Wall clock time and date at job start Mon Mar 30 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46665 * 2 1 4 4 C 1.53049 * 109.45264 * 240.09398 * 2 1 3 5 5 C 1.53112 * 109.27712 * 180.87351 * 4 2 1 6 6 H 1.08996 * 109.52535 * 297.62371 * 5 4 2 7 7 N 1.46495 * 109.52489 * 177.49259 * 5 4 2 8 8 C 1.38857 * 120.00346 * 155.12685 * 7 5 4 9 9 C 1.39568 * 119.84559 * 180.02562 * 8 7 5 10 10 C 1.36341 * 120.16110 * 180.02562 * 9 8 7 11 11 C 1.40891 * 119.83470 * 359.97438 * 10 9 8 12 12 C 1.41139 * 120.15156 * 179.71874 * 11 10 9 13 13 H 1.08005 * 120.00135 * 334.76863 * 12 11 10 14 14 C 1.39867 * 119.99460 * 154.76055 * 12 11 10 15 15 N 1.30896 * 120.00256 * 342.81831 * 14 12 11 16 16 Si 1.86800 * 119.99726 * 162.81926 * 14 12 11 17 17 H 1.48500 * 109.47415 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46995 * 120.00003 * 16 14 12 19 19 H 1.48489 * 109.47205 * 239.99858 * 16 14 12 20 20 C 1.40883 * 119.69242 * 0.02562 * 11 10 9 21 21 C 1.36341 * 119.83486 * 359.97438 * 20 11 10 22 22 C 1.53118 * 109.21081 * 57.55917 * 5 4 2 23 23 C 1.53036 * 109.28137 * 302.37759 * 22 5 4 24 24 N 1.46841 * 109.46381 * 119.98513 * 2 1 3 25 25 H 1.09001 * 109.46882 * 300.02057 * 1 2 3 26 26 H 1.09001 * 109.47378 * 60.01735 * 1 2 3 27 27 H 1.08998 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.55853 * 60.89928 * 4 2 1 29 29 H 1.08999 * 109.45038 * 300.78304 * 4 2 1 30 30 H 0.97008 * 120.00030 * 335.13315 * 7 5 4 31 31 H 1.08000 * 119.91864 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.08207 * 180.02562 * 10 9 8 33 33 H 0.96998 * 120.00496 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.08312 * 179.97438 * 20 11 10 35 35 H 1.07999 * 119.91900 * 180.02562 * 21 20 11 36 36 H 1.09001 * 109.50783 * 62.31761 * 22 5 4 37 37 H 1.09010 * 109.50343 * 182.39728 * 22 5 4 38 38 H 1.09002 * 109.46777 * 179.19983 * 23 22 5 39 39 H 1.09005 * 109.45710 * 299.17809 * 23 22 5 40 40 H 1.00905 * 110.99790 * 305.83753 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7195 -1.2510 5 6 3.5706 -0.7363 -1.2360 6 1 3.9465 0.2863 -1.2681 7 7 4.0636 -1.4759 -2.4005 8 6 5.3318 -1.2155 -2.9025 9 6 5.7979 -1.9217 -4.0124 10 6 7.0423 -1.6716 -4.5103 11 6 7.8579 -0.6971 -3.9019 12 6 9.1494 -0.4370 -4.4081 13 1 9.6780 -1.2016 -4.9581 14 6 9.7446 0.8111 -4.1977 15 7 9.0105 1.8347 -3.8421 16 14 11.5874 1.0171 -4.4243 17 1 12.1850 -0.2816 -4.8262 18 1 11.8462 2.0284 -5.4804 19 1 12.1957 1.4683 -3.1471 20 6 7.3808 0.0118 -2.7818 21 6 6.1343 -0.2488 -2.2946 22 6 4.0544 -1.4193 0.0462 23 6 3.4864 -0.6782 1.2587 24 7 2.0192 -0.6919 1.1992 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6902 -0.1960 -2.1409 29 1 1.6645 -1.7429 -1.2592 30 1 3.5040 -2.1475 -2.8210 31 1 5.1717 -2.6687 -4.4775 32 1 7.4015 -2.2185 -5.3695 33 1 9.4232 2.7004 -3.6965 34 1 8.0008 0.7598 -2.3102 35 1 5.7670 0.2942 -1.4363 36 1 3.7120 -2.4540 0.0590 37 1 5.1437 -1.3960 0.0822 38 1 3.8175 -1.1705 2.1732 39 1 3.8403 0.3528 1.2527 40 1 1.6197 -0.2927 2.0353 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692144835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:37 Heat of formation + Delta-G solvation = 12.207473 kcal Electronic energy + Delta-G solvation = -19195.501365 eV Core-core repulsion = 16394.813233 eV Total energy + Delta-G solvation = -2800.688132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.18732 -37.58112 -34.95817 -33.09889 -32.25636 -30.50020 -29.43515 -28.03484 -26.96543 -24.38388 -23.05673 -21.62686 -21.06783 -19.91216 -19.40871 -17.18663 -16.45482 -16.09627 -15.17918 -15.02986 -14.89623 -13.97669 -13.82454 -13.72965 -13.50584 -12.70237 -12.54828 -12.32292 -12.15205 -11.96503 -11.86246 -11.69556 -11.49405 -11.13642 -11.02490 -10.98101 -10.78413 -10.61594 -10.33634 -10.23848 -9.66042 -9.25428 -9.17456 -8.54497 -8.49136 -7.46768 -6.61156 -6.34659 -4.01216 2.92310 3.12166 3.16690 3.22202 3.36966 4.07184 4.07606 4.25317 4.77597 4.81857 4.93571 5.06155 5.26685 5.30386 5.50475 5.51287 5.61503 5.70924 5.80076 5.84281 5.84933 5.99125 6.06248 6.20945 6.29392 6.30750 6.37698 6.56930 6.95627 6.98008 7.00326 7.22841 7.29985 7.38430 7.59289 7.71869 7.87160 8.17961 8.32480 8.53221 8.74305 8.83946 9.08745 9.18045 10.40361 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.004149 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.178642 B = 6747.761846 C = 7089.300945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.038 0.962 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.067 0.933 7 N -0.756 5.756 8 C 0.096 3.904 9 C -0.161 4.161 10 C -0.185 4.185 11 C 0.073 3.927 12 C -0.467 4.467 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.810 5.810 16 Si 0.902 3.098 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.275 1.275 20 C -0.123 4.123 21 C -0.165 4.165 22 C -0.132 4.132 23 C 0.060 3.940 24 N -0.686 5.686 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.383 0.617 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.275 0.725 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 -1.706 8.284 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.056 0.944 4 C -0.155 4.155 5 C 0.056 3.944 6 H 0.085 0.915 7 N -0.389 5.389 8 C -0.001 4.001 9 C -0.183 4.183 10 C -0.206 4.206 11 C 0.071 3.929 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.438 5.438 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.187 4.187 22 C -0.171 4.171 23 C -0.070 4.070 24 N -0.318 5.318 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.215 0.785 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.014 -1.940 8.146 14.645 hybrid contribution 0.826 0.938 -0.016 1.250 sum -11.188 -1.002 8.130 13.866 Atomic orbital electron populations 1.21813 0.94398 1.02482 1.01530 1.21417 0.94963 0.95279 0.90768 0.94406 1.21883 0.95571 1.01435 0.96640 1.20591 0.92157 0.95817 0.85797 0.91462 1.43925 1.15900 1.45492 1.33606 1.17364 0.86101 0.99562 0.97084 1.19813 0.97438 1.02545 0.98505 1.20553 0.94329 1.04408 1.01273 1.17491 0.92891 0.91558 0.91001 1.19398 1.00320 0.98164 1.31997 0.90956 1.25780 0.99629 0.95438 0.93170 1.69857 1.36576 1.00601 1.36736 0.86374 0.83435 0.79049 0.78448 1.18647 1.20307 1.20003 1.20930 0.94948 1.01742 0.96680 1.20108 0.96250 1.00584 1.01773 1.22125 1.00895 1.00188 0.93938 1.21910 0.87109 0.98803 0.99160 1.60359 1.07635 1.59330 1.04513 0.92908 0.92096 0.91800 0.91345 0.91119 0.78452 0.89632 0.89098 0.91454 0.86497 0.89447 0.91464 0.90991 0.90913 0.95226 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.43 37.16 0.35 -0.92 16 2 C 0.09 0.93 3.04 -67.72 -0.21 0.73 16 3 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -1.46 4.85 -26.65 -0.13 -1.59 16 5 C 0.16 2.50 2.20 -67.81 -0.15 2.35 16 6 H 0.07 1.16 6.45 -51.93 -0.34 0.82 16 7 N -0.76 -13.32 5.22 -51.92 -0.27 -13.59 16 8 C 0.10 2.11 6.65 -83.69 -0.56 1.55 16 9 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 10 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 11 C 0.07 2.01 5.57 -106.79 -0.59 1.42 16 12 C -0.47 -12.86 9.03 -37.87 -0.34 -13.21 16 13 H 0.07 1.93 7.90 -52.48 -0.41 1.51 16 14 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 15 N -0.81 -21.75 10.97 55.54 0.61 -21.14 16 16 Si 0.90 19.43 29.59 -169.99 -5.03 14.40 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C -0.12 -3.26 8.63 -39.26 -0.34 -3.60 16 21 C -0.17 -3.90 8.77 -39.77 -0.35 -4.25 16 22 C -0.13 -1.90 5.60 -26.65 -0.15 -2.05 16 23 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 24 N -0.69 -7.40 6.50 -106.76 -0.69 -8.09 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.38 6.11 8.60 -40.82 -0.35 5.76 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 34 H 0.12 3.22 6.19 -52.49 -0.32 2.89 16 35 H 0.09 1.90 6.02 -52.49 -0.32 1.58 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.17 7.66 -51.92 -0.40 0.77 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.34 2.99 8.79 -39.29 -0.35 2.65 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -28.24 317.95 -10.22 -38.46 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.27 Total: 11.29 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.35 Total: -26.12 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.36 Total: -42.83 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.24 -10.22 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692144835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.663 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds