Wall clock time and date at job start Mon Mar 30 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47583 * 2 1 4 4 C 1.53005 * 109.46905 * 239.99605 * 2 1 3 5 5 N 1.46904 * 109.46924 * 64.48372 * 4 2 1 6 6 C 1.47899 * 111.00277 * 65.45591 * 5 4 2 7 7 C 1.53998 * 107.05694 * 145.84283 * 6 5 4 8 8 C 1.54595 * 105.13774 * 358.77895 * 7 6 5 9 9 H 1.09000 * 110.72344 * 96.57535 * 8 7 6 10 10 C 1.50700 * 110.72297 * 219.68128 * 8 7 6 11 11 H 1.07996 * 120.00268 * 118.54538 * 10 8 7 12 12 C 1.37884 * 119.99785 * 298.54934 * 10 8 7 13 13 N 1.31506 * 120.00177 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99737 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46797 * 269.99942 * 14 12 10 16 16 H 1.48494 * 109.46922 * 149.99731 * 14 12 10 17 17 H 1.48500 * 109.47312 * 29.99493 * 14 12 10 18 18 C 1.48535 * 110.99717 * 182.85623 * 5 4 2 19 19 C 1.50704 * 109.47164 * 120.00025 * 2 1 3 20 20 C 1.38225 * 119.61551 * 34.72811 * 19 2 1 21 21 C 1.38634 * 119.15679 * 179.71261 * 20 19 2 22 22 C 1.38666 * 118.41804 * 0.54778 * 21 20 19 23 23 C 1.38179 * 119.16859 * 359.73140 * 22 21 20 24 24 N 1.31857 * 119.61611 * 214.99607 * 19 2 1 25 25 H 1.09001 * 109.46860 * 293.48657 * 1 2 3 26 26 H 1.09005 * 109.46867 * 53.48219 * 1 2 3 27 27 H 1.08998 * 109.46997 * 173.48499 * 1 2 3 28 28 H 1.08993 * 109.47451 * 304.48049 * 4 2 1 29 29 H 1.09007 * 109.46957 * 184.47860 * 4 2 1 30 30 H 1.08999 * 109.91367 * 26.49245 * 6 5 4 31 31 H 1.08998 * 109.92061 * 265.19785 * 6 5 4 32 32 H 1.08993 * 110.31006 * 239.85798 * 7 6 5 33 33 H 1.09002 * 110.39029 * 117.73748 * 7 6 5 34 34 H 0.97003 * 119.99979 * 359.97438 * 13 12 10 35 35 H 1.09003 * 110.66604 * 81.84639 * 18 5 4 36 36 H 1.08997 * 110.66961 * 318.71059 * 18 5 4 37 37 H 1.08004 * 120.42345 * 359.97438 * 20 19 2 38 38 H 1.07996 * 120.78637 * 180.30089 * 21 20 19 39 39 H 1.08005 * 120.41585 * 179.70671 * 22 21 20 40 40 H 1.07997 * 119.62095 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6406 0.0308 -2.4463 6 6 2.3073 1.3503 -2.4901 7 6 2.5756 1.6718 -3.9721 8 6 2.0505 0.4451 -4.7528 9 1 1.0396 0.6245 -5.1186 10 6 2.9751 0.1027 -5.8925 11 1 3.4667 -0.8585 -5.9190 12 6 3.1934 1.0167 -6.9016 13 7 2.5944 2.1870 -6.8696 14 14 4.3389 0.5919 -8.3147 15 1 5.7221 1.0113 -7.9738 16 1 3.8950 1.3006 -9.5418 17 1 4.3103 -0.8737 -8.5518 18 6 2.0599 -0.6761 -3.6835 19 6 2.0323 -0.7104 1.2305 20 6 1.3289 -1.7899 1.7310 21 6 1.8029 -2.4402 2.8600 22 6 2.9655 -1.9711 3.4524 23 6 3.6116 -0.8823 2.8987 24 7 3.1349 -0.2917 1.8202 25 1 -0.3633 0.4096 0.9425 26 1 -0.3633 0.6116 -0.8260 27 1 -0.3633 -1.0210 -0.1166 28 1 1.6126 -1.7232 -1.2903 29 1 3.1271 -0.7914 -1.2100 30 1 3.2490 1.3088 -1.9428 31 1 1.6563 2.1098 -2.0573 32 1 3.6442 1.8005 -4.1438 33 1 2.0343 2.5698 -4.2699 34 1 1.9987 2.4071 -6.1364 35 1 1.3457 -1.4585 -3.9403 36 1 3.0615 -1.0905 -3.5693 37 1 0.4239 -2.1252 1.2463 38 1 1.2769 -3.2893 3.2705 39 1 3.3609 -2.4504 4.3358 40 1 4.5175 -0.5107 3.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692875131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:48 Heat of formation + Delta-G solvation = 24.599337 kcal Electronic energy + Delta-G solvation = -19214.961399 eV Core-core repulsion = 16414.810619 eV Total energy + Delta-G solvation = -2800.150780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45441 -38.34334 -35.32777 -33.02861 -32.59804 -30.46657 -29.06799 -28.21047 -25.75364 -24.08417 -23.59938 -23.27310 -20.92447 -20.01497 -19.19683 -16.99411 -16.84759 -16.43754 -15.57636 -15.28373 -14.80733 -14.30646 -13.91503 -13.75896 -13.61807 -13.21474 -13.07178 -12.68763 -12.31147 -12.04906 -11.73587 -11.56247 -11.24696 -11.15923 -10.85787 -10.66847 -10.45606 -10.41119 -10.08299 -10.00455 -9.77248 -9.51229 -9.38572 -9.05074 -8.45779 -8.31182 -7.82293 -6.30183 -4.02642 0.97019 1.14200 3.45125 3.48372 3.64147 3.65401 4.09048 4.49881 4.57015 4.66705 4.83042 4.90926 4.99785 5.06207 5.26063 5.34815 5.42517 5.50793 5.68777 5.72125 5.74396 5.86378 5.93849 5.97576 6.01398 6.09824 6.15641 6.30959 6.34877 6.39654 6.47072 6.58189 6.71072 6.95988 6.99056 7.30214 7.48740 7.63278 7.75657 7.91525 8.29551 8.46947 8.92715 9.69763 11.08372 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039176 B = 0.003866 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.558163 B = 7241.223831 C = 7419.856355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 H 0.090 0.910 4 C 0.062 3.938 5 N -0.518 5.518 6 C 0.037 3.963 7 C -0.121 4.121 8 C 0.037 3.963 9 H 0.028 0.972 10 C -0.596 4.596 11 H 0.048 0.952 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 1.069 2.931 15 H -0.289 1.289 16 H -0.285 1.285 17 H -0.289 1.289 18 C 0.049 3.951 19 C 0.144 3.856 20 C -0.168 4.168 21 C -0.076 4.076 22 C -0.185 4.185 23 C 0.100 3.900 24 N -0.483 5.483 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.274 0.726 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -7.379 19.276 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 H 0.108 0.892 4 C -0.068 4.068 5 N -0.242 5.242 6 C -0.091 4.091 7 C -0.159 4.159 8 C 0.018 3.982 9 H 0.046 0.954 10 C -0.635 4.635 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.549 5.549 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.210 1.210 17 H -0.216 1.216 18 C -0.078 4.078 19 C 0.006 3.994 20 C -0.188 4.188 21 C -0.102 4.102 22 C -0.205 4.205 23 C -0.058 4.058 24 N -0.192 5.192 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.587 -6.018 17.550 18.621 hybrid contribution -0.040 -1.525 2.007 2.521 sum -1.627 -7.544 19.557 21.024 Atomic orbital electron populations 1.21757 0.93245 1.02303 1.01805 1.20116 0.96529 0.99881 0.89519 0.89209 1.22171 0.97700 0.97093 0.89812 1.64752 1.54698 1.03228 1.01505 1.22895 0.95935 0.91427 0.98817 1.22620 1.01144 1.00295 0.91887 1.19687 0.96737 0.89624 0.92131 0.95389 1.21964 1.29888 1.03604 1.08047 0.93338 1.25757 0.98757 0.93557 1.00342 1.70747 1.28086 1.21568 1.34526 0.83540 0.75643 0.75137 0.75879 1.21585 1.21023 1.21560 1.23232 0.97419 0.97837 0.89272 1.21387 0.90110 0.92590 0.95340 1.22061 1.01934 0.97240 0.97582 1.21591 0.95340 0.98558 0.94726 1.22105 0.97293 0.99094 1.01984 1.22763 0.98813 0.92412 0.91768 1.67547 1.12308 1.30355 1.08979 0.93433 0.90474 0.92629 0.91291 0.94979 0.94892 0.91877 0.92216 0.92803 0.91449 0.91794 0.94632 0.84483 0.84987 0.85040 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.22 37.16 0.31 -1.32 16 2 C -0.04 -0.57 2.65 -91.77 -0.24 -0.82 16 3 H 0.09 1.38 7.20 -51.93 -0.37 1.01 16 4 C 0.06 0.99 4.11 -3.82 -0.02 0.97 16 5 N -0.52 -9.75 4.85 -230.44 -1.12 -10.87 16 6 C 0.04 0.73 5.52 -2.75 -0.02 0.71 16 7 C -0.12 -2.84 5.34 -25.37 -0.14 -2.97 16 8 C 0.04 0.94 2.62 -89.91 -0.24 0.71 16 9 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 10 C -0.60 -16.79 8.42 -34.44 -0.29 -17.08 16 11 H 0.05 1.36 7.78 -52.49 -0.41 0.95 16 12 C 0.02 0.58 5.33 -17.82 -0.10 0.49 16 13 N -0.91 -27.42 13.42 55.43 0.74 -26.67 16 14 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.05 1.07 5.97 -1.90 -0.01 1.05 16 19 C 0.14 1.92 5.79 -82.58 -0.48 1.44 16 20 C -0.17 -1.84 9.18 -39.44 -0.36 -2.20 16 21 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 22 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 23 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 24 N -0.48 -6.79 10.27 -9.47 -0.10 -6.88 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 27 H 0.05 0.61 6.86 -51.93 -0.36 0.26 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 30 H 0.03 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.06 1.15 8.11 -51.93 -0.42 0.72 16 32 H 0.06 1.51 7.84 -51.93 -0.41 1.11 16 33 H 0.05 1.29 6.96 -51.93 -0.36 0.93 16 34 H 0.27 8.12 5.53 -40.82 -0.23 7.89 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.79 7.92 -51.93 -0.41 0.38 16 37 H 0.14 1.28 6.46 -52.48 -0.34 0.94 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -30.96 319.25 -9.59 -40.55 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.28 Total: 0.11 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.57 Total: -21.29 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.47 Total: -44.43 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.96 -9.59 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692875131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.151 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds