Wall clock time and date at job start Mon Mar 30 2020 07:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30480 * 1 3 3 Si 1.86807 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47072 * 274.98788 * 3 2 1 5 5 H 1.48498 * 109.46756 * 34.98185 * 3 2 1 6 6 H 1.48496 * 109.47313 * 154.98459 * 3 2 1 7 7 C 1.40452 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00342 * 186.22921 * 7 2 1 9 9 C 1.41664 * 119.99667 * 6.22259 * 7 2 1 10 10 O 1.21739 * 120.00001 * 353.70099 * 9 7 2 11 11 C 1.48060 * 119.99833 * 173.69717 * 9 7 2 12 12 N 1.32084 * 119.26582 * 0.02562 * 11 9 7 13 13 C 1.33201 * 121.29816 * 180.02562 * 12 11 9 14 14 C 1.40901 * 120.95833 * 179.97438 * 13 12 11 15 15 C 1.35994 * 119.73377 * 180.02562 * 14 13 12 16 16 C 1.39443 * 121.07798 * 0.02562 * 15 14 13 17 17 C 1.36200 * 120.92674 * 0.02562 * 16 15 14 18 18 C 1.40355 * 119.66169 * 359.95692 * 17 16 15 19 19 C 1.40794 * 121.25366 * 180.02562 * 18 17 16 20 20 C 1.36544 * 118.26574 * 180.27062 * 19 18 17 21 21 Cl 1.73599 * 120.11081 * 179.74987 * 20 19 18 22 22 H 0.96997 * 120.00243 * 0.02562 * 1 2 3 23 23 H 1.08006 * 120.13582 * 0.04774 * 14 13 12 24 24 H 1.07998 * 119.46298 * 180.02562 * 15 14 13 25 25 H 1.08002 * 119.53406 * 179.97438 * 16 15 14 26 26 H 1.07995 * 120.17006 * 180.02562 * 17 16 15 27 27 H 1.08003 * 120.86621 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2388 1.6178 0.0000 4 1 2.3809 2.1073 -1.3948 5 1 1.4929 2.6200 0.8027 6 1 3.5851 1.4122 0.5920 7 6 2.0072 -1.2163 -0.0005 8 1 3.0824 -1.2191 0.1009 9 6 1.3051 -2.4395 -0.1341 10 8 0.0877 -2.4459 -0.1330 11 6 2.0520 -3.7101 -0.2750 12 7 3.3726 -3.6864 -0.2739 13 6 4.0849 -4.8050 -0.3985 14 6 5.4935 -4.7713 -0.3969 15 6 6.1960 -5.9285 -0.5264 16 6 5.5453 -7.1543 -0.6619 17 6 4.1853 -7.2278 -0.6690 18 6 3.4256 -6.0550 -0.5374 19 6 2.0182 -6.0922 -0.5399 20 6 1.3400 -4.9138 -0.4135 21 17 -0.3960 -4.9034 -0.4172 22 1 -0.4850 0.8400 -0.0004 23 1 6.0133 -3.8303 -0.2930 24 1 7.2756 -5.8977 -0.5241 25 1 6.1279 -8.0580 -0.7634 26 1 3.6939 -8.1837 -0.7743 27 1 1.4888 -7.0279 -0.6432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694842351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:21 Heat of formation + Delta-G solvation = -5.791505 kcal Electronic energy + Delta-G solvation = -16260.960302 eV Core-core repulsion = 13394.982895 eV Total energy + Delta-G solvation = -2865.977407 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.030 amu Computer time = 8.13 seconds Orbital eigenvalues (eV) -41.75597 -39.07868 -37.63447 -37.08701 -34.79992 -34.40409 -31.52294 -30.88154 -28.95988 -25.92596 -24.52081 -23.04137 -22.16568 -19.05382 -18.91067 -18.17331 -17.72259 -16.48351 -15.90038 -15.76866 -15.47446 -15.21842 -14.72425 -14.63063 -14.14092 -14.04318 -13.30586 -13.26168 -12.76024 -12.60347 -12.52851 -12.35220 -12.23611 -12.10964 -11.84676 -11.23531 -10.97376 -10.70223 -9.57833 -9.39280 -9.18351 -8.33742 -7.04144 -0.68959 -0.35391 0.97640 1.22069 1.32778 1.37594 1.54973 1.69192 2.21834 2.41069 3.04839 3.33920 3.59942 3.65583 3.68855 3.89674 3.94410 4.27998 4.34792 4.53184 4.72275 4.77214 4.97251 5.11058 5.20650 5.40627 5.48131 5.52135 5.92819 6.08232 6.64971 6.69023 6.94256 8.19779 8.44574 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.007367 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.313259 B = 3800.028693 C = 5116.508199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.514 4.514 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.549 6.549 11 C 0.107 3.893 12 N -0.457 5.457 13 C 0.091 3.909 14 C -0.115 4.115 15 C -0.085 4.085 16 C -0.107 4.107 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.055 4.055 20 C -0.087 4.087 21 Cl -0.041 7.041 22 H 0.285 0.715 23 H 0.134 0.866 24 H 0.167 0.833 25 H 0.172 0.828 26 H 0.164 0.836 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -12.942 -1.626 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.545 4.545 8 H 0.103 0.897 9 C 0.257 3.743 10 O -0.439 6.439 11 C -0.045 4.045 12 N -0.168 5.168 13 C -0.033 4.033 14 C -0.134 4.134 15 C -0.104 4.104 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.082 4.082 20 C -0.116 4.116 21 Cl -0.012 7.012 22 H 0.095 0.905 23 H 0.152 0.848 24 H 0.185 0.815 25 H 0.189 0.811 26 H 0.182 0.818 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.195 -12.149 -1.537 16.592 hybrid contribution -0.744 0.254 -0.041 0.787 sum 10.452 -11.895 -1.578 15.913 Atomic orbital electron populations 1.70041 1.09622 1.30083 1.30598 1.27215 0.95537 1.05173 0.91535 0.85052 0.79109 0.74935 0.79617 1.18400 1.18645 1.17601 1.21342 0.96384 0.92126 1.44693 0.89696 1.18508 0.88326 0.86551 0.80906 1.90546 1.14972 1.87548 1.50843 1.23199 0.90200 0.96929 0.94152 1.68241 1.06352 1.30237 1.12010 1.19796 0.96037 0.88485 0.98992 1.21070 0.89962 1.00992 1.01351 1.21373 1.02034 0.91135 0.95899 1.21465 0.94149 0.99208 0.97634 1.21325 0.94818 0.96527 0.98628 1.19173 0.93253 0.95797 1.03199 1.21710 0.93277 0.97410 0.95756 1.21949 0.87434 0.95750 1.06464 1.98355 1.07570 1.98727 1.96528 0.90468 0.84769 0.81513 0.81054 0.81831 0.80209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -45.78 11.76 21.91 0.26 -45.52 15 2 C 0.03 1.40 5.50 85.43 0.47 1.87 15 3 Si 0.99 40.96 29.57 68.60 2.03 42.99 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 15 7 C -0.51 -30.51 8.99 23.66 0.21 -30.29 15 8 H 0.08 4.85 7.36 -2.91 -0.02 4.83 15 9 C 0.36 21.92 6.90 25.72 0.18 22.10 15 10 O -0.55 -35.73 12.42 -4.47 -0.06 -35.79 15 11 C 0.11 5.57 6.74 42.28 0.28 5.86 15 12 N -0.46 -21.89 9.37 -177.56 -1.66 -23.55 15 13 C 0.09 3.44 6.61 40.52 0.27 3.71 15 14 C -0.12 -3.34 9.99 22.40 0.22 -3.12 15 15 C -0.08 -1.62 9.94 22.04 0.22 -1.40 15 16 C -0.11 -1.74 9.96 22.09 0.22 -1.52 15 17 C -0.09 -1.96 9.77 22.31 0.22 -1.74 15 18 C -0.11 -3.56 5.75 -21.21 -0.12 -3.68 15 19 C -0.06 -1.87 9.65 22.50 0.22 -1.66 15 20 C -0.09 -3.86 6.32 22.44 0.14 -3.72 15 21 Cl -0.04 -1.83 25.92 -2.72 -0.07 -1.90 15 22 H 0.28 14.96 8.29 -92.71 -0.77 14.19 15 23 H 0.13 3.78 8.06 -2.91 -0.02 3.76 15 24 H 0.17 1.86 8.06 -2.91 -0.02 1.83 15 25 H 0.17 1.29 8.06 -2.91 -0.02 1.26 15 26 H 0.16 2.17 8.06 -2.91 -0.02 2.15 15 27 H 0.18 4.44 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -77.33 262.41 4.24 -73.10 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.21 Total: 4.27 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 2.53 Total: -13.59 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.41 Total: -69.07 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.06 Total: -35.79 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.90 kcal Total: -77.33 4.24 -73.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694842351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.304 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.14 seconds