Wall clock time and date at job start Mon Mar 30 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47583 * 2 1 4 4 C 1.53005 * 109.46905 * 239.99605 * 2 1 3 5 5 N 1.46904 * 109.46924 * 64.48372 * 4 2 1 6 6 C 1.47899 * 111.00277 * 65.45591 * 5 4 2 7 7 C 1.53998 * 107.05694 * 145.84283 * 6 5 4 8 8 C 1.54595 * 105.13774 * 358.77895 * 7 6 5 9 9 H 1.09000 * 110.72344 * 96.57535 * 8 7 6 10 10 C 1.50700 * 110.72297 * 219.68128 * 8 7 6 11 11 H 1.07996 * 120.00268 * 118.54538 * 10 8 7 12 12 C 1.37884 * 119.99785 * 298.54934 * 10 8 7 13 13 N 1.31506 * 120.00177 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99737 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46797 * 269.99942 * 14 12 10 16 16 H 1.48494 * 109.46922 * 149.99731 * 14 12 10 17 17 H 1.48500 * 109.47312 * 29.99493 * 14 12 10 18 18 C 1.48535 * 110.99717 * 182.85623 * 5 4 2 19 19 C 1.50704 * 109.47164 * 120.00025 * 2 1 3 20 20 C 1.38225 * 119.61551 * 34.72811 * 19 2 1 21 21 C 1.38634 * 119.15679 * 179.71261 * 20 19 2 22 22 C 1.38666 * 118.41804 * 0.54778 * 21 20 19 23 23 C 1.38179 * 119.16859 * 359.73140 * 22 21 20 24 24 N 1.31857 * 119.61611 * 214.99607 * 19 2 1 25 25 H 1.09001 * 109.46860 * 293.48657 * 1 2 3 26 26 H 1.09005 * 109.46867 * 53.48219 * 1 2 3 27 27 H 1.08998 * 109.46997 * 173.48499 * 1 2 3 28 28 H 1.08993 * 109.47451 * 304.48049 * 4 2 1 29 29 H 1.09007 * 109.46957 * 184.47860 * 4 2 1 30 30 H 1.08999 * 109.91367 * 26.49245 * 6 5 4 31 31 H 1.08998 * 109.92061 * 265.19785 * 6 5 4 32 32 H 1.08993 * 110.31006 * 239.85798 * 7 6 5 33 33 H 1.09002 * 110.39029 * 117.73748 * 7 6 5 34 34 H 0.97003 * 119.99979 * 359.97438 * 13 12 10 35 35 H 1.09003 * 110.66604 * 81.84639 * 18 5 4 36 36 H 1.08997 * 110.66961 * 318.71059 * 18 5 4 37 37 H 1.08004 * 120.42345 * 359.97438 * 20 19 2 38 38 H 1.07996 * 120.78637 * 180.30089 * 21 20 19 39 39 H 1.08005 * 120.41585 * 179.70671 * 22 21 20 40 40 H 1.07997 * 119.62095 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6406 0.0308 -2.4463 6 6 2.3073 1.3503 -2.4901 7 6 2.5756 1.6718 -3.9721 8 6 2.0505 0.4451 -4.7528 9 1 1.0396 0.6245 -5.1186 10 6 2.9751 0.1027 -5.8925 11 1 3.4667 -0.8585 -5.9190 12 6 3.1934 1.0167 -6.9016 13 7 2.5944 2.1870 -6.8696 14 14 4.3389 0.5919 -8.3147 15 1 5.7221 1.0113 -7.9738 16 1 3.8950 1.3006 -9.5418 17 1 4.3103 -0.8737 -8.5518 18 6 2.0599 -0.6761 -3.6835 19 6 2.0323 -0.7104 1.2305 20 6 1.3289 -1.7899 1.7310 21 6 1.8029 -2.4402 2.8600 22 6 2.9655 -1.9711 3.4524 23 6 3.6116 -0.8823 2.8987 24 7 3.1349 -0.2917 1.8202 25 1 -0.3633 0.4096 0.9425 26 1 -0.3633 0.6116 -0.8260 27 1 -0.3633 -1.0210 -0.1166 28 1 1.6126 -1.7232 -1.2903 29 1 3.1271 -0.7914 -1.2100 30 1 3.2490 1.3088 -1.9428 31 1 1.6563 2.1098 -2.0573 32 1 3.6442 1.8005 -4.1438 33 1 2.0343 2.5698 -4.2699 34 1 1.9987 2.4071 -6.1364 35 1 1.3457 -1.4585 -3.9403 36 1 3.0615 -1.0905 -3.5693 37 1 0.4239 -2.1252 1.2463 38 1 1.2769 -3.2893 3.2705 39 1 3.3609 -2.4504 4.3358 40 1 4.5175 -0.5107 3.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692875131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:48 Heat of formation + Delta-G solvation = 5.803332 kcal Electronic energy + Delta-G solvation = -19215.776455 eV Core-core repulsion = 16414.810619 eV Total energy + Delta-G solvation = -2800.965836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32508 -39.95256 -36.69794 -34.84684 -33.38816 -31.91036 -30.29822 -30.01879 -27.11175 -25.91033 -24.69507 -24.22042 -22.24514 -21.83281 -20.69929 -18.90811 -17.80399 -17.37532 -17.02337 -16.46402 -16.09807 -15.65980 -15.59517 -15.10422 -14.78503 -14.54144 -14.28339 -13.93680 -13.87273 -13.54854 -13.12876 -13.05882 -12.70835 -12.47125 -12.35877 -12.26823 -11.96865 -11.90503 -11.79839 -11.71291 -11.32823 -10.79670 -10.59215 -10.48491 -10.33278 -9.89505 -9.42182 -8.58617 -6.32158 0.17380 0.38791 1.52806 1.61329 1.79049 2.56947 2.79152 3.01536 3.20769 3.40281 3.79334 3.90467 3.91963 4.03129 4.11032 4.19125 4.25160 4.27504 4.34516 4.37457 4.45686 4.64797 4.68180 4.74354 4.77082 4.83624 4.91607 5.02047 5.04300 5.10914 5.12205 5.26544 5.30701 5.35519 5.44224 5.60852 5.76879 5.82748 6.10371 6.15771 6.23292 6.66644 7.09217 7.48604 8.80455 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039176 B = 0.003866 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.558163 B = 7241.223831 C = 7419.856355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 H 0.069 0.931 4 C 0.067 3.933 5 N -0.511 5.511 6 C 0.049 3.951 7 C -0.112 4.112 8 C 0.026 3.974 9 H 0.003 0.997 10 C -0.611 4.611 11 H 0.045 0.955 12 C -0.029 4.029 13 N -0.937 5.937 14 Si 1.116 2.884 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.061 3.939 19 C 0.118 3.882 20 C -0.172 4.172 21 C -0.076 4.076 22 C -0.175 4.175 23 C 0.081 3.919 24 N -0.523 5.523 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.015 0.985 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -9.284 21.206 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.053 4.053 3 H 0.088 0.912 4 C -0.062 4.062 5 N -0.235 5.235 6 C -0.078 4.078 7 C -0.151 4.151 8 C 0.007 3.993 9 H 0.021 0.979 10 C -0.649 4.649 11 H 0.063 0.937 12 C -0.228 4.228 13 N -0.574 5.574 14 Si 0.938 3.062 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.067 4.067 19 C -0.020 4.020 20 C -0.191 4.191 21 C -0.101 4.101 22 C -0.194 4.194 23 C -0.076 4.076 24 N -0.232 5.232 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.671 -7.933 19.509 21.126 hybrid contribution -0.012 -0.972 1.511 1.796 sum -1.683 -8.905 21.020 22.890 Atomic orbital electron populations 1.21697 0.91829 1.03029 1.01853 1.19958 0.97588 0.98553 0.89157 0.91237 1.22208 0.96805 0.97766 0.89422 1.64764 1.54264 1.02774 1.01669 1.22768 0.96668 0.92497 0.95915 1.22409 0.99056 0.99177 0.94431 1.19669 0.94788 0.91936 0.92889 0.97886 1.22321 1.30062 1.03432 1.09131 0.93695 1.27191 0.99607 0.93041 1.02937 1.70858 1.29217 1.22691 1.34649 0.82947 0.74298 0.75967 0.73011 1.20250 1.20828 1.19642 1.23018 0.97381 0.96874 0.89409 1.21260 0.91030 0.94057 0.95649 1.22254 1.02186 0.96492 0.98214 1.22039 0.95293 0.98985 0.93808 1.22499 0.96685 0.97872 1.02377 1.23199 0.99763 0.93255 0.91356 1.67450 1.13210 1.31972 1.10603 0.92119 0.92058 0.91116 0.89791 0.96696 0.94627 0.90044 0.94738 0.93994 0.92548 0.90701 0.95449 0.83000 0.81635 0.81695 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.22 71.98 0.59 -2.30 16 2 C -0.03 -0.90 2.65 -11.54 -0.03 -0.93 16 3 H 0.07 2.15 7.20 -2.39 -0.02 2.13 16 4 C 0.07 2.10 4.11 86.30 0.36 2.46 16 5 N -0.51 -19.13 4.85 -882.99 -4.28 -23.42 16 6 C 0.05 1.96 5.52 86.45 0.48 2.44 16 7 C -0.11 -5.45 5.34 31.47 0.17 -5.28 16 8 C 0.03 1.37 2.62 -10.33 -0.03 1.34 16 9 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 10 C -0.61 -35.09 8.42 25.60 0.22 -34.87 16 11 H 0.04 2.55 7.78 -2.91 -0.02 2.53 16 12 C -0.03 -1.68 5.33 84.66 0.45 -1.23 16 13 N -0.94 -57.64 13.42 21.45 0.29 -57.36 16 14 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 C 0.06 2.63 5.97 86.65 0.52 3.15 16 19 C 0.12 2.99 5.79 42.55 0.25 3.23 16 20 C -0.17 -3.30 9.18 22.36 0.21 -3.10 16 21 C -0.08 -1.11 10.18 22.47 0.23 -0.88 16 22 C -0.17 -2.57 10.11 22.36 0.23 -2.34 16 23 C 0.08 1.63 11.18 84.67 0.95 2.58 16 24 N -0.52 -14.31 10.27 -183.89 -1.89 -16.20 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.59 7.92 -2.38 -0.02 1.57 16 27 H 0.07 1.39 6.86 -2.39 -0.02 1.37 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.01 0.52 7.94 -2.38 -0.02 0.50 16 30 H 0.04 1.39 7.65 -2.39 -0.02 1.37 16 31 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 32 H 0.03 1.81 7.84 -2.39 -0.02 1.79 16 33 H 0.04 2.09 6.96 -2.39 -0.02 2.08 16 34 H 0.26 16.27 5.53 -92.71 -0.51 15.75 16 35 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.03 1.22 7.92 -2.39 -0.02 1.20 16 37 H 0.15 2.34 6.46 -2.91 -0.02 2.32 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -68.52 319.25 1.99 -66.53 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.26 Total: 13.09 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.57 Total: -35.73 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -5.88 Total: -96.98 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -68.52 1.99 -66.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692875131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.333 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds