Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45299 * 2 1 4 4 C 1.53034 * 109.46034 * 240.02466 * 2 1 3 5 5 C 1.53122 * 109.27653 * 180.80794 * 4 2 1 6 6 H 1.09001 * 109.52405 * 177.62425 * 5 4 2 7 7 N 1.46498 * 109.52319 * 297.75009 * 5 4 2 8 8 C 1.38859 * 120.00359 * 205.00486 * 7 5 4 9 9 C 1.39570 * 119.83842 * 359.72074 * 8 7 5 10 10 C 1.36342 * 120.16005 * 179.72264 * 9 8 7 11 11 C 1.40891 * 119.83387 * 0.55311 * 10 9 8 12 12 C 1.41138 * 120.15308 * 179.69911 * 11 10 9 13 13 H 1.07995 * 119.99569 * 155.10958 * 12 11 10 14 14 C 1.39864 * 120.00113 * 335.11301 * 12 11 10 15 15 N 1.30900 * 120.00029 * 342.12902 * 14 12 11 16 16 Si 1.86796 * 120.00151 * 162.13018 * 14 12 11 17 17 H 1.48503 * 109.47336 * 94.64759 * 16 14 12 18 18 H 1.48497 * 109.47121 * 214.65347 * 16 14 12 19 19 H 1.48502 * 109.47069 * 334.65279 * 16 14 12 20 20 C 1.40882 * 119.69030 * 359.72117 * 11 10 9 21 21 C 1.36344 * 119.83534 * 359.97438 * 20 11 10 22 22 C 1.53114 * 109.16441 * 57.65577 * 5 4 2 23 23 C 1.53040 * 109.27558 * 302.34767 * 22 5 4 24 24 N 1.46843 * 109.52455 * 59.17748 * 23 22 5 25 25 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46843 * 299.97912 * 1 2 3 27 27 H 1.08997 * 109.46722 * 59.97033 * 1 2 3 28 28 H 1.09001 * 109.50566 * 300.74108 * 4 2 1 29 29 H 1.09000 * 109.50637 * 60.83100 * 4 2 1 30 30 H 0.97002 * 120.00378 * 24.99947 * 7 5 4 31 31 H 1.08004 * 119.92113 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.08405 * 180.27799 * 10 9 8 33 33 H 0.96997 * 120.00186 * 180.02562 * 15 14 12 34 34 H 1.07995 * 120.08563 * 179.97438 * 20 11 10 35 35 H 1.07997 * 119.91427 * 179.97438 * 21 20 11 36 36 H 1.08998 * 109.50567 * 62.28263 * 22 5 4 37 37 H 1.09001 * 109.50548 * 182.36612 * 22 5 4 38 38 H 1.09001 * 109.46320 * 179.19463 * 23 22 5 39 39 H 1.09002 * 109.46071 * 299.15713 * 23 22 5 40 40 H 1.00906 * 110.99784 * 174.16311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 1 3.9379 -1.2854 -2.1025 7 7 4.0746 0.6389 -1.2780 8 6 5.3413 0.8990 -1.7840 9 6 6.1341 -0.1527 -2.2459 10 6 7.3765 0.0959 -2.7493 11 6 7.8641 1.4170 -2.7918 12 6 9.1518 1.6813 -3.3056 13 1 9.3815 2.6550 -3.7123 14 6 10.1303 0.6821 -3.2882 15 7 9.9910 -0.3569 -2.5043 16 14 11.6361 0.8303 -4.3836 17 1 12.7475 1.4480 -3.6165 18 1 12.0453 -0.5196 -4.8478 19 1 11.3126 1.6804 -5.5575 20 6 7.0606 2.4730 -2.3184 21 6 5.8176 2.2102 -1.8235 22 6 4.0548 -1.4189 0.0467 23 6 3.4864 -0.6777 1.2591 24 7 2.0193 -0.6918 1.1994 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8897 28 1 1.6659 -1.7448 -1.2575 29 1 1.6889 -0.1986 -2.1399 30 1 3.5233 1.3677 -0.9527 31 1 5.7608 -1.1655 -2.2083 32 1 7.9871 -0.7183 -3.1105 33 1 10.6698 -1.0497 -2.4919 34 1 7.4281 3.4880 -2.3476 35 1 5.2007 3.0187 -1.4599 36 1 3.7124 -2.4536 0.0595 37 1 5.1439 -1.3954 0.0828 38 1 3.8174 -1.1699 2.1736 39 1 3.8404 0.3532 1.2532 40 1 1.6195 -0.2925 2.0354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692144839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = -1.498117 kcal Electronic energy + Delta-G solvation = -19412.557543 eV Core-core repulsion = 16611.275092 eV Total energy + Delta-G solvation = -2801.282451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63851 -39.15365 -36.29767 -34.74846 -33.16242 -32.05757 -31.33770 -29.74957 -27.88831 -26.12010 -24.59677 -22.90082 -22.59771 -22.07266 -19.83762 -19.15475 -17.93996 -17.32746 -16.79306 -16.46964 -15.90135 -15.64752 -15.35288 -14.82193 -14.65998 -14.41819 -14.12053 -13.72002 -13.61560 -13.34182 -13.13999 -12.96714 -12.73887 -12.72807 -12.60301 -12.38921 -12.27942 -11.92049 -11.66249 -11.53048 -11.25303 -11.12421 -11.00755 -10.26999 -9.40134 -9.36017 -8.54825 -8.14737 -6.00290 1.11167 1.18457 1.39778 1.52433 1.59204 2.27426 2.83984 2.88840 3.25879 3.81697 3.82912 3.91424 4.08792 4.23986 4.40708 4.41675 4.47832 4.49409 4.61657 4.79402 4.85531 4.91073 4.98126 5.01842 5.07145 5.11341 5.19151 5.22306 5.26665 5.31749 5.40408 5.45930 5.70861 5.81298 5.96646 6.10443 6.19133 6.39744 6.52841 6.68154 6.88608 7.08770 7.14644 7.31394 8.48607 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044318 B = 0.004214 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.650339 B = 6642.903854 C = 6884.530857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.084 3.916 3 H 0.030 0.970 4 C -0.109 4.109 5 C 0.155 3.845 6 H 0.059 0.941 7 N -0.741 5.741 8 C 0.118 3.882 9 C -0.172 4.172 10 C -0.142 4.142 11 C 0.035 3.965 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.033 3.967 15 N -0.842 5.842 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.262 1.262 20 C -0.196 4.196 21 C -0.169 4.169 22 C -0.129 4.129 23 C 0.070 3.930 24 N -0.682 5.682 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.390 0.610 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.282 0.718 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 -1.915 5.077 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 H 0.048 0.952 4 C -0.148 4.148 5 C 0.049 3.951 6 H 0.077 0.923 7 N -0.376 5.376 8 C 0.018 3.982 9 C -0.194 4.194 10 C -0.162 4.162 11 C 0.032 3.968 12 C -0.539 4.539 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.470 5.470 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.216 4.216 21 C -0.191 4.191 22 C -0.169 4.169 23 C -0.060 4.060 24 N -0.315 5.315 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.225 0.775 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.216 -2.934 4.838 16.234 hybrid contribution 1.205 1.195 -0.016 1.697 sum -14.011 -1.739 4.822 14.919 Atomic orbital electron populations 1.21771 0.92638 1.02809 1.02437 1.21455 0.96204 0.94557 0.90405 0.95248 1.21849 0.92762 1.02480 0.97676 1.20783 0.94316 0.83349 0.96641 0.92311 1.44033 1.14442 1.07079 1.72022 1.17431 0.87242 0.92581 1.00927 1.20237 0.95484 0.96964 1.06698 1.20859 0.94811 0.97171 1.03402 1.17799 0.93677 0.92053 0.93242 1.19589 0.96584 0.99241 1.38515 0.91515 1.26594 1.02390 0.93962 0.94965 1.69919 1.35530 1.10000 1.31576 0.85303 0.77269 0.78682 0.79047 1.19034 1.19264 1.18544 1.20735 0.96464 0.97831 1.06557 1.20069 0.97036 0.94578 1.07397 1.21989 0.99345 1.00012 0.95535 1.21688 0.87916 0.98175 0.98203 1.60361 1.06520 1.59380 1.05212 0.91683 0.91895 0.91423 0.89529 0.90777 0.77464 0.87831 0.88473 0.90798 0.88701 0.86861 0.90378 0.93768 0.90544 0.96284 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.43 71.98 0.68 -1.31 16 2 C 0.08 1.59 2.88 44.94 0.13 1.72 16 3 H 0.03 0.61 6.64 -2.39 -0.02 0.60 16 4 C -0.11 -2.36 5.04 30.65 0.15 -2.21 16 5 C 0.16 4.40 2.48 45.07 0.11 4.52 16 6 H 0.06 1.86 6.46 -2.39 -0.02 1.85 16 7 N -0.74 -24.19 4.48 -318.17 -1.43 -25.62 16 8 C 0.12 5.01 6.65 38.67 0.26 5.26 16 9 C -0.17 -8.13 8.76 22.15 0.19 -7.93 16 10 C -0.14 -7.79 8.63 22.48 0.19 -7.60 16 11 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 12 C -0.51 -29.01 9.03 23.38 0.21 -28.80 16 13 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 14 C 0.03 1.75 5.13 85.23 0.44 2.18 16 15 N -0.84 -46.58 10.98 21.82 0.24 -46.34 16 16 Si 0.98 40.61 29.59 68.60 2.03 42.64 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 21 C -0.17 -7.48 9.82 22.15 0.22 -7.27 16 22 C -0.13 -3.62 5.69 30.65 0.17 -3.44 16 23 C 0.07 1.69 6.40 86.33 0.55 2.24 16 24 N -0.68 -13.45 6.50 -491.69 -3.20 -16.65 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.39 11.43 7.01 -92.71 -0.65 10.78 16 31 H 0.10 4.50 6.10 -2.91 -0.02 4.48 16 32 H 0.10 5.61 6.18 -2.91 -0.02 5.59 16 33 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 34 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.49 7.74 -2.39 -0.02 1.47 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.02 0.52 7.69 -2.39 -0.02 0.50 16 40 H 0.35 5.65 8.79 -89.69 -0.79 4.87 16 Total: -1.00 -61.40 314.05 0.66 -60.74 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.40 Total: 35.73 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 3.41 Total: -50.50 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.38 Total: -88.61 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -61.40 0.66 -60.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692144839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.244 kcal (2) G-P(sol) polarization free energy of solvation -61.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds