Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.45875 * 2 1 4 4 C 1.53037 * 109.46248 * 119.97791 * 2 1 3 5 5 C 1.53124 * 109.27879 * 179.19453 * 4 2 1 6 6 H 1.08996 * 109.52027 * 62.24611 * 5 4 2 7 7 N 1.46501 * 109.52239 * 182.43578 * 5 4 2 8 8 C 1.38850 * 120.00184 * 204.99703 * 7 5 4 9 9 C 1.39566 * 119.83964 * 359.72588 * 8 7 5 10 10 C 1.36340 * 120.15922 * 179.71932 * 9 8 7 11 11 C 1.40888 * 119.83784 * 0.55401 * 10 9 8 12 12 C 1.41133 * 120.15874 * 179.70029 * 11 10 9 13 13 H 1.07994 * 120.00150 * 204.62978 * 12 11 10 14 14 C 1.39873 * 119.99735 * 24.63061 * 12 11 10 15 15 N 1.30905 * 120.00212 * 17.95751 * 14 12 11 16 16 Si 1.86806 * 119.99749 * 197.95628 * 14 12 11 17 17 H 1.48497 * 109.47066 * 90.00158 * 16 14 12 18 18 H 1.48500 * 109.46838 * 210.00111 * 16 14 12 19 19 H 1.48504 * 109.46912 * 330.00148 * 16 14 12 20 20 C 1.40883 * 119.68848 * 359.72404 * 11 10 9 21 21 C 1.36347 * 119.83369 * 359.97438 * 20 11 10 22 22 C 1.53122 * 109.15767 * 302.34017 * 5 4 2 23 23 C 1.53040 * 109.27764 * 57.65654 * 22 5 4 24 24 N 1.46851 * 109.52278 * 300.81805 * 23 22 5 25 25 H 1.09001 * 109.46977 * 300.02722 * 1 2 3 26 26 H 1.08993 * 109.46967 * 60.02233 * 1 2 3 27 27 H 1.08999 * 109.47518 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.50097 * 299.12807 * 4 2 1 29 29 H 1.09003 * 109.50830 * 59.24842 * 4 2 1 30 30 H 0.97008 * 119.99853 * 25.00093 * 7 5 4 31 31 H 1.08001 * 119.92000 * 359.97438 * 9 8 7 32 32 H 1.08007 * 120.08370 * 180.28275 * 10 9 8 33 33 H 0.97000 * 119.99780 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.08506 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.91490 * 180.02562 * 21 20 11 36 36 H 1.09001 * 109.49979 * 177.59529 * 22 5 4 37 37 H 1.08999 * 109.50519 * 297.67596 * 22 5 4 38 38 H 1.08998 * 109.46144 * 60.83175 * 23 22 5 39 39 H 1.08994 * 109.46104 * 180.80704 * 23 22 5 40 40 H 1.00904 * 110.99960 * 297.64719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7362 1.2355 6 1 3.9457 0.2869 1.2671 7 7 4.0642 -1.4757 2.4000 8 6 5.3309 -1.2124 2.9042 9 6 6.1336 -0.2465 2.2956 10 6 7.3762 0.0213 2.7887 11 6 7.8538 -0.6879 3.9084 12 6 9.1415 -0.4206 4.4206 13 1 9.6670 -1.1783 4.9828 14 6 9.7369 0.8257 4.2002 15 7 9.0019 1.8482 3.8425 16 14 11.5810 1.0310 4.4162 17 1 12.2642 0.7544 3.1271 18 1 11.8773 2.4216 4.8451 19 1 12.0674 0.0804 5.4483 20 6 7.0402 -1.6657 4.5141 21 6 5.7973 -1.9187 4.0139 22 6 4.0548 -1.4190 -0.0468 23 6 3.4864 -0.6778 -1.2592 24 7 2.0192 -0.6918 -1.1994 25 1 -0.3633 0.5143 0.8898 26 1 -0.3633 0.5135 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.6896 -0.1982 2.1399 29 1 1.6659 -1.7448 1.2576 30 1 3.5059 -2.1494 2.8188 31 1 5.7680 0.2930 1.4343 32 1 7.9946 0.7723 2.3195 33 1 9.4149 2.7126 3.6900 34 1 7.4001 -2.2135 5.3725 35 1 5.1723 -2.6676 4.4775 36 1 5.1439 -1.3949 -0.0832 37 1 3.7130 -2.4539 -0.0592 38 1 3.8403 0.3531 -1.2532 39 1 3.8173 -1.1700 -2.1736 40 1 1.6646 -1.6355 -1.2426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692144837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -6.684743 kcal Electronic energy + Delta-G solvation = -19216.197342 eV Core-core repulsion = 16414.689983 eV Total energy + Delta-G solvation = -2801.507360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57819 -39.28787 -36.51997 -34.82634 -33.24333 -31.81513 -31.36592 -29.62435 -27.92910 -26.16632 -24.26165 -22.97447 -22.68962 -21.64101 -21.10401 -19.17430 -17.95485 -16.89430 -16.78553 -16.18914 -16.06348 -15.66756 -15.26590 -14.91878 -14.77712 -14.40809 -14.11095 -13.85268 -13.55495 -13.39625 -13.28457 -12.91890 -12.76672 -12.63404 -12.54424 -12.49884 -12.29661 -11.86549 -11.73844 -11.58199 -11.50686 -11.17543 -11.03141 -10.31205 -9.43236 -9.35985 -8.56632 -8.18059 -6.02617 1.08775 1.16506 1.39134 1.51841 1.57779 2.26316 2.79505 2.83001 3.33803 3.74450 3.80622 3.94798 4.06273 4.20654 4.31548 4.39959 4.45337 4.47370 4.57112 4.64466 4.82195 4.89737 4.96441 5.00374 5.04072 5.10898 5.12419 5.24767 5.25720 5.32778 5.37085 5.43939 5.67663 5.79172 5.94416 6.08423 6.17070 6.37237 6.51628 6.65686 6.85741 7.06801 7.13116 7.30139 8.46865 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035409 B = 0.004154 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.568046 B = 6739.293962 C = 7074.868533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.070 0.930 4 C -0.145 4.145 5 C 0.160 3.840 6 H 0.049 0.951 7 N -0.746 5.746 8 C 0.113 3.887 9 C -0.172 4.172 10 C -0.144 4.144 11 C 0.036 3.964 12 C -0.507 4.507 13 H 0.068 0.932 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.977 3.023 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.260 1.260 20 C -0.196 4.196 21 C -0.167 4.167 22 C -0.163 4.163 23 C 0.065 3.935 24 N -0.678 5.678 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.395 0.605 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.282 0.718 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 -3.713 -8.211 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.088 0.912 4 C -0.185 4.185 5 C 0.054 3.946 6 H 0.067 0.933 7 N -0.380 5.380 8 C 0.014 3.986 9 C -0.194 4.194 10 C -0.164 4.164 11 C 0.033 3.967 12 C -0.539 4.539 13 H 0.086 0.914 14 C -0.180 4.180 15 N -0.470 5.470 16 Si 0.799 3.201 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.184 1.184 20 C -0.216 4.216 21 C -0.189 4.189 22 C -0.204 4.204 23 C -0.065 4.065 24 N -0.308 5.308 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.229 0.771 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.612 -2.779 -8.805 16.448 hybrid contribution 1.256 -0.568 1.236 1.851 sum -12.356 -3.347 -7.569 14.872 Atomic orbital electron populations 1.21735 0.92515 1.02676 1.02512 1.21546 0.96459 0.97712 0.86691 0.91160 1.22502 0.93280 1.02281 1.00441 1.20742 0.94131 0.94635 0.85118 0.93276 1.44009 1.14462 1.45387 1.34100 1.17442 0.87330 0.97830 0.95998 1.20226 0.95708 1.01286 1.02223 1.20865 0.96188 1.02089 0.97249 1.17810 0.93789 0.93079 0.92036 1.19608 1.01634 0.99395 1.33213 0.91415 1.26617 1.04374 0.94527 0.92434 1.69922 1.38650 1.01260 1.37180 0.85286 0.77105 0.78250 0.79495 1.18947 1.19483 1.18438 1.20755 0.95256 1.04050 1.01573 1.20106 0.97027 1.03095 0.98687 1.22705 1.00876 1.00396 0.96420 1.21936 0.87543 1.00347 0.96708 1.60749 1.08163 1.22827 1.39057 0.91550 0.91649 0.91859 0.91222 0.90548 0.77104 0.88097 0.88424 0.90754 0.88541 0.86516 0.93474 0.91531 0.91772 0.89447 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.47 71.98 0.68 -1.26 16 2 C 0.09 1.60 3.03 44.94 0.14 1.74 16 3 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.15 -3.01 4.83 30.65 0.15 -2.86 16 5 C 0.16 4.46 2.20 45.07 0.10 4.56 16 6 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 7 N -0.75 -24.39 5.22 -318.16 -1.66 -26.05 16 8 C 0.11 4.86 6.65 38.67 0.26 5.11 16 9 C -0.17 -8.22 8.78 22.15 0.19 -8.03 16 10 C -0.14 -7.90 8.64 22.48 0.19 -7.71 16 11 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 12 C -0.51 -28.94 9.03 23.38 0.21 -28.72 16 13 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 14 C 0.03 1.73 5.13 85.23 0.44 2.17 16 15 N -0.84 -46.61 10.96 21.82 0.24 -46.37 16 16 Si 0.98 40.57 29.60 68.60 2.03 42.60 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 20 C -0.20 -9.97 9.74 22.48 0.22 -9.75 16 21 C -0.17 -7.41 9.82 22.15 0.22 -7.19 16 22 C -0.16 -4.18 5.59 30.65 0.17 -4.01 16 23 C 0.07 1.38 6.55 86.33 0.57 1.94 16 24 N -0.68 -12.51 6.50 -491.68 -3.20 -15.70 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.39 11.16 8.60 -92.70 -0.80 10.36 16 31 H 0.10 4.44 6.02 -2.91 -0.02 4.43 16 32 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 33 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 34 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 35 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.05 1.47 7.66 -2.39 -0.02 1.45 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.35 5.45 8.79 -89.69 -0.79 4.66 16 Total: -1.00 -61.80 317.93 0.28 -61.52 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.55 Total: 36.10 kcal Atomic # 6 Polarization: -55.52 SS G_CDS: 3.41 Total: -52.11 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -4.62 Total: -88.12 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -61.80 0.28 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692144837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.839 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds