1.48501 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46746 * 299.99604 * 17 15 13 21 21 C 1.38274 * 119.95033 * 179.97438 * 8 7 5 22 22 C 1.53122 * 109.21587 * 302.31217 * 5 4 2 23 23 C 1.53173 * 109.20387 * 57.62809 * 22 5 4 24 24 N 1.46849 * 109.45880 * 240.03504 * 2 1 3 25 25 H 1.09003 * 109.47071 * 300.02051 * 1 2 3 26 26 H 1.08997 * 109.47374 * 60.01519 * 1 2 3 27 27 H 1.08998 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.50179 * 59.25010 * 4 2 1 29 29 H 1.09002 * 109.53581 * 299.15755 * 4 2 1 30 30 H 0.96998 * 120.00091 * 335.13126 * 7 5 4 31 31 H 1.08002 * 119.78547 * 0.25067 * 9 8 7 32 32 H 1.07998 * 119.84371 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.04919 * 179.97438 * 11 10 9 34 34 H 0.97001 * 120.00613 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.16744 * 0.04756 * 21 8 7 36 36 H 1.08992 * 109.50201 * 177.62771 * 22 5 4 37 37 H 1.09003 * 109.49980 * 297.74884 * 22 5 4 38 38 H 1.09003 * 109.44457 * 180.83806 * 23 22 5 39 39 H 1.08990 * 109.44887 * 60.88423 * 23 22 5 40 40 H 1.00897 * 110.99781 * 302.33937 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2498 5 6 3.5709 -0.7362 1.2354 6 1 3.9379 -1.2857 2.1023 7 7 4.0746 0.6388 1.2781 8 6 5.3499 0.9001 1.7847 9 6 6.1422 -0.1478 2.2488 10 6 7.4080 0.0999 2.7525 11 6 7.8980 1.3858 2.7998 12 6 7.1092 2.4547 2.3347 13 6 7.6059 3.7778 2.3796 14 1 6.9199 4.6114 2.4099 15 6 8.9862 4.0071 2.3848 16 7 9.8076 3.0633 2.0025 17 14 9.6563 5.6608 2.9378 18 1 9.2447 5.9175 4.3413 19 1 11.1387 5.6485 2.8505 20 1 9.1181 6.7313 2.0605 21 6 5.8244 2.1983 1.8240 22 6 4.0561 -1.4193 -0.0463 23 6 3.4865 -0.6775 -1.2593 24 7 2.0192 -0.6916 -1.1995 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6659 -1.7449 1.2573 29 1 1.6895 -0.1991 2.1402 30 1 3.5225 1.3678 0.9546 31 1 5.7684 -1.1604 2.2112 32 1 8.0140 -0.7194 3.1101 33 1 8.8857 1.5741 3.1940 34 1 10.7645 3.2220 2.0064 35 1 5.2112 3.0114 1.4645 36 1 5.1452 -1.3952 -0.0815 37 1 3.7137 -2.4541 -0.0590 38 1 3.8174 -1.1696 -2.1738 39 1 3.8403 0.3534 -1.2532 40 1 1.6646 -1.6352 -1.2428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692127818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:33 Heat of formation + Delta-G solvation = -7.207192 kcal Electronic energy + Delta-G solvation = -19423.224293 eV Core-core repulsion = 16621.694278 eV Total energy + Delta-G solvation = -2801.530015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74154 -39.11405 -36.29950 -34.79823 -33.22317 -31.92389 -31.55253 -28.59156 -27.80252 -27.13695 -24.42516 -22.76200 -22.53007 -22.27761 -20.56954 -19.05830 -17.44050 -17.22533 -16.55248 -16.41739 -16.10501 -15.79914 -15.27145 -14.86342 -14.82484 -14.43321 -14.03638 -13.92307 -13.58045 -13.31937 -13.14133 -12.85243 -12.81226 -12.70656 -12.56846 -12.36532 -12.05956 -11.85743 -11.78703 -11.59186 -11.56390 -11.19029 -11.04878 -10.46060 -9.35753 -9.25482 -8.61339 -7.93311 -6.33132 1.05070 1.34428 1.38448 1.49771 1.60356 2.22115 2.76955 2.80209 3.31385 3.78933 3.83793 3.90761 3.99097 4.13933 4.36205 4.42694 4.48667 4.59810 4.68629 4.74582 4.85301 4.91083 4.95869 5.00004 5.11162 5.14860 5.16065 5.18322 5.23224 5.32798 5.36760 5.42297 5.59761 5.95204 6.01983 6.09678 6.19764 6.31224 6.56766 6.62757 6.89725 7.01570 7.04128 7.24231 8.36806 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.004414 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.876184 B = 6342.352032 C = 6669.101106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.061 0.939 4 C -0.148 4.148 5 C 0.155 3.845 6 H 0.065 0.935 7 N -0.743 5.743 8 C 0.238 3.762 9 C -0.302 4.302 10 C -0.076 4.076 11 C -0.233 4.233 12 C 0.114 3.886 13 C -0.505 4.505 14 H 0.071 0.929 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.314 4.314 22 C -0.166 4.166 23 C 0.067 3.933 24 N -0.678 5.678 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.390 0.610 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.287 0.713 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.377 -7.621 -3.082 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.187 4.187 5 C 0.049 3.951 6 H 0.083 0.917 7 N -0.375 5.375 8 C 0.137 3.863 9 C -0.325 4.325 10 C -0.095 4.095 11 C -0.254 4.254 12 C 0.111 3.889 13 C -0.534 4.534 14 H 0.089 0.911 15 C -0.178 4.178 16 N -0.449 5.449 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.338 4.338 22 C -0.206 4.206 23 C -0.063 4.063 24 N -0.308 5.308 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.225 0.775 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.244 -7.328 -3.542 15.545 hybrid contribution 0.925 0.422 0.802 1.295 sum -12.319 -6.906 -2.740 14.386 Atomic orbital electron populations 1.21744 0.92619 1.02817 1.02299 1.21528 0.96327 0.97442 0.87461 0.92120 1.22494 0.93271 1.02906 1.00064 1.20853 0.94143 0.83018 0.97081 0.91747 1.44604 1.14395 1.07595 1.70869 1.17502 0.85186 0.92624 0.90982 1.20131 0.97050 0.96816 1.18490 1.20725 0.95174 0.95775 0.97806 1.21086 1.01228 0.92858 1.10219 1.17684 0.90923 0.93715 0.86574 1.19781 0.92683 0.93281 1.47694 0.91074 1.26752 0.96810 1.02576 0.91661 1.69914 1.05144 1.36279 1.33584 0.85278 0.77528 0.77192 0.79812 1.18524 1.19029 1.18414 1.20498 1.00272 0.94279 1.18780 1.22669 1.01031 1.00119 0.96821 1.21821 0.87581 0.99970 0.96919 1.60724 1.08029 1.22850 1.39229 0.91585 0.92141 0.91424 0.88903 0.91032 0.77470 0.87143 0.87591 0.88675 0.90260 0.89529 0.93268 0.89720 0.90196 0.93186 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.47 71.98 0.68 -1.40 16 2 C 0.08 1.63 2.87 44.94 0.13 1.76 16 3 H 0.06 1.45 6.64 -2.39 -0.02 1.43 16 4 C -0.15 -2.96 5.02 30.64 0.15 -2.81 16 5 C 0.15 4.18 2.49 45.07 0.11 4.29 16 6 H 0.06 1.89 6.48 -2.38 -0.02 1.88 16 7 N -0.74 -25.56 4.51 -318.75 -1.44 -27.00 16 8 C 0.24 10.69 6.63 38.16 0.25 10.94 16 9 C -0.30 -13.55 8.87 22.59 0.20 -13.35 16 10 C -0.08 -3.71 10.02 22.20 0.22 -3.49 16 11 C -0.23 -12.99 8.69 22.75 0.20 -12.80 16 12 C 0.11 6.51 5.57 -21.31 -0.12 6.39 16 13 C -0.50 -28.67 9.05 23.46 0.21 -28.46 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.04 1.95 5.14 85.25 0.44 2.39 16 16 N -0.82 -44.94 10.96 21.82 0.24 -44.70 16 17 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.31 -16.25 9.63 22.86 0.22 -16.03 16 22 C -0.17 -4.16 5.70 30.69 0.17 -3.99 16 23 C 0.07 1.62 6.41 86.37 0.55 2.17 16 24 N -0.68 -13.57 6.50 -491.44 -3.20 -16.77 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.39 12.85 7.02 -92.71 -0.65 12.20 16 31 H 0.11 4.34 6.14 -2.91 -0.02 4.32 16 32 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 34 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 35 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.05 1.52 7.77 -2.39 -0.02 1.51 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.50 7.68 -2.39 -0.02 1.48 16 40 H 0.35 5.55 8.79 -89.70 -0.79 4.77 16 Total: -1.00 -62.00 314.43 0.67 -61.34 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.40 Total: 39.83 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 3.43 Total: -54.37 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -4.40 Total: -88.47 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -62.00 0.67 -61.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692127818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.131 kcal (2) G-P(sol) polarization free energy of solvation -62.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds