Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46703 * 2 1 4 4 C 1.52996 * 109.47117 * 120.00367 * 2 1 3 5 5 C 1.50701 * 109.46708 * 182.89462 * 4 2 1 6 6 H 1.08005 * 120.00545 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00332 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47245 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47341 * 120.00353 * 9 7 5 12 12 H 1.48505 * 109.47289 * 240.00459 * 9 7 5 13 13 N 1.46902 * 109.46965 * 240.00374 * 2 1 3 14 14 C 1.46430 * 110.99804 * 95.96209 * 13 2 1 15 15 C 1.53310 * 108.62356 * 287.81860 * 14 13 2 16 16 H 1.08999 * 109.76227 * 51.34216 * 15 14 13 17 17 N 1.46902 * 109.72836 * 172.09987 * 15 14 13 18 18 C 1.53048 * 107.97066 * 291.70805 * 15 14 13 19 19 C 1.50800 * 109.62548 * 47.27342 * 18 15 14 20 20 C 1.38624 * 118.12380 * 164.56075 * 19 18 15 21 21 C 1.38054 * 120.48675 * 179.78848 * 20 19 18 22 22 C 1.38311 * 119.89131 * 359.97164 * 21 20 19 23 23 C 1.37807 * 119.95263 * 0.11527 * 22 21 20 24 24 C 1.38367 * 122.01735 * 344.53139 * 19 18 15 25 25 H 1.08998 * 109.47390 * 68.08483 * 1 2 3 26 26 H 1.09002 * 109.47043 * 188.08066 * 1 2 3 27 27 H 1.09000 * 109.46824 * 308.07718 * 1 2 3 28 28 H 1.09002 * 109.47189 * 302.88691 * 4 2 1 29 29 H 1.08994 * 109.47319 * 62.89687 * 4 2 1 30 30 H 0.97003 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.60968 * 47.56298 * 14 13 2 32 32 H 1.08999 * 109.60763 * 168.06573 * 14 13 2 33 33 H 1.00899 * 110.99683 * 178.50855 * 17 15 14 34 34 H 1.00898 * 110.99886 * 302.45810 * 17 15 14 35 35 H 1.08999 * 109.43871 * 287.23269 * 18 15 14 36 36 H 1.08999 * 109.43786 * 167.30671 * 18 15 14 37 37 H 1.08000 * 119.75161 * 359.74252 * 20 19 18 38 38 H 1.08003 * 120.05155 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.02012 * 180.08921 * 22 21 20 40 40 H 1.07990 * 119.78994 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5453 -0.6594 1.2855 6 1 4.0844 -0.1556 0.4967 7 6 4.2345 -1.2451 2.3262 8 7 3.5781 -1.8581 3.2870 9 14 6.1004 -1.1690 2.3709 10 1 6.5943 -0.4287 1.1821 11 1 6.5379 -0.4698 3.6058 12 1 6.6524 -2.5476 2.3606 13 7 2.0197 -0.6924 -1.1995 14 6 2.3284 0.2615 -2.2667 15 6 1.0119 0.8112 -2.8280 16 1 0.3868 1.1746 -2.0124 17 7 1.2918 1.9060 -3.7666 18 6 0.2982 -0.3280 -3.5595 19 6 0.2993 -1.5640 -2.6955 20 6 -0.5667 -2.5942 -3.0276 21 6 -0.6029 -3.7495 -2.2727 22 6 0.2302 -3.8832 -1.1768 23 6 1.0925 -2.8626 -0.8394 24 6 1.1318 -1.6907 -1.5975 25 1 -0.3634 0.3835 -0.9534 26 1 -0.3633 -1.0175 0.1445 27 1 -0.3633 0.6338 0.8090 28 1 1.6350 -0.2383 2.1384 29 1 1.7197 -1.7628 1.2235 30 1 4.0630 -2.2705 4.0190 31 1 2.9249 1.0802 -1.8642 32 1 2.8820 -0.2426 -3.0589 33 1 0.4385 2.2664 -4.1665 34 1 1.8195 2.6402 -3.3188 35 1 0.8160 -0.5390 -4.4952 36 1 -0.7299 -0.0348 -3.7719 37 1 -1.2183 -2.4919 -3.8828 38 1 -1.2807 -4.5476 -2.5376 39 1 0.2046 -4.7867 -0.5857 40 1 1.7421 -2.9700 0.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = 34.999909 kcal Electronic energy + Delta-G solvation = -20410.140083 eV Core-core repulsion = 17610.440305 eV Total energy + Delta-G solvation = -2799.699778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.64624 -36.99048 -35.42938 -32.85147 -31.78669 -30.81471 -29.41639 -27.74247 -27.40111 -24.50612 -23.23313 -22.06601 -21.58971 -20.28475 -18.65750 -16.67598 -16.13478 -15.94634 -15.66109 -14.91726 -14.70958 -14.40931 -14.23735 -13.71589 -13.15663 -12.84166 -12.63984 -12.52879 -12.46896 -12.09243 -11.70959 -11.55598 -11.33964 -11.21146 -11.15233 -10.78699 -10.48232 -10.46220 -10.33853 -9.94222 -9.43920 -8.98714 -8.66076 -8.61686 -8.31842 -8.23234 -7.23562 -5.91059 -3.89124 1.77213 1.85506 3.36795 3.44654 3.49404 4.10867 4.31059 4.53640 4.56966 4.88760 5.01823 5.23107 5.28860 5.44203 5.46403 5.47120 5.66402 5.71706 5.78201 5.87607 5.91206 6.01153 6.06958 6.13393 6.25772 6.29889 6.35084 6.55002 6.63805 6.81372 6.89114 6.94722 7.00329 7.08367 7.27763 7.37248 7.53148 7.73912 7.93876 8.05385 8.11395 8.53950 9.15599 9.72569 11.20672 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.007316 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.125904 B = 3826.259853 C = 4606.343195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.093 3.907 3 H 0.068 0.932 4 C 0.027 3.973 5 C -0.491 4.491 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.474 5.474 14 C 0.068 3.932 15 C 0.042 3.958 16 H 0.054 0.946 17 N -0.843 5.843 18 C -0.065 4.065 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.114 4.114 24 C 0.140 3.860 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.029 0.971 30 H 0.257 0.743 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.337 0.663 34 H 0.342 0.658 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 2.663 -12.091 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.011 4.011 3 H 0.086 0.914 4 C -0.010 4.010 5 C -0.530 4.530 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.188 5.188 14 C -0.060 4.060 15 C -0.070 4.070 16 H 0.071 0.929 17 N -0.373 5.373 18 C -0.102 4.102 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.166 4.166 22 C -0.132 4.132 23 C -0.134 4.134 24 C 0.042 3.958 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.854 1.858 -12.183 14.614 hybrid contribution -0.198 0.859 0.538 1.032 sum -8.052 2.716 -11.645 14.416 Atomic orbital electron populations 1.22771 0.98368 1.02384 1.00756 1.22043 0.90929 0.97196 0.90960 0.91417 1.19339 0.96339 0.95945 0.89396 1.21152 0.91484 1.33908 1.06426 0.92409 1.24982 0.97978 0.95890 0.95901 1.69972 1.35028 1.37526 1.11723 0.86597 0.86513 0.77604 0.77629 1.19837 1.21404 1.21248 1.58699 1.42021 1.12525 1.05539 1.22243 0.94958 0.95209 0.93613 1.22365 0.98784 0.92008 0.93887 0.92878 1.58687 1.25980 1.14099 1.38498 1.20434 1.00015 0.91724 0.98037 1.19835 0.97760 0.96614 0.99481 1.20766 0.98966 0.93672 0.99592 1.20891 1.00916 0.97898 0.96915 1.21000 0.96340 0.98757 0.97108 1.21583 0.99365 0.91615 1.00796 1.18491 0.90172 0.93236 0.93851 0.93103 0.92101 0.92688 0.96306 0.95321 0.93328 0.90292 0.90310 0.85149 0.84502 0.90155 0.91691 0.87095 0.86919 0.86405 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 7.82 37.16 0.29 -2.94 16 2 C 0.09 1.87 1.96 -67.71 -0.13 1.73 16 3 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16 4 C 0.03 0.67 4.43 -27.88 -0.12 0.54 16 5 C -0.49 -13.50 8.79 -34.44 -0.30 -13.80 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 N -0.47 -9.09 4.04 -163.78 -0.66 -9.75 16 14 C 0.07 1.12 5.30 -3.92 -0.02 1.10 16 15 C 0.04 0.57 2.98 -67.53 -0.20 0.36 16 16 H 0.05 0.76 4.83 -51.93 -0.25 0.51 16 17 N -0.84 -9.31 9.26 -4.51 -0.04 -9.35 16 18 C -0.06 -0.86 5.32 -27.81 -0.15 -1.01 16 19 C -0.13 -2.09 5.14 -104.38 -0.54 -2.62 16 20 C -0.11 -1.58 9.63 -39.51 -0.38 -1.96 16 21 C -0.15 -2.10 10.05 -39.62 -0.40 -2.50 16 22 C -0.11 -1.82 10.03 -39.71 -0.40 -2.22 16 23 C -0.11 -2.17 8.05 -39.22 -0.32 -2.48 16 24 C 0.14 2.55 3.41 -83.85 -0.29 2.26 16 25 H 0.05 0.80 4.44 -51.93 -0.23 0.57 16 26 H 0.06 1.13 6.61 -51.93 -0.34 0.79 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.75 5.29 -51.93 -0.27 0.48 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.08 1.28 7.72 -51.93 -0.40 0.88 16 32 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 33 H 0.34 3.08 9.04 -39.29 -0.36 2.73 16 34 H 0.34 3.45 9.02 -39.29 -0.35 3.09 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 3.17 5.95 -52.49 -0.31 2.86 16 LS Contribution 307.06 15.07 4.63 4.63 Total: -1.00 -29.65 307.06 -9.24 -38.89 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.83 Total: 6.93 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.05 Total: -22.17 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.03 Total: -45.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.65 -9.24 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.895 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds