Wall clock time and date at job start Mon Mar 30 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46665 * 2 1 4 4 C 1.53049 * 109.45264 * 240.09398 * 2 1 3 5 5 C 1.53112 * 109.27712 * 180.87351 * 4 2 1 6 6 H 1.08996 * 109.52535 * 297.62371 * 5 4 2 7 7 N 1.46495 * 109.52489 * 177.49259 * 5 4 2 8 8 C 1.38857 * 120.00346 * 155.12685 * 7 5 4 9 9 C 1.39568 * 119.84559 * 180.02562 * 8 7 5 10 10 C 1.36341 * 120.16110 * 180.02562 * 9 8 7 11 11 C 1.40891 * 119.83470 * 359.97438 * 10 9 8 12 12 C 1.41139 * 120.15156 * 179.71874 * 11 10 9 13 13 H 1.08005 * 120.00135 * 334.76863 * 12 11 10 14 14 C 1.39867 * 119.99460 * 154.76055 * 12 11 10 15 15 N 1.30896 * 120.00256 * 342.81831 * 14 12 11 16 16 Si 1.86800 * 119.99726 * 162.81926 * 14 12 11 17 17 H 1.48500 * 109.47415 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46995 * 120.00003 * 16 14 12 19 19 H 1.48489 * 109.47205 * 239.99858 * 16 14 12 20 20 C 1.40883 * 119.69242 * 0.02562 * 11 10 9 21 21 C 1.36341 * 119.83486 * 359.97438 * 20 11 10 22 22 C 1.53118 * 109.21081 * 57.55917 * 5 4 2 23 23 C 1.53036 * 109.28137 * 302.37759 * 22 5 4 24 24 N 1.46841 * 109.46381 * 119.98513 * 2 1 3 25 25 H 1.09001 * 109.46882 * 300.02057 * 1 2 3 26 26 H 1.09001 * 109.47378 * 60.01735 * 1 2 3 27 27 H 1.08998 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.55853 * 60.89928 * 4 2 1 29 29 H 1.08999 * 109.45038 * 300.78304 * 4 2 1 30 30 H 0.97008 * 120.00030 * 335.13315 * 7 5 4 31 31 H 1.08000 * 119.91864 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.08207 * 180.02562 * 10 9 8 33 33 H 0.96998 * 120.00496 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.08312 * 179.97438 * 20 11 10 35 35 H 1.07999 * 119.91900 * 180.02562 * 21 20 11 36 36 H 1.09001 * 109.50783 * 62.31761 * 22 5 4 37 37 H 1.09010 * 109.50343 * 182.39728 * 22 5 4 38 38 H 1.09002 * 109.46777 * 179.19983 * 23 22 5 39 39 H 1.09005 * 109.45710 * 299.17809 * 23 22 5 40 40 H 1.00905 * 110.99790 * 305.83753 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7195 -1.2510 5 6 3.5706 -0.7363 -1.2360 6 1 3.9465 0.2863 -1.2681 7 7 4.0636 -1.4759 -2.4005 8 6 5.3318 -1.2155 -2.9025 9 6 5.7979 -1.9217 -4.0124 10 6 7.0423 -1.6716 -4.5103 11 6 7.8579 -0.6971 -3.9019 12 6 9.1494 -0.4370 -4.4081 13 1 9.6780 -1.2016 -4.9581 14 6 9.7446 0.8111 -4.1977 15 7 9.0105 1.8347 -3.8421 16 14 11.5874 1.0171 -4.4243 17 1 12.1850 -0.2816 -4.8262 18 1 11.8462 2.0284 -5.4804 19 1 12.1957 1.4683 -3.1471 20 6 7.3808 0.0118 -2.7818 21 6 6.1343 -0.2488 -2.2946 22 6 4.0544 -1.4193 0.0462 23 6 3.4864 -0.6782 1.2587 24 7 2.0192 -0.6919 1.1992 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6902 -0.1960 -2.1409 29 1 1.6645 -1.7429 -1.2592 30 1 3.5040 -2.1475 -2.8210 31 1 5.1717 -2.6687 -4.4775 32 1 7.4015 -2.2185 -5.3695 33 1 9.4232 2.7004 -3.6965 34 1 8.0008 0.7598 -2.3102 35 1 5.7670 0.2942 -1.4363 36 1 3.7120 -2.4540 0.0590 37 1 5.1437 -1.3960 0.0822 38 1 3.8175 -1.1705 2.1732 39 1 3.8403 0.3528 1.2527 40 1 1.6197 -0.2927 2.0353 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692144835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:37 Heat of formation + Delta-G solvation = -4.962042 kcal Electronic energy + Delta-G solvation = -19196.245891 eV Core-core repulsion = 16394.813233 eV Total energy + Delta-G solvation = -2801.432658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45231 -39.20711 -36.52961 -34.85233 -33.21263 -31.99092 -31.35189 -29.73073 -27.90743 -26.17897 -24.33037 -22.92734 -22.74754 -21.44315 -20.66458 -19.15901 -17.84717 -17.35945 -16.81058 -16.48958 -16.01418 -15.62900 -15.08884 -14.92013 -14.77504 -14.37054 -14.20064 -13.82691 -13.61817 -13.32633 -13.19133 -12.89376 -12.77544 -12.73462 -12.60542 -12.35423 -12.13140 -11.94731 -11.71453 -11.55581 -11.37851 -11.14592 -11.02207 -10.27943 -9.41046 -9.40895 -8.54675 -8.15350 -6.01482 1.09825 1.17884 1.39738 1.54174 1.57533 2.27389 2.83230 2.85245 3.21621 3.80335 3.83196 3.97721 4.04062 4.19329 4.39357 4.40985 4.49946 4.52195 4.57388 4.58491 4.81263 4.88337 4.95384 5.01196 5.05158 5.12740 5.15096 5.21570 5.27723 5.33347 5.41352 5.45542 5.69562 5.81205 5.96083 6.07458 6.18766 6.39069 6.52988 6.67485 6.87563 7.08424 7.15078 7.32737 8.48855 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035337 B = 0.004149 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.178642 B = 6747.761846 C = 7089.300945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.032 0.968 4 C -0.109 4.109 5 C 0.159 3.841 6 H 0.047 0.953 7 N -0.745 5.745 8 C 0.116 3.884 9 C -0.167 4.167 10 C -0.194 4.194 11 C 0.035 3.965 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.032 3.968 15 N -0.844 5.844 16 Si 0.977 3.023 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.267 1.267 20 C -0.142 4.142 21 C -0.173 4.173 22 C -0.126 4.126 23 C 0.065 3.935 24 N -0.685 5.685 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.396 0.604 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.281 0.719 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 -2.134 9.069 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 H 0.050 0.950 4 C -0.147 4.147 5 C 0.053 3.947 6 H 0.065 0.935 7 N -0.379 5.379 8 C 0.016 3.984 9 C -0.189 4.189 10 C -0.214 4.214 11 C 0.032 3.968 12 C -0.538 4.538 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.473 5.473 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.193 1.193 19 H -0.191 1.191 20 C -0.162 4.162 21 C -0.196 4.196 22 C -0.166 4.166 23 C -0.065 4.065 24 N -0.318 5.318 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.230 0.770 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.699 -2.382 8.954 16.538 hybrid contribution 1.141 1.010 -0.211 1.539 sum -12.558 -1.372 8.744 15.363 Atomic orbital electron populations 1.21759 0.92395 1.02826 1.02596 1.21437 0.96479 0.94576 0.89976 0.94999 1.21824 0.92908 1.02140 0.97852 1.20756 0.94283 0.94423 0.85207 0.93453 1.43987 1.14314 1.45576 1.33998 1.17456 0.87237 0.97704 0.95963 1.20113 0.97016 1.03145 0.98668 1.20766 0.95180 1.03986 1.01509 1.17809 0.93819 0.93139 0.92025 1.19621 1.01320 0.99052 1.33790 0.91452 1.26606 1.04322 0.94580 0.92473 1.69920 1.38574 1.01164 1.37607 0.85246 0.77147 0.79037 0.78736 1.18422 1.19336 1.19144 1.20848 0.96075 1.02098 0.97210 1.20218 0.95659 1.01324 1.02355 1.22010 0.99476 1.00425 0.94653 1.21821 0.87964 0.98308 0.98420 1.60328 1.06708 1.59535 1.05254 0.91493 0.91491 0.91761 0.91082 0.90515 0.76986 0.86431 0.88500 0.90825 0.88491 0.88158 0.91475 0.93386 0.89462 0.95624 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.43 71.98 0.68 -1.31 16 2 C 0.09 1.64 3.04 44.94 0.14 1.78 16 3 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.11 -2.46 4.85 30.65 0.15 -2.31 16 5 C 0.16 4.66 2.20 45.07 0.10 4.76 16 6 H 0.05 1.60 6.45 -2.39 -0.02 1.58 16 7 N -0.75 -25.01 5.22 -318.18 -1.66 -26.68 16 8 C 0.12 5.01 6.65 38.67 0.26 5.26 16 9 C -0.17 -7.46 9.82 22.15 0.22 -7.24 16 10 C -0.19 -9.90 9.74 22.48 0.22 -9.68 16 11 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 12 C -0.51 -28.96 9.03 23.38 0.21 -28.75 16 13 H 0.07 3.74 7.90 -2.91 -0.02 3.72 16 14 C 0.03 1.70 5.14 85.23 0.44 2.13 16 15 N -0.84 -46.84 10.97 21.82 0.24 -46.60 16 16 Si 0.98 40.69 29.59 68.60 2.03 42.72 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 20 C -0.14 -7.83 8.63 22.47 0.19 -7.64 16 21 C -0.17 -8.32 8.77 22.15 0.19 -8.12 16 22 C -0.13 -3.48 5.60 30.65 0.17 -3.31 16 23 C 0.06 1.42 6.55 86.33 0.57 1.99 16 24 N -0.68 -12.90 6.50 -491.68 -3.20 -16.10 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 30 H 0.40 11.57 8.60 -92.70 -0.80 10.77 16 31 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 34 H 0.10 5.63 6.19 -2.91 -0.02 5.62 16 35 H 0.10 4.44 6.02 -2.91 -0.02 4.43 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.55 7.66 -2.38 -0.02 1.53 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.35 5.14 8.79 -89.69 -0.79 4.36 16 Total: -1.00 -62.39 317.95 0.28 -62.12 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.55 Total: 35.12 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 3.41 Total: -50.59 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -4.62 Total: -89.38 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -62.39 0.28 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692144835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.157 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds