Wall clock time and date at job start Mon Mar 30 2020 07:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30480 * 1 3 3 Si 1.86807 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47072 * 274.98788 * 3 2 1 5 5 H 1.48498 * 109.46756 * 34.98185 * 3 2 1 6 6 H 1.48496 * 109.47313 * 154.98459 * 3 2 1 7 7 C 1.40452 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 186.22921 * 7 2 1 9 9 C 1.41664 * 119.99667 * 6.22259 * 7 2 1 10 10 O 1.21739 * 120.00001 * 353.70099 * 9 7 2 11 11 C 1.48060 * 119.99833 * 173.69717 * 9 7 2 12 12 N 1.32084 * 119.26582 * 0.02562 * 11 9 7 13 13 C 1.33201 * 121.29816 * 180.02562 * 12 11 9 14 14 C 1.40901 * 120.95833 * 179.97438 * 13 12 11 15 15 C 1.35994 * 119.73377 * 180.02562 * 14 13 12 16 16 C 1.39443 * 121.07798 * 0.02562 * 15 14 13 17 17 C 1.36200 * 120.92674 * 0.02562 * 16 15 14 18 18 C 1.40355 * 119.66169 * 359.95692 * 17 16 15 19 19 C 1.40794 * 121.25366 * 180.02562 * 18 17 16 20 20 C 1.36544 * 118.26574 * 180.27062 * 19 18 17 21 21 Cl 1.73599 * 120.11081 * 179.74987 * 20 19 18 22 22 H 0.96997 * 120.00243 * 0.02562 * 1 2 3 23 23 H 1.08006 * 120.13582 * 0.04774 * 14 13 12 24 24 H 1.07998 * 119.46298 * 180.02562 * 15 14 13 25 25 H 1.08002 * 119.53406 * 179.97438 * 16 15 14 26 26 H 1.07995 * 120.17006 * 180.02562 * 17 16 15 27 27 H 1.08003 * 120.86621 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 2.3809 2.1073 -1.3948 5 1 1.4929 2.6200 0.8027 6 1 3.5851 1.4122 0.5920 7 6 2.0072 -1.2163 -0.0005 8 1 3.0824 -1.2191 0.1009 9 6 1.3051 -2.4395 -0.1341 10 8 0.0877 -2.4459 -0.1330 11 6 2.0520 -3.7101 -0.2750 12 7 3.3726 -3.6864 -0.2739 13 6 4.0849 -4.8050 -0.3985 14 6 5.4935 -4.7713 -0.3969 15 6 6.1960 -5.9285 -0.5264 16 6 5.5453 -7.1543 -0.6619 17 6 4.1853 -7.2278 -0.6690 18 6 3.4256 -6.0550 -0.5374 19 6 2.0182 -6.0922 -0.5399 20 6 1.3400 -4.9138 -0.4135 21 17 -0.3960 -4.9034 -0.4172 22 1 -0.4850 0.8400 -0.0004 23 1 6.0133 -3.8303 -0.2930 24 1 7.2756 -5.8977 -0.5241 25 1 6.1279 -8.0580 -0.7634 26 1 3.6939 -8.1837 -0.7743 27 1 1.4888 -7.0279 -0.6432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694842351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:25 Heat of formation + Delta-G solvation = 14.361841 kcal Electronic energy + Delta-G solvation = -16260.086388 eV Core-core repulsion = 13394.982895 eV Total energy + Delta-G solvation = -2865.103492 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.030 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.37078 -37.42545 -35.90526 -35.56400 -33.05734 -32.72614 -30.09208 -29.61713 -26.98824 -24.37596 -23.15215 -21.82029 -20.38325 -17.63416 -17.32931 -16.72575 -15.75931 -14.90411 -14.61430 -14.22891 -14.19717 -13.81999 -13.14784 -12.94583 -12.76347 -12.35073 -11.58714 -11.51844 -11.44880 -11.27739 -11.09824 -10.72014 -10.48136 -10.33257 -10.16703 -9.88826 -9.13136 -8.98843 -8.13658 -7.94799 -7.37188 -6.34023 -4.89303 0.62616 1.03586 2.25498 2.77327 2.95433 3.12762 3.14608 3.19511 4.00455 4.13221 4.60373 4.76015 4.80425 5.00157 5.10927 5.16892 5.31993 5.43892 5.70430 5.81984 5.97421 6.05620 6.18570 6.39826 6.52867 6.56445 6.83429 7.07618 7.24245 8.19541 8.41471 8.71069 8.80166 10.23483 10.45006 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.007367 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.313259 B = 3800.028693 C = 5116.508199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.086 0.914 9 C 0.378 3.622 10 O -0.515 6.515 11 C 0.150 3.850 12 N -0.434 5.434 13 C 0.123 3.877 14 C -0.087 4.087 15 C -0.112 4.112 16 C -0.128 4.128 17 C -0.094 4.094 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.057 4.057 21 Cl -0.026 7.026 22 H 0.276 0.724 23 H 0.135 0.865 24 H 0.125 0.875 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -10.391 -1.220 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.509 4.509 8 H 0.104 0.896 9 C 0.273 3.727 10 O -0.401 6.401 11 C -0.002 4.002 12 N -0.145 5.145 13 C -0.001 4.001 14 C -0.105 4.105 15 C -0.132 4.132 16 C -0.146 4.146 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.086 4.086 21 Cl 0.003 6.997 22 H 0.087 0.913 23 H 0.153 0.847 24 H 0.143 0.857 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.726 -9.587 -1.133 12.365 hybrid contribution 0.031 -0.230 -0.144 0.273 sum 7.757 -9.817 -1.276 12.577 Atomic orbital electron populations 1.69943 1.07632 1.28401 1.29541 1.26100 0.94672 1.01245 0.92995 0.86272 0.80665 0.80513 0.79066 1.19431 1.20175 1.18258 1.21041 0.96239 0.90829 1.42775 0.89576 1.18021 0.88303 0.84455 0.81930 1.90616 1.13701 1.86177 1.49630 1.23966 0.89281 0.97294 0.89700 1.68455 1.06768 1.27460 1.11817 1.19256 0.94588 0.88475 0.97785 1.20884 0.91392 0.99119 0.99143 1.20809 0.99971 0.92249 1.00177 1.20819 0.94432 0.97819 1.01521 1.20876 0.94074 0.96744 0.99630 1.18814 0.93213 0.94956 1.03761 1.21284 0.92821 0.97533 0.98918 1.22004 0.88039 0.95238 1.03342 1.98383 1.06425 1.98702 1.96162 0.91334 0.84705 0.85728 0.86031 0.85719 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.39 11.76 55.57 0.65 -19.73 15 2 C 0.07 1.96 5.50 -17.29 -0.10 1.87 15 3 Si 0.91 19.35 29.57 -169.99 -5.03 14.32 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 7 C -0.48 -13.29 8.99 -37.44 -0.34 -13.62 15 8 H 0.09 2.30 7.36 -52.49 -0.39 1.92 15 9 C 0.38 10.71 6.90 -34.25 -0.24 10.48 15 10 O -0.51 -15.57 12.42 5.15 0.06 -15.51 15 11 C 0.15 3.68 6.74 -82.86 -0.56 3.12 15 12 N -0.43 -9.93 9.37 -7.47 -0.07 -10.00 15 13 C 0.12 2.35 6.61 -84.82 -0.56 1.79 15 14 C -0.09 -1.35 9.99 -39.38 -0.39 -1.74 15 15 C -0.11 -1.38 9.94 -39.94 -0.40 -1.77 15 16 C -0.13 -1.48 9.96 -39.87 -0.40 -1.88 15 17 C -0.09 -1.24 9.77 -39.52 -0.39 -1.63 15 18 C -0.10 -1.79 5.75 -106.69 -0.61 -2.40 15 19 C -0.08 -1.39 9.65 -39.23 -0.38 -1.76 15 20 C -0.06 -1.22 6.32 -39.33 -0.25 -1.47 15 21 Cl -0.03 -0.55 25.92 -51.86 -1.34 -1.90 15 22 H 0.28 6.93 8.29 -40.82 -0.34 6.59 15 23 H 0.14 1.95 8.06 -52.48 -0.42 1.52 15 24 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 25 H 0.12 1.02 8.06 -52.49 -0.42 0.60 15 26 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 27 H 0.14 1.94 8.06 -52.48 -0.42 1.52 15 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -31.64 262.41 -8.00 -39.64 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -1.63 Total: -1.76 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -4.60 Total: -9.02 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.58 Total: -29.73 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.06 Total: -15.51 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.34 Total: -1.90 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.64 -8.00 -39.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694842351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.003 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds