Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47073 * 2 1 4 4 C 1.53002 * 109.47235 * 120.00363 * 2 1 3 5 5 N 1.46902 * 109.46633 * 294.99687 * 4 2 1 6 6 C 1.48531 * 111.00261 * 307.39787 * 5 4 2 7 7 C 1.54938 * 103.22583 * 200.27969 * 6 5 4 8 8 C 1.54601 * 102.92236 * 37.41583 * 7 6 5 9 9 H 1.08997 * 110.39127 * 96.99666 * 8 7 6 10 10 C 1.50698 * 110.30620 * 219.12686 * 8 7 6 11 11 H 1.08005 * 119.99819 * 115.71654 * 10 8 7 12 12 C 1.37875 * 120.00046 * 295.70995 * 10 8 7 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47901 * 110.99717 * 189.99681 * 5 4 2 19 19 C 1.50702 * 109.46931 * 240.00312 * 2 1 3 20 20 C 1.38236 * 119.61696 * 324.99558 * 19 2 1 21 21 C 1.38626 * 119.15542 * 179.97438 * 20 19 2 22 22 C 1.38670 * 118.42690 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16180 * 0.02562 * 22 21 20 24 24 N 1.31854 * 119.62052 * 144.72936 * 19 2 1 25 25 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47301 * 299.99842 * 1 2 3 27 27 H 1.09002 * 109.47438 * 60.00208 * 1 2 3 28 28 H 1.08994 * 109.47089 * 175.00126 * 4 2 1 29 29 H 1.09002 * 109.47292 * 54.99692 * 4 2 1 30 30 H 1.09000 * 110.66918 * 318.71547 * 6 5 4 31 31 H 1.08995 * 110.66750 * 81.84704 * 6 5 4 32 32 H 1.08998 * 110.72347 * 279.05865 * 7 6 5 33 33 H 1.09000 * 110.72538 * 155.77173 * 7 6 5 34 34 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 35 35 H 1.09008 * 109.91708 * 26.49545 * 18 5 4 36 36 H 1.08998 * 110.08690 * 265.29420 * 18 5 4 37 37 H 1.07994 * 120.41790 * 0.02562 * 20 19 2 38 38 H 1.08002 * 120.78300 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.41867 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.61760 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.0754 1.4567 2.3368 7 6 2.0776 1.9398 3.8090 8 6 2.6030 0.7053 4.5772 9 1 3.6731 0.7999 4.7616 10 6 1.8608 0.5445 5.8788 11 1 1.2438 -0.3263 6.0446 12 6 1.9696 1.5089 6.8581 13 7 2.7206 2.5695 6.6561 14 14 1.0502 1.3093 8.4719 15 1 1.3315 2.4739 9.3493 16 1 1.4963 0.0629 9.1448 17 1 -0.4085 1.2325 8.2044 18 6 2.3240 -0.4932 3.6513 19 6 2.0323 -0.7104 -1.2305 20 6 1.3319 -1.7934 -1.7278 21 6 1.8023 -2.4394 -2.8606 22 6 2.9643 -1.9697 -3.4539 23 6 3.6106 -0.8812 -2.8998 24 7 3.1318 -0.2884 -1.8234 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7199 1.2951 30 1 3.0745 1.5280 1.9071 31 1 1.3596 2.0278 1.7457 32 1 1.0686 2.1949 4.1327 33 1 2.7505 2.7880 3.9356 34 1 3.1983 2.6730 5.8183 35 1 3.2621 -0.9731 3.3723 36 1 1.6764 -1.2098 4.1564 37 1 0.4294 -2.1314 -1.2405 38 1 1.2761 -3.2885 -3.2713 39 1 3.3596 -2.4490 -4.3373 40 1 4.5164 -0.5094 -3.3556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692875139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = 8.316653 kcal Electronic energy + Delta-G solvation = -19262.412154 eV Core-core repulsion = 16461.555303 eV Total energy + Delta-G solvation = -2800.856850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34853 -39.99045 -36.70292 -34.78997 -33.39326 -31.92114 -30.40525 -29.93276 -27.04998 -25.91412 -24.72789 -24.21392 -22.45854 -21.58890 -20.75078 -18.96251 -17.81678 -17.46130 -16.96459 -16.58844 -15.99613 -15.64778 -15.40335 -15.22346 -14.67245 -14.59388 -14.40878 -13.87532 -13.79876 -13.54469 -13.07376 -13.03263 -12.59975 -12.57388 -12.26503 -12.22755 -12.00273 -11.93856 -11.82051 -11.63714 -11.50661 -10.80111 -10.53961 -10.46352 -10.33218 -9.89238 -9.37662 -8.56364 -6.28315 0.17045 0.38481 1.55084 1.63214 1.82153 2.60373 2.78923 3.00020 3.23119 3.37810 3.79602 3.88070 3.95986 4.02496 4.10542 4.22813 4.25133 4.25222 4.34161 4.36152 4.39171 4.66061 4.68172 4.71500 4.77198 4.82465 4.91174 5.00533 5.02444 5.11757 5.15182 5.26150 5.31987 5.35101 5.43245 5.48018 5.81203 5.98191 6.10542 6.15752 6.24833 6.68435 7.08678 7.50999 8.82376 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.047774 B = 0.003828 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.954894 B = 7312.836056 C = 7457.328667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.037 4.037 3 H 0.073 0.927 4 C 0.066 3.934 5 N -0.509 5.509 6 C 0.047 3.953 7 C -0.102 4.102 8 C 0.013 3.987 9 H -0.009 1.009 10 C -0.600 4.600 11 H 0.047 0.953 12 C -0.032 4.032 13 N -0.939 5.939 14 Si 1.114 2.886 15 H -0.286 1.286 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.062 3.938 19 C 0.118 3.882 20 C -0.172 4.172 21 C -0.075 4.075 22 C -0.175 4.175 23 C 0.081 3.919 24 N -0.522 5.522 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 -9.969 -20.944 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 H 0.091 0.909 4 C -0.062 4.062 5 N -0.233 5.233 6 C -0.080 4.080 7 C -0.140 4.140 8 C -0.006 4.006 9 H 0.009 0.991 10 C -0.638 4.638 11 H 0.065 0.935 12 C -0.230 4.230 13 N -0.577 5.577 14 Si 0.936 3.064 15 H -0.211 1.211 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.065 4.065 19 C -0.019 4.019 20 C -0.192 4.192 21 C -0.101 4.101 22 C -0.194 4.194 23 C -0.076 4.076 24 N -0.232 5.232 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.541 -8.597 -19.115 21.256 hybrid contribution 1.288 -1.050 -1.680 2.363 sum -2.253 -9.647 -20.795 23.034 Atomic orbital electron populations 1.21751 0.91890 1.03060 1.02117 1.20044 0.97608 0.98743 0.89275 0.90884 1.22245 0.96866 0.97975 0.89151 1.64768 1.54397 1.02152 1.01977 1.23150 0.98252 0.90123 0.96512 1.22457 0.99665 0.97717 0.94211 1.19666 0.94042 0.92330 0.94522 0.99053 1.22341 1.31156 1.08816 1.01465 0.93451 1.27215 0.97138 0.92391 1.06295 1.70902 1.29516 1.29319 1.27922 0.82963 0.75475 0.76256 0.71669 1.21141 1.19713 1.19684 1.22733 0.95505 0.97492 0.90803 1.21233 0.91102 0.94003 0.95608 1.22265 1.02195 0.96534 0.98197 1.22037 0.95309 0.98998 0.93763 1.22501 0.96659 0.97876 1.02374 1.23200 0.99747 0.93221 0.91388 1.67443 1.13165 1.32005 1.10581 0.90922 0.91983 0.92088 0.96571 0.89821 0.94728 0.89292 0.93542 0.94272 0.92954 0.95544 0.91443 0.83000 0.81646 0.81689 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.51 71.98 0.61 -2.42 16 2 C -0.04 -1.01 2.39 -11.54 -0.03 -1.04 16 3 H 0.07 2.23 6.52 -2.39 -0.02 2.22 16 4 C 0.07 2.08 4.40 86.30 0.38 2.46 16 5 N -0.51 -19.37 4.85 -883.01 -4.28 -23.65 16 6 C 0.05 1.85 5.09 86.65 0.44 2.29 16 7 C -0.10 -4.92 5.57 31.80 0.18 -4.74 16 8 C 0.01 0.70 2.54 -10.66 -0.03 0.68 16 9 H -0.01 -0.49 7.95 -2.39 -0.02 -0.51 16 10 C -0.60 -34.47 8.37 25.60 0.21 -34.25 16 11 H 0.05 2.69 7.34 -2.91 -0.02 2.67 16 12 C -0.03 -1.88 5.34 84.65 0.45 -1.43 16 13 N -0.94 -58.06 13.45 21.45 0.29 -57.77 16 14 Si 1.11 51.06 29.90 68.60 2.05 53.11 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.06 2.75 6.35 86.45 0.55 3.30 16 19 C 0.12 2.98 5.79 42.56 0.25 3.23 16 20 C -0.17 -3.30 9.18 22.36 0.21 -3.10 16 21 C -0.08 -1.10 10.18 22.47 0.23 -0.87 16 22 C -0.17 -2.53 10.11 22.36 0.23 -2.30 16 23 C 0.08 1.61 11.18 84.67 0.95 2.56 16 24 N -0.52 -14.16 10.27 -183.88 -1.89 -16.05 16 25 H 0.07 1.42 6.49 -2.39 -0.02 1.41 16 26 H 0.06 1.66 7.75 -2.39 -0.02 1.64 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.02 0.56 7.81 -2.39 -0.02 0.54 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.34 8.01 -2.39 -0.02 1.32 16 31 H 0.09 3.11 7.56 -2.39 -0.02 3.09 16 32 H 0.05 2.41 7.86 -2.39 -0.02 2.39 16 33 H 0.04 1.94 7.10 -2.39 -0.02 1.92 16 34 H 0.26 16.15 5.65 -92.71 -0.52 15.63 16 35 H 0.03 1.11 7.57 -2.38 -0.02 1.09 16 36 H 0.07 3.03 7.39 -2.39 -0.02 3.02 16 37 H 0.15 2.35 6.31 -2.91 -0.02 2.34 16 38 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -68.99 316.54 2.04 -66.95 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.25 Total: 13.05 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.62 Total: -35.64 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -5.88 Total: -97.47 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -68.99 2.04 -66.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692875139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.262 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds