Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45299 * 2 1 4 4 C 1.53034 * 109.46034 * 240.02466 * 2 1 3 5 5 C 1.53122 * 109.27653 * 180.80794 * 4 2 1 6 6 H 1.09001 * 109.52405 * 177.62425 * 5 4 2 7 7 N 1.46498 * 109.52319 * 297.75009 * 5 4 2 8 8 C 1.38859 * 120.00359 * 205.00486 * 7 5 4 9 9 C 1.39570 * 119.83842 * 359.72074 * 8 7 5 10 10 C 1.36342 * 120.16005 * 179.72264 * 9 8 7 11 11 C 1.40891 * 119.83387 * 0.55311 * 10 9 8 12 12 C 1.41138 * 120.15308 * 179.69911 * 11 10 9 13 13 H 1.07995 * 119.99569 * 155.10958 * 12 11 10 14 14 C 1.39864 * 120.00113 * 335.11301 * 12 11 10 15 15 N 1.30900 * 120.00029 * 342.12902 * 14 12 11 16 16 Si 1.86796 * 120.00151 * 162.13018 * 14 12 11 17 17 H 1.48503 * 109.47336 * 94.64759 * 16 14 12 18 18 H 1.48497 * 109.47121 * 214.65347 * 16 14 12 19 19 H 1.48502 * 109.47069 * 334.65279 * 16 14 12 20 20 C 1.40882 * 119.69030 * 359.72117 * 11 10 9 21 21 C 1.36344 * 119.83534 * 359.97438 * 20 11 10 22 22 C 1.53114 * 109.16441 * 57.65577 * 5 4 2 23 23 C 1.53040 * 109.27558 * 302.34767 * 22 5 4 24 24 N 1.46843 * 109.52455 * 59.17748 * 23 22 5 25 25 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46843 * 299.97912 * 1 2 3 27 27 H 1.08997 * 109.46722 * 59.97033 * 1 2 3 28 28 H 1.09001 * 109.50566 * 300.74108 * 4 2 1 29 29 H 1.09000 * 109.50637 * 60.83100 * 4 2 1 30 30 H 0.97002 * 120.00378 * 24.99947 * 7 5 4 31 31 H 1.08004 * 119.92113 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.08405 * 180.27799 * 10 9 8 33 33 H 0.96997 * 120.00186 * 180.02562 * 15 14 12 34 34 H 1.07995 * 120.08563 * 179.97438 * 20 11 10 35 35 H 1.07997 * 119.91427 * 179.97438 * 21 20 11 36 36 H 1.08998 * 109.50567 * 62.28263 * 22 5 4 37 37 H 1.09001 * 109.50548 * 182.36612 * 22 5 4 38 38 H 1.09001 * 109.46320 * 179.19463 * 23 22 5 39 39 H 1.09002 * 109.46071 * 299.15713 * 23 22 5 40 40 H 1.00906 * 110.99784 * 174.16311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 1 3.9379 -1.2854 -2.1025 7 7 4.0746 0.6389 -1.2780 8 6 5.3413 0.8990 -1.7840 9 6 6.1341 -0.1527 -2.2459 10 6 7.3765 0.0959 -2.7493 11 6 7.8641 1.4170 -2.7918 12 6 9.1518 1.6813 -3.3056 13 1 9.3815 2.6550 -3.7123 14 6 10.1303 0.6821 -3.2882 15 7 9.9910 -0.3569 -2.5043 16 14 11.6361 0.8303 -4.3836 17 1 12.7475 1.4480 -3.6165 18 1 12.0453 -0.5196 -4.8478 19 1 11.3126 1.6804 -5.5575 20 6 7.0606 2.4730 -2.3184 21 6 5.8176 2.2102 -1.8235 22 6 4.0548 -1.4189 0.0467 23 6 3.4864 -0.6777 1.2591 24 7 2.0193 -0.6918 1.1994 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8897 28 1 1.6659 -1.7448 -1.2575 29 1 1.6889 -0.1986 -2.1399 30 1 3.5233 1.3677 -0.9527 31 1 5.7608 -1.1655 -2.2083 32 1 7.9871 -0.7183 -3.1105 33 1 10.6698 -1.0497 -2.4919 34 1 7.4281 3.4880 -2.3476 35 1 5.2007 3.0187 -1.4599 36 1 3.7124 -2.4536 0.0595 37 1 5.1439 -1.3954 0.0828 38 1 3.8174 -1.1699 2.1736 39 1 3.8404 0.3532 1.2532 40 1 1.6195 -0.2925 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692144839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = 14.934924 kcal Electronic energy + Delta-G solvation = -19411.844953 eV Core-core repulsion = 16611.275092 eV Total energy + Delta-G solvation = -2800.569861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.37272 -37.48329 -34.72387 -33.05703 -32.16124 -30.57987 -29.43542 -28.02560 -26.94395 -24.29057 -23.37210 -21.69860 -20.89492 -20.46763 -18.53948 -17.19397 -16.43692 -16.20617 -15.11875 -14.98648 -14.81847 -14.18049 -13.88892 -13.64182 -13.11864 -12.85340 -12.58509 -12.32326 -12.10289 -11.92980 -11.81405 -11.64198 -11.59103 -11.24565 -10.99439 -10.95087 -10.77162 -10.56436 -10.34179 -10.10495 -9.67808 -9.25829 -9.19611 -8.55325 -8.35848 -7.47103 -6.62202 -6.35498 -4.01040 2.93082 3.11788 3.15996 3.21051 3.37147 4.07024 4.13109 4.37364 4.77114 4.81878 4.85825 5.12934 5.30476 5.39602 5.44695 5.58083 5.67881 5.75026 5.83798 5.85497 5.98835 6.07549 6.13089 6.25237 6.28191 6.31732 6.39213 6.45597 6.95595 6.98399 7.08120 7.22382 7.36461 7.38008 7.58995 7.71167 7.86570 8.17393 8.32155 8.52913 8.72797 8.82738 9.08236 9.17666 10.39444 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044318 B = 0.004214 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.650339 B = 6642.903854 C = 6884.530857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.073 0.927 7 N -0.754 5.754 8 C 0.095 3.905 9 C -0.164 4.164 10 C -0.124 4.124 11 C 0.074 3.926 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.808 5.808 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.187 4.187 21 C -0.161 4.161 22 C -0.133 4.133 23 C 0.064 3.936 24 N -0.686 5.686 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.380 0.620 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.275 0.725 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 -1.926 4.551 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.155 4.155 5 C 0.054 3.946 6 H 0.091 0.909 7 N -0.390 5.390 8 C -0.002 4.002 9 C -0.186 4.186 10 C -0.143 4.143 11 C 0.071 3.929 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.436 5.436 16 Si 0.726 3.274 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.207 4.207 21 C -0.184 4.184 22 C -0.172 4.172 23 C -0.065 4.065 24 N -0.318 5.318 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.213 0.787 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.223 -2.946 4.284 14.209 hybrid contribution 0.801 1.218 0.052 1.458 sum -12.423 -1.728 4.336 13.271 Atomic orbital electron populations 1.21828 0.94665 1.02382 1.01426 1.21418 0.94657 0.95305 0.91193 0.94607 1.21896 0.95510 1.01472 0.96650 1.20611 0.92084 0.84966 0.96973 0.90891 1.44016 1.16122 1.05473 1.73360 1.17352 0.86115 0.93306 1.03379 1.20116 0.96106 0.95614 1.06737 1.20935 0.93704 0.97816 1.01890 1.17483 0.92819 0.91078 0.91502 1.19357 0.95495 0.98577 1.36511 0.91028 1.25777 0.99478 0.94623 0.94094 1.69854 1.34142 1.09172 1.30393 0.86427 0.81304 0.78398 0.81256 1.19891 1.20290 1.18695 1.20532 0.95579 0.97985 1.06598 1.19789 0.97451 0.93283 1.07836 1.22068 1.01128 0.99016 0.95007 1.21808 0.86681 0.99374 0.98655 1.60388 1.07895 1.59142 1.04380 0.91844 0.93029 0.92212 0.90558 0.91365 0.78738 0.89282 0.86486 0.91380 0.89190 0.89884 0.91588 0.90834 0.91449 0.94682 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.43 37.16 0.35 -0.96 16 2 C 0.08 0.93 2.88 -67.72 -0.19 0.74 16 3 H 0.04 0.43 6.64 -51.93 -0.34 0.09 16 4 C -0.12 -1.43 5.04 -26.65 -0.13 -1.56 16 5 C 0.16 2.41 2.48 -67.81 -0.17 2.24 16 6 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16 7 N -0.75 -12.97 4.48 -51.92 -0.23 -13.20 16 8 C 0.10 2.07 6.65 -83.69 -0.56 1.51 16 9 C -0.16 -3.82 8.76 -39.77 -0.35 -4.17 16 10 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 11 C 0.07 2.02 5.57 -106.79 -0.59 1.42 16 12 C -0.47 -12.85 9.03 -37.87 -0.34 -13.19 16 13 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 14 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 15 N -0.81 -21.61 10.98 55.54 0.61 -21.00 16 16 Si 0.90 19.37 29.59 -169.99 -5.03 14.34 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.19 -4.67 9.74 -39.26 -0.38 -5.06 16 21 C -0.16 -3.65 9.82 -39.77 -0.39 -4.04 16 22 C -0.13 -1.94 5.69 -26.65 -0.15 -2.09 16 23 C 0.06 0.84 6.40 -3.83 -0.02 0.81 16 24 N -0.69 -7.79 6.50 -106.76 -0.69 -8.49 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.38 6.05 7.01 -40.82 -0.29 5.77 16 31 H 0.09 1.91 6.10 -52.48 -0.32 1.59 16 32 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 33 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.25 7.74 -51.93 -0.40 0.85 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 40 H 0.34 3.27 8.79 -39.29 -0.35 2.93 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -27.74 314.05 -10.09 -37.83 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.11 Total: 11.85 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -3.37 Total: -26.06 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.32 Total: -42.69 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.74 -10.09 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692144839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.764 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds