Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47073 * 2 1 4 4 C 1.53002 * 109.47235 * 120.00363 * 2 1 3 5 5 N 1.46902 * 109.46633 * 294.99687 * 4 2 1 6 6 C 1.48531 * 111.00261 * 307.39787 * 5 4 2 7 7 C 1.54938 * 103.22583 * 200.27969 * 6 5 4 8 8 C 1.54601 * 102.92236 * 37.41583 * 7 6 5 9 9 H 1.08997 * 110.39127 * 96.99666 * 8 7 6 10 10 C 1.50698 * 110.30620 * 219.12686 * 8 7 6 11 11 H 1.08005 * 119.99819 * 115.71654 * 10 8 7 12 12 C 1.37875 * 120.00046 * 295.70995 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47901 * 110.99717 * 189.99681 * 5 4 2 19 19 C 1.50702 * 109.46931 * 240.00312 * 2 1 3 20 20 C 1.38236 * 119.61696 * 324.99558 * 19 2 1 21 21 C 1.38626 * 119.15542 * 179.97438 * 20 19 2 22 22 C 1.38670 * 118.42690 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16180 * 0.02562 * 22 21 20 24 24 N 1.31854 * 119.62052 * 144.72936 * 19 2 1 25 25 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47301 * 299.99842 * 1 2 3 27 27 H 1.09002 * 109.47438 * 60.00208 * 1 2 3 28 28 H 1.08994 * 109.47089 * 175.00126 * 4 2 1 29 29 H 1.09002 * 109.47292 * 54.99692 * 4 2 1 30 30 H 1.09000 * 110.66918 * 318.71547 * 6 5 4 31 31 H 1.08995 * 110.66750 * 81.84704 * 6 5 4 32 32 H 1.08998 * 110.72347 * 279.05865 * 7 6 5 33 33 H 1.09000 * 110.72538 * 155.77173 * 7 6 5 34 34 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 35 35 H 1.09008 * 109.91708 * 26.49545 * 18 5 4 36 36 H 1.08998 * 110.08690 * 265.29420 * 18 5 4 37 37 H 1.07994 * 120.41790 * 0.02562 * 20 19 2 38 38 H 1.08002 * 120.78300 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.41867 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.61760 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.0754 1.4567 2.3368 7 6 2.0776 1.9398 3.8090 8 6 2.6030 0.7053 4.5772 9 1 3.6731 0.7999 4.7616 10 6 1.8608 0.5445 5.8788 11 1 1.2438 -0.3263 6.0446 12 6 1.9696 1.5089 6.8581 13 7 2.7206 2.5695 6.6561 14 14 1.0502 1.3093 8.4719 15 1 1.3315 2.4739 9.3493 16 1 1.4963 0.0629 9.1448 17 1 -0.4085 1.2325 8.2044 18 6 2.3240 -0.4932 3.6513 19 6 2.0323 -0.7104 -1.2305 20 6 1.3319 -1.7934 -1.7278 21 6 1.8023 -2.4394 -2.8606 22 6 2.9643 -1.9697 -3.4539 23 6 3.6106 -0.8812 -2.8998 24 7 3.1318 -0.2884 -1.8234 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 3.0745 1.5280 1.9071 31 1 1.3596 2.0278 1.7457 32 1 1.0686 2.1949 4.1327 33 1 2.7505 2.7880 3.9356 34 1 3.1983 2.6730 5.8183 35 1 3.2621 -0.9731 3.3723 36 1 1.6764 -1.2098 4.1564 37 1 0.4294 -2.1314 -1.2405 38 1 1.2761 -3.2885 -3.2713 39 1 3.3596 -2.4490 -4.3373 40 1 4.5164 -0.5094 -3.3556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692875139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = 27.429249 kcal Electronic energy + Delta-G solvation = -19261.583369 eV Core-core repulsion = 16461.555303 eV Total energy + Delta-G solvation = -2800.028066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47399 -38.39985 -35.31734 -32.97639 -32.60718 -30.46631 -29.13674 -28.17593 -25.72297 -24.04718 -23.63033 -23.26628 -21.10112 -19.71889 -19.37736 -17.00950 -16.83360 -16.49473 -15.54759 -15.44018 -14.78184 -14.14124 -14.05294 -13.70259 -13.46551 -13.33395 -13.09782 -12.70484 -12.30448 -11.93362 -11.83623 -11.41864 -11.28367 -11.06329 -10.75881 -10.61255 -10.57687 -10.37346 -10.06119 -10.01339 -9.75676 -9.58029 -9.48403 -9.05744 -8.39978 -8.29961 -7.77348 -6.27374 -3.98350 0.96237 1.13457 3.47948 3.49834 3.64630 3.68262 4.08389 4.50863 4.58801 4.65865 4.81261 4.90335 4.98888 5.05246 5.23803 5.33009 5.43708 5.49438 5.69591 5.73282 5.75488 5.84355 5.93604 5.99099 6.00379 6.09539 6.14685 6.19276 6.35958 6.37073 6.48713 6.58782 6.75429 6.91861 7.05029 7.30188 7.36452 7.71067 7.82821 7.90592 8.30347 8.49983 8.95204 9.72576 11.10840 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.047774 B = 0.003828 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.954894 B = 7312.836056 C = 7457.328667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 H 0.092 0.908 4 C 0.061 3.939 5 N -0.510 5.510 6 C 0.032 3.968 7 C -0.110 4.110 8 C 0.025 3.975 9 H 0.019 0.981 10 C -0.586 4.586 11 H 0.050 0.950 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 1.067 2.933 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.053 3.947 19 C 0.144 3.856 20 C -0.169 4.169 21 C -0.076 4.076 22 C -0.185 4.185 23 C 0.099 3.901 24 N -0.483 5.483 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -8.118 -19.064 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 H 0.110 0.890 4 C -0.069 4.069 5 N -0.234 5.234 6 C -0.096 4.096 7 C -0.148 4.148 8 C 0.006 3.994 9 H 0.037 0.963 10 C -0.625 4.625 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.551 5.551 14 Si 0.896 3.104 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.215 1.215 18 C -0.075 4.075 19 C 0.006 3.994 20 C -0.188 4.188 21 C -0.102 4.102 22 C -0.205 4.205 23 C -0.058 4.058 24 N -0.192 5.192 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.417 -6.730 -17.207 18.633 hybrid contribution 0.870 -1.575 -2.152 2.805 sum -1.547 -8.304 -19.359 21.122 Atomic orbital electron populations 1.21812 0.93174 1.02066 1.02447 1.20201 0.96656 0.99983 0.89596 0.88994 1.22219 0.97565 0.97471 0.89602 1.64791 1.54815 1.02244 1.01557 1.23287 0.97352 0.89728 0.99223 1.22686 1.01658 0.98854 0.91644 1.19643 0.95999 0.89691 0.94073 0.96270 1.21992 1.31283 1.09042 1.00148 0.93176 1.25775 0.97026 0.92972 1.02876 1.70791 1.28073 1.28087 1.28151 0.83566 0.75720 0.75762 0.75357 1.20925 1.21591 1.21470 1.22966 0.95042 0.99174 0.90286 1.21372 0.90162 0.92554 0.95317 1.22077 1.01958 0.97254 0.97536 1.21593 0.95347 0.98576 0.94685 1.22107 0.97282 0.99097 1.01984 1.22761 0.98805 0.92396 0.91810 1.67539 1.12297 1.30409 1.08975 0.92570 0.90177 0.93328 0.95170 0.91194 0.94994 0.91449 0.91360 0.93021 0.91791 0.96275 0.90877 0.84410 0.84976 0.85036 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.51 37.16 0.32 -1.39 16 2 C -0.05 -0.63 2.39 -91.77 -0.22 -0.85 16 3 H 0.09 1.41 6.52 -51.93 -0.34 1.07 16 4 C 0.06 0.98 4.40 -3.82 -0.02 0.96 16 5 N -0.51 -9.77 4.85 -230.45 -1.12 -10.89 16 6 C 0.03 0.62 5.09 -1.90 -0.01 0.61 16 7 C -0.11 -2.56 5.57 -24.87 -0.14 -2.70 16 8 C 0.02 0.63 2.54 -90.41 -0.23 0.40 16 9 H 0.02 0.52 7.95 -51.93 -0.41 0.11 16 10 C -0.59 -16.52 8.37 -34.44 -0.29 -16.81 16 11 H 0.05 1.41 7.34 -52.48 -0.39 1.02 16 12 C 0.02 0.50 5.34 -17.82 -0.10 0.40 16 13 N -0.91 -27.55 13.45 55.43 0.75 -26.80 16 14 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.05 1.15 6.35 -2.75 -0.02 1.13 16 19 C 0.14 1.92 5.79 -82.58 -0.48 1.44 16 20 C -0.17 -1.84 9.18 -39.44 -0.36 -2.20 16 21 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 22 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 23 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 24 N -0.48 -6.75 10.27 -9.47 -0.10 -6.85 16 25 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 26 H 0.08 1.12 7.75 -51.93 -0.40 0.72 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.52 7.81 -51.93 -0.41 0.12 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.61 8.01 -51.93 -0.42 0.19 16 31 H 0.07 1.19 7.56 -51.93 -0.39 0.80 16 32 H 0.07 1.72 7.86 -51.93 -0.41 1.32 16 33 H 0.05 1.22 7.10 -51.93 -0.37 0.86 16 34 H 0.27 8.06 5.65 -40.82 -0.23 7.83 16 35 H 0.02 0.40 7.57 -51.92 -0.39 0.00 16 36 H 0.07 1.64 7.39 -51.93 -0.38 1.26 16 37 H 0.14 1.29 6.31 -52.49 -0.33 0.96 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -31.17 316.54 -9.43 -40.60 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.12 Total: 0.19 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.53 Total: -21.29 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.47 Total: -44.54 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.17 -9.43 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692875139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.028 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds